Protein

View in Explore
Genbank accession
WQY91224.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSSGCGDVLSLNDLQVAKKHQTFEAEVITGLSGGQAGGGSIDFATNAVTGQVQKTLPAVLRDAGINLAPFDFNTGGTLGVDDAGKAVLWPAPAGDGNYYIWRGTLPKVIPASSTPSSTGGVSNTAWTPISSGNAFDLVAYDGTRYTNKGNFTAGVTVAKSTDVVMQVSTGWYYRYLGAFPHVIGPSEAPDSNWQALGMITGYPINHILNWKNGSTSAEQALTAAFNTGLEVNIEGATLTTSTDYTCPAGAKGLYGRGTIMLGNNFRVTTSTDPVFTQFTVSASQGHSEVYLDGVNRVGQFVQIDNGYTFCIDDAENPVTPADSVDAIALTINLNNYKSQFIQVTEIIGHTASNKAILAQPLVVNQESGRAKFGFRTGNLTQFRIHSGVTMKSTDTTAMRRIMLLAQIKPEVIDCTFENCHIEMRYFCYSGRVEDCRVSGNTFQSMISFATSSSVCSIKNNKINTLGIGDADIGIYRQVCYANVTGNIVTSPFINTTYASAHWSITFHSMVYQSLMANNTVSSRSGVCAQYFCDDVIIDGNTINCFEFASVYNQGVTYSNNEFNIVSDSVILGNRRFTSKGNRWKMRSGFTTNCVSISSGARPFGFAGFKVINSGFHDFTDDDFETIGRNTFINPKTLLANPNTAPANAVLPTNNAHMANQTSGITIYDSRVATLRVNGCRFNELNYGINLYKNDTTKSSTAIEISDNSFTTDVGICLRGISARSLLSGFVKNCNFTGSIGVVNANTLGIPVLSCAFLSNNMSAILVASNLTAFMGVTMSTDCSVAGVVLTGFKWYDFNGYAASYASTPTYALASSLPGGYWWYAPAENLGQAASIPYEYSKGGTTGGNVLLRKALTIVQLV
Physico‐chemical
properties
protein length:861 AA
molecular weight: 92175,37530 Da
isoelectric point:6,15000
aromaticity:0,10221
hydropathy:-0,02300

Domains

Domains [InterPro]
DC_0018
ATT
1–140
DC_0018 G3DSA:2.10.10.80
G3DSA:2.10.10.80
ATT
68–128
G3DSA:2.10.10.80 G3DSA:2.10.10.80 DC_1528
IPR040775
RBD
96–130
IPR040775
WQY91224.1
1 861
Architecture
ATT
ATT
STR
ATT 1-140 | ATT 145-197 | STR 198-861
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WQY91224.1
1 861
Domain Start End Length (AA) Confidence
N-terminal 1 216 216 0,9907
Central domain 217 777 562 0,9847
C-terminal 778 861 83 0,9419
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-216
Central
217-777
C-terminal
778-861

Taxonomy

  Name Taxonomy ID Lineage
Phage Hafnia phage TS33
[NCBI] 		3110108 No lineage information
Host Hafnia sp. JB232
[NCBI] 		1434830 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Hafniaceae > Hafnia >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WQY91224.1 [NCBI]
Genbank nucleotide accession
OR844384.1 [NCBI]
CDS location
range 36671 -> 39256
strand +
CDS
ATGTCTAGCGGATGCGGCGATGTTTTATCGCTAAATGATTTACAAGTAGCAAAGAAACATCAGACGTTCGAAGCCGAGGTAATCACCGGATTAAGTGGGGGCCAAGCCGGCGGTGGTTCTATCGACTTCGCTACCAACGCAGTAACAGGGCAAGTGCAAAAGACACTGCCCGCTGTACTGCGCGATGCAGGTATTAATTTAGCGCCGTTCGACTTCAACACCGGCGGCACGTTAGGTGTTGACGACGCAGGTAAGGCAGTCTTATGGCCTGCACCAGCTGGTGACGGTAACTATTACATATGGCGCGGTACGTTGCCGAAGGTTATCCCTGCAAGTTCTACGCCTTCGTCTACAGGCGGTGTGTCCAACACAGCATGGACCCCGATTAGCTCCGGCAACGCGTTTGATTTAGTGGCTTACGACGGTACGCGATACACAAACAAAGGTAATTTCACCGCTGGCGTTACTGTAGCCAAAAGCACCGACGTTGTAATGCAGGTGTCTACCGGCTGGTATTATCGTTATTTAGGCGCGTTCCCCCACGTAATCGGGCCTTCTGAAGCACCAGATAGCAATTGGCAAGCGCTAGGTATGATTACGGGATACCCAATCAACCATATACTTAACTGGAAAAACGGCAGCACATCAGCGGAACAGGCGCTAACGGCAGCATTCAATACTGGATTAGAGGTTAATATTGAAGGTGCCACCTTAACAACGTCTACGGATTACACATGCCCTGCCGGCGCTAAAGGCTTGTACGGTCGCGGTACGATTATGCTGGGTAACAACTTCCGCGTAACAACTTCCACGGACCCAGTATTCACCCAATTCACAGTAAGCGCTTCACAAGGTCATTCCGAAGTGTACTTAGACGGTGTTAATCGCGTAGGGCAGTTTGTTCAAATAGATAATGGGTATACTTTCTGTATTGACGATGCAGAAAACCCTGTAACGCCCGCTGACAGTGTAGACGCTATCGCCTTGACAATTAACCTGAATAACTACAAATCTCAGTTCATTCAGGTTACGGAGATTATTGGGCATACCGCATCTAACAAAGCTATTTTGGCGCAGCCACTAGTCGTTAACCAAGAGTCAGGGAGGGCTAAGTTTGGCTTCAGAACAGGGAACCTAACCCAGTTCAGAATTCATAGCGGCGTTACGATGAAAAGCACCGACACCACCGCCATGCGTCGAATTATGCTGTTAGCGCAGATTAAGCCAGAAGTTATCGACTGTACTTTTGAAAACTGCCATATCGAGATGCGATATTTTTGCTATTCTGGTCGTGTGGAGGATTGCCGCGTTTCAGGTAATACATTCCAGTCTATGATTAGCTTCGCGACGTCAAGTTCTGTATGCTCGATTAAGAACAATAAAATTAATACGCTGGGTATCGGTGATGCGGATATCGGCATTTATCGCCAAGTGTGCTACGCAAACGTGACAGGAAACATTGTTACGTCCCCATTTATTAACACAACATACGCGTCTGCGCATTGGTCTATAACCTTCCATTCTATGGTCTATCAAAGCTTGATGGCAAACAATACTGTGTCCTCCCGTTCGGGCGTGTGCGCTCAGTATTTCTGCGATGACGTAATTATCGACGGCAACACAATCAACTGTTTCGAGTTTGCTAGTGTATACAATCAGGGCGTTACTTACTCGAACAATGAATTCAACATTGTTTCTGACTCAGTAATCCTCGGCAACCGTCGATTTACGTCGAAAGGCAACCGTTGGAAAATGCGTTCGGGCTTCACTACAAACTGTGTTTCTATCTCTAGCGGTGCGCGACCGTTCGGTTTTGCGGGGTTCAAAGTTATAAATAGCGGGTTCCACGACTTCACTGATGATGATTTTGAAACTATCGGCCGCAACACGTTTATTAACCCTAAAACGTTGTTGGCGAATCCGAACACAGCCCCTGCTAACGCGGTTCTACCGACTAACAACGCGCACATGGCGAACCAGACTAGCGGGATTACCATTTATGATTCTCGCGTTGCGACGTTGCGGGTTAACGGCTGCCGATTTAATGAACTGAACTATGGTATTAACCTGTACAAGAACGACACGACAAAAAGTTCTACCGCCATTGAGATTAGCGACAACAGTTTCACTACAGACGTGGGAATCTGTTTGCGCGGTATCTCGGCGCGGTCACTATTATCTGGCTTCGTAAAAAATTGTAACTTCACCGGCTCTATAGGCGTGGTTAACGCAAACACGTTAGGTATCCCGGTTCTTAGTTGCGCATTCCTGTCTAACAACATGAGTGCGATTCTTGTTGCGTCTAACCTTACGGCGTTTATGGGGGTTACTATGAGCACCGATTGTTCGGTGGCGGGCGTAGTGTTGACAGGGTTTAAATGGTACGACTTCAACGGTTACGCAGCGTCGTATGCGTCTACACCAACGTATGCGTTGGCCTCAAGTTTACCGGGAGGTTACTGGTGGTACGCGCCGGCTGAGAACTTAGGTCAAGCGGCGAGCATTCCTTATGAGTATTCAAAAGGTGGGACAACCGGCGGCAACGTGCTATTACGAAAGGCATTAACCATCGTACAATTAGTCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
9d7498c69c2ea858b1a99c7a7ea5e11c9402f6cbd8a247ee00e58e12252e3721
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6959
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
O-antigen biosynthesis mediates evolutionary trade-offs within a simple community Spencer-Drakes,T.C.J., Heussler,G.E., Villareal,S. and Dutton,R.J. 2023 — GenBank