Phage RBP Database

Genbank accession

UPW42648.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,83

TF

Evidence RBPdetect2

Probability 0,91

Seq2Symm

C3 confidence 0,964 truncated

C3	0,964
C1	0,003
C6	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTNIKARKGGSSSPRTPVEMPDNLISKDKVKLLLAVSDGEVVNDFSLKQLHFGGVPVQNEDGTFNYEGVIAEFRPGTQTQDYIQGFSESSAEFQVTREVTHNTPYTLTVSNKNLSAIRFRLLWPRVLKQKDNGDMVGSVVEYKIEMAVDGASYQTYLTGKIDGKNTTGGYDRSIRVNLPQNFTSQVLIRVSRVTPDSDGVKVVDAFQVQSYAEVIDAKFRYPLTAMLYVEFDSDLFQNQIPTISLKKKWKIIQVPSNYDPINRTYSGTWDGVFKWAWSNNPAWVLYDLIMNQRYGLDQRELGIPVDKWSLYEVAQYCDELVPDNRGGMEPRYLMDVVVQSQVEAFQLVRDICSAFRGMTFYNGESLSIIVDKPRDPVYLFTADNVVDGVFVRTFPSEKTMYTSCNVMFDDEENQYEQDVEPVFNPDAAMRFGHNPTSITAIGCTRRTEANRRGRWILQTNLSATTVSFSTGLEGMIPSCGDVIYVADPHWQSAFNLVLSGRIMEVTGTQVFLAFRCDAKAGDTLILNTDDGKPVRRTIASVSADGKTLTLNVGYNFDVAPDSVFLIESDQLAAEQYVVTRIEKGSDDDEFTFAITATQYNPNKYDAIDNGVITDDRPTSVVDPDSLGAPKNLTISSFSRIVQGMSVETMVIGWSAVQYAKLYEVQWRKDGGNWNNVPRTATTQVDIEGIYAGEYQARVRCISGGNVASPWSALATATLTGKVGAPKGPINLFASDDEIFGIRVKWAMPEGAEDTAYIELYQSQSGTDQDASLLTLIPYPAAEYWHSILPAGYVNFYKARSVDRIGNVSAWTDYARGMSSTDVNAITDVILDEILDSDAMKELQESAQDSAAKLNEYANSIIQNALANDGDVRIMRKENGKRKAEIKHAEVLIANETEARVQQVNQISAEFNENLNAGLTQVNEALANETEARVTSEEALSARIGENSAAIDQKLDSWADVNGVGSMYTMKLGLKYNGQEYNSGMALQLTAQGNNVVSQVLFIADRFAIIRNAESGAYTLPFVVQNDQVFMNNALIQDGSITNAKIGNVIQSNNYVSGSRGWSIDKNGNAEFSGVTVRGHIEADSGSFHGTIDATDGIFRGSVEANSFVGDIAAMGPFPTRVGSAWKSRVVHHDSSEKGGKNYAILGLIRWDAGDKTGSVIVECYVNGIRVSSQTYSGRDTGESTRTRLTAVGVATGINTKDTLVEIVVSGTGTSALEAGYCIMSRGSGSWEVVA

Physico‐chemical properties

protein length:	1234 AA
molecular weight:	135594,99960 Da
isoelectric point:	4,81855
aromaticity:	0,09076
hydropathy:	-0,27626

Domain architecture

UPW42648.1

1 1234 aa

ATT 90–217 · ATT 341–489 · STR 627–722 · RBD 949–1086 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171 Coil IPR015406

IPR055385
ATT

IPR055385 IPR032876 IPR013783 Coil

IPR036116
STR

IPR036116

IPR003961
STR

IPR003961

UPW42648.1

11234 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0014
STR

DC_0014

UPW42648.1

11234 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	3	876	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	90	217	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	341	489	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR013783	STR	IPR013783	627	720	Merged direct domain	Immunoglobulin-like fold	Central	Low	Positional only	144 proteins / 144 hits
IPR036116	STR	IPR036116	627	716	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR003961	STR	DC_0003	628	722	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
Coil	Unmapped	-	839	859	Coils	Coil	-	-	-	-
Coil	Unmapped	-	893	913	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	949	1086	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

UPW42648.1

1 1234 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	500	500	0,8594
Central domain	501	1052	553	0,0639
C-terminal	1053	1234	181	0,6611

Note: Constraints were applied during segmentation.
Fixed 46 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage NPat [NCBI] · taxon 2935708

Uroviricota Caudoviricetes Drexlerviridae Webervirus Webervirus NPat

Host

Klebsiella pneumoniae [NCBI] · taxon 573

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)