Phage RBP Database

Genbank accession

XYM58007.1 [GenBank]

Protein name

tail sheath

RBP type

TSP

Evidence DepoScope

Probability 0,99

Seq2Symm

I confidence 0,474

I	0,474
C1	0,024
C10-C17	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MALNLASPGIVVREVDLTIGRVDPTSERVAAVVAPFAQGPVEIPTLVENESDLLANFGRAYDADRHYEHWMVASSFLSYGGSLRVVRADDADMKNAFFGSTTTAPKIKSLDHYEDLGYSDNTISGVTFAARNPGSWGNGMKVAIIDGRADQVITGISTAGITVGMGVSQSVPDGTVVAGVGSTTLLDGHFKGVISGVGTNSIDLKFVQHVTAAGVTTQKDYQEGGIYRFANPDTKDLIVYNNTGVFVSTITTDTNPTDWFDAQKITLAGGEISWNQVAPRPGTSAYAADRGGRFDETHIVVVDDDGDITGNPGTILEKHLQLSKAKDGVFANGSVSYYREFVRSGSGYVFAGGEPSGTVAIDFKTGADAGAGFVLVSDKAWDQNAKNISFAGYGNTTATLAGGLNYNGTSGLTTTTSLKADVGKINAGYEVLENPDEYSVDFILQGSGNYTKEETQAIGQKAIDIAERRKDAVAFLSPYRGAIFNESATESVVRDSETITDNVIGHFSPVTSSTFAVFDSGYKYMYDRFSDKFRYVPLNGDTAGCCVRTDINAFPWFSPAGTSRGAILNAVKLPYNPSKTQRDRLYTNRVNPVTFIPGSGIVLFGDKTGYATASAFDRINVRRLFLYIEKAIAAVARDQLFEFNDEITRSSFVNAVEPFLREVQSNRGIQEFVVVCDETNNTSAVIDRNEFVADIFVKPARSINFVGLTFVATRTGVSFEEIIGNV

Physico‐chemical properties

protein length:	726 AA
molecular weight:	78049,91330 Da
isoelectric point:	4,91256
aromaticity:	0,10193
hydropathy:	-0,13347

Domain architecture

XYM58007.1

1 726 aa

STR 25–159 · STR 373–580 · TAS 581–608 · TAS 614–712 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR052042
Unmapped

IPR052042

G3DSA:3.40.50.11780
STR

G3DSA:3.40.50.11780 G3DSA:3.40.50.11780 IPR020287

G3DSA:3.40.50.11780
STR

G3DSA:3.40.50.11780

IPR035089
TAS

IPR035089

XYM58007.1

1726 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1736
ATT

DC_1736 DC_1098

XYM58007.1

1726 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR052042	Unmapped	-	1	711	InterPro	Tail sheath structural protein	-	-	-	-
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	25	159	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	373	577	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	373	580	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
IPR035089	TAS	DC_0885	451	608	InterPro cluster	Tail sheath protein, subtilisin-like domain	Central	High	Text match	30 proteins / 30 hits
IPR020287	TAS	DC_0666	614	712	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XYM58007.1

1 726 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	136	136	0,7398
Central domain	137	335	200	0,7686
C-terminal	336	726	390	0,2749

Note: Constraints were applied during segmentation.
Fixed 20 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Synechococcus phage Sf-CH5 [NCBI] · taxon 3413215

Synechococcus phage Sf-CH5

Host

Synechococcus [NCBI] · taxon 1129

Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus

Genbank protein accession

XYM58007.1 [NCBI]

Genbank nucleotide accession

PV340852 [NCBI]

CDS location

range 75311 -> 77491
strand +

CDS

ATGGCGTTAAACCTAGCATCTCCTGGCATTGTAGTAAGAGAGGTTGACCTCACTATTGGTAGAGTTGATCCTACCTCCGAAAGAGTTGCTGCGGTTGTAGCGCCTTTCGCTCAAGGGCCAGTCGAGATTCCAACGTTAGTCGAGAATGAATCAGATCTACTCGCTAACTTTGGAAGAGCATATGATGCTGACAGACACTATGAGCATTGGATGGTTGCTTCATCCTTCCTCTCATACGGTGGTTCACTCCGCGTAGTCAGAGCAGATGACGCGGACATGAAGAATGCTTTCTTCGGTTCTACCACCACTGCACCAAAGATCAAGAGTCTAGACCACTACGAAGACCTCGGATATTCTGATAACACTATTTCTGGTGTAACCTTTGCCGCAAGAAACCCTGGATCATGGGGTAACGGAATGAAGGTTGCCATCATCGATGGTCGTGCCGATCAAGTTATCACCGGAATCTCTACCGCTGGAATTACAGTTGGTATGGGTGTCAGTCAGTCAGTTCCTGATGGAACCGTTGTTGCTGGAGTCGGTTCAACTACACTCCTAGACGGACATTTTAAAGGTGTCATTTCTGGTGTAGGAACTAACTCTATCGATCTTAAGTTTGTACAGCACGTTACCGCTGCTGGCGTTACAACTCAGAAAGATTATCAGGAAGGCGGCATCTACAGATTTGCTAACCCAGACACCAAAGATCTAATCGTTTATAACAACACTGGTGTTTTCGTTTCTACGATCACTACTGATACAAATCCAACCGATTGGTTCGATGCTCAGAAGATCACCTTAGCTGGCGGTGAAATTTCTTGGAATCAAGTCGCTCCTCGCCCCGGAACTTCTGCATATGCAGCAGACAGAGGCGGTAGATTCGACGAAACTCACATCGTTGTAGTTGACGATGACGGAGATATCACCGGCAACCCCGGAACTATCCTAGAGAAGCATCTACAACTCTCCAAAGCAAAGGATGGTGTATTTGCTAACGGTTCTGTTTCTTACTACAGAGAGTTTGTAAGATCTGGTTCTGGTTATGTCTTCGCTGGTGGAGAACCTAGTGGAACAGTTGCAATCGACTTTAAGACTGGAGCAGATGCTGGTGCTGGATTCGTTCTAGTATCCGATAAAGCATGGGACCAAAACGCTAAGAACATTTCCTTCGCTGGATATGGTAACACCACTGCTACTCTTGCAGGTGGTCTAAACTATAACGGAACAAGCGGTCTAACCACCACTACTTCACTCAAGGCAGATGTTGGCAAGATCAACGCTGGTTACGAAGTACTAGAGAACCCCGATGAGTATTCTGTAGACTTCATCCTACAAGGTTCCGGTAACTACACCAAAGAAGAGACTCAAGCAATCGGTCAAAAGGCCATCGACATTGCAGAAAGAAGAAAGGATGCAGTCGCATTCCTATCACCCTATAGAGGTGCAATCTTCAATGAGTCTGCAACTGAGTCTGTTGTCAGAGATTCTGAGACCATCACTGATAACGTAATCGGTCACTTCTCACCTGTAACTTCTTCTACCTTCGCGGTATTCGATAGCGGTTACAAGTACATGTATGACCGCTTCTCAGATAAGTTCCGTTATGTACCACTAAACGGTGATACTGCTGGTTGCTGTGTAAGAACTGACATCAATGCATTCCCTTGGTTCTCACCCGCTGGAACTTCCAGAGGTGCAATCCTCAATGCTGTCAAACTACCCTACAACCCATCCAAGACTCAAAGAGATCGTCTCTATACCAACAGAGTCAACCCTGTAACCTTCATTCCTGGTTCCGGCATCGTACTCTTCGGTGACAAGACTGGTTACGCGACTGCTTCTGCATTCGACAGAATCAACGTCCGTCGCCTCTTCCTATATATTGAGAAGGCAATTGCCGCTGTTGCTAGAGATCAACTCTTCGAGTTCAACGACGAAATCACCAGAAGCAGCTTCGTTAATGCTGTTGAACCTTTCCTAAGAGAAGTTCAATCAAACCGTGGTATTCAGGAATTCGTGGTTGTTTGTGATGAGACCAATAACACTTCTGCTGTTATTGATCGTAACGAGTTTGTCGCTGACATTTTCGTCAAACCAGCCCGTTCAATCAACTTCGTCGGTCTCACCTTCGTCGCTACCCGCACGGGTGTTTCCTTTGAAGAAATCATCGGAAACGTTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)