Protein

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Genbank accession

XYM58007.1 [GenBank]

Protein name

tail sheath

RBP type

TSP

Evidence DepoScope

Probability 0,99

Protein sequence

MALNLASPGIVVREVDLTIGRVDPTSERVAAVVAPFAQGPVEIPTLVENESDLLANFGRAYDADRHYEHWMVASSFLSYGGSLRVVRADDADMKNAFFGSTTTAPKIKSLDHYEDLGYSDNTISGVTFAARNPGSWGNGMKVAIIDGRADQVITGISTAGITVGMGVSQSVPDGTVVAGVGSTTLLDGHFKGVISGVGTNSIDLKFVQHVTAAGVTTQKDYQEGGIYRFANPDTKDLIVYNNTGVFVSTITTDTNPTDWFDAQKITLAGGEISWNQVAPRPGTSAYAADRGGRFDETHIVVVDDDGDITGNPGTILEKHLQLSKAKDGVFANGSVSYYREFVRSGSGYVFAGGEPSGTVAIDFKTGADAGAGFVLVSDKAWDQNAKNISFAGYGNTTATLAGGLNYNGTSGLTTTTSLKADVGKINAGYEVLENPDEYSVDFILQGSGNYTKEETQAIGQKAIDIAERRKDAVAFLSPYRGAIFNESATESVVRDSETITDNVIGHFSPVTSSTFAVFDSGYKYMYDRFSDKFRYVPLNGDTAGCCVRTDINAFPWFSPAGTSRGAILNAVKLPYNPSKTQRDRLYTNRVNPVTFIPGSGIVLFGDKTGYATASAFDRINVRRLFLYIEKAIAAVARDQLFEFNDEITRSSFVNAVEPFLREVQSNRGIQEFVVVCDETNNTSAVIDRNEFVADIFVKPARSINFVGLTFVATRTGVSFEEIIGNV

Physico‐chemical properties

protein length:	726 AA
molecular weight:	78049,91330 Da
isoelectric point:	4,91256
aromaticity:	0,10193
hydropathy:	-0,13347

Domains

Domains [InterPro]

IPR052042
Unmapped
1–711

IPR052042

G3DSA:3.40.50.11780
STR
25–159

G3DSA:3.40.50.11780 DC_1098 IPR035089 IPR020287

DC_1736
ATT
53–246

DC_1736 G3DSA:3.40.50.11780

G3DSA:3.40.50.11780
STR
373–580

G3DSA:3.40.50.11780

XYM58007.1

1 726

Architecture

STR

ATT

STR

TAS

STR 25-52 | ATT 53-246 | STR 248-580 | TAS 581-608 | TAS 614-712 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR052042	Unmapped	-	1	711	InterPro	Tail sheath structural protein	-	-	-	-
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	25	159	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
DC_1736	ATT	DC_1736	53	246	Novel HMM	DC_1736	N-terminal	Low	Positional only	7 proteins / 7 hits
DC_1098	STR	DC_1098	248	375	Novel HMM	DC_1098	Central	Low	Positional only	21 proteins / 21 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	373	577	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
G3DSA:3.40.50.11780	STR	G3DSA:3.40.50.11780	373	580	Merged direct domain	G3DSA:3.40.50.11780	Central	Low	Positional only	39 proteins / 39 hits
IPR035089	TAS	DC_0885	451	608	InterPro cluster	Tail sheath protein, subtilisin-like domain	Central	High	Text match	30 proteins / 30 hits
IPR020287	TAS	DC_0666	614	712	InterPro cluster	Tail sheath protein, C-terminal domain	C-terminal	High	Text match	43 proteins / 43 hits

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

XYM58007.1

1 726

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	136	136	0,7398
Central domain	137	335	200	0,7686
C-terminal	336	726	390	0,2749

Note: Constraints were applied during segmentation.
Fixed 20 C-terminal predictions appearing before Central domain

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-136

Central
137-335

C-terminal
336-726

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Synechococcus phage Sf-CH5 [NCBI]	3413215	Viruses >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

XYM58007.1 [NCBI]

Genbank nucleotide accession

PV340852 [NCBI]

CDS location

range 75311 -> 77491
strand +

CDS

ATGGCGTTAAACCTAGCATCTCCTGGCATTGTAGTAAGAGAGGTTGACCTCACTATTGGTAGAGTTGATCCTACCTCCGAAAGAGTTGCTGCGGTTGTAGCGCCTTTCGCTCAAGGGCCAGTCGAGATTCCAACGTTAGTCGAGAATGAATCAGATCTACTCGCTAACTTTGGAAGAGCATATGATGCTGACAGACACTATGAGCATTGGATGGTTGCTTCATCCTTCCTCTCATACGGTGGTTCACTCCGCGTAGTCAGAGCAGATGACGCGGACATGAAGAATGCTTTCTTCGGTTCTACCACCACTGCACCAAAGATCAAGAGTCTAGACCACTACGAAGACCTCGGATATTCTGATAACACTATTTCTGGTGTAACCTTTGCCGCAAGAAACCCTGGATCATGGGGTAACGGAATGAAGGTTGCCATCATCGATGGTCGTGCCGATCAAGTTATCACCGGAATCTCTACCGCTGGAATTACAGTTGGTATGGGTGTCAGTCAGTCAGTTCCTGATGGAACCGTTGTTGCTGGAGTCGGTTCAACTACACTCCTAGACGGACATTTTAAAGGTGTCATTTCTGGTGTAGGAACTAACTCTATCGATCTTAAGTTTGTACAGCACGTTACCGCTGCTGGCGTTACAACTCAGAAAGATTATCAGGAAGGCGGCATCTACAGATTTGCTAACCCAGACACCAAAGATCTAATCGTTTATAACAACACTGGTGTTTTCGTTTCTACGATCACTACTGATACAAATCCAACCGATTGGTTCGATGCTCAGAAGATCACCTTAGCTGGCGGTGAAATTTCTTGGAATCAAGTCGCTCCTCGCCCCGGAACTTCTGCATATGCAGCAGACAGAGGCGGTAGATTCGACGAAACTCACATCGTTGTAGTTGACGATGACGGAGATATCACCGGCAACCCCGGAACTATCCTAGAGAAGCATCTACAACTCTCCAAAGCAAAGGATGGTGTATTTGCTAACGGTTCTGTTTCTTACTACAGAGAGTTTGTAAGATCTGGTTCTGGTTATGTCTTCGCTGGTGGAGAACCTAGTGGAACAGTTGCAATCGACTTTAAGACTGGAGCAGATGCTGGTGCTGGATTCGTTCTAGTATCCGATAAAGCATGGGACCAAAACGCTAAGAACATTTCCTTCGCTGGATATGGTAACACCACTGCTACTCTTGCAGGTGGTCTAAACTATAACGGAACAAGCGGTCTAACCACCACTACTTCACTCAAGGCAGATGTTGGCAAGATCAACGCTGGTTACGAAGTACTAGAGAACCCCGATGAGTATTCTGTAGACTTCATCCTACAAGGTTCCGGTAACTACACCAAAGAAGAGACTCAAGCAATCGGTCAAAAGGCCATCGACATTGCAGAAAGAAGAAAGGATGCAGTCGCATTCCTATCACCCTATAGAGGTGCAATCTTCAATGAGTCTGCAACTGAGTCTGTTGTCAGAGATTCTGAGACCATCACTGATAACGTAATCGGTCACTTCTCACCTGTAACTTCTTCTACCTTCGCGGTATTCGATAGCGGTTACAAGTACATGTATGACCGCTTCTCAGATAAGTTCCGTTATGTACCACTAAACGGTGATACTGCTGGTTGCTGTGTAAGAACTGACATCAATGCATTCCCTTGGTTCTCACCCGCTGGAACTTCCAGAGGTGCAATCCTCAATGCTGTCAAACTACCCTACAACCCATCCAAGACTCAAAGAGATCGTCTCTATACCAACAGAGTCAACCCTGTAACCTTCATTCCTGGTTCCGGCATCGTACTCTTCGGTGACAAGACTGGTTACGCGACTGCTTCTGCATTCGACAGAATCAACGTCCGTCGCCTCTTCCTATATATTGAGAAGGCAATTGCCGCTGTTGCTAGAGATCAACTCTTCGAGTTCAACGACGAAATCACCAGAAGCAGCTTCGTTAATGCTGTTGAACCTTTCCTAAGAGAAGTTCAATCAAACCGTGGTATTCAGGAATTCGTGGTTGTTTGTGATGAGACCAATAACACTTCTGCTGTTATTGATCGTAACGAGTTTGTCGCTGACATTTTCGTCAAACCAGCCCGTTCAATCAACTTCGTCGGTCTCACCTTCGTCGCTACCCGCACGGGTGTTTCCTTTGAAGAAATCATCGGAAACGTTTAA

Genome Context

Tertiary structure

PDB ID

c28283dfa871cd677aade34f4033168fd27476f133a9da0e2a04dc74fa2f04a6

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8908

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence