Protein

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Genbank accession
XHB37287.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,79
TF
Evidence RBPdetect2
Probability 0,79
Protein sequence
MSTTAPYQFSLSGTEIEKLLKSITEKLDKSAIDKTMEGTSVPSTPTVKAALNEVLKTVTGVDLRKAIQDAPDCNVFTDNYKTLLERGGFLFVGAPADIPKRNAISTTTFQGGETILLQSNEFGVPTVQYWNGTSKKWDDVDEAKAHSFEKTFNGTSKQELIKLPKTKFSIYTFKVMAKTNTNIHMMDLHVGLNYSGNTAWMTGTNDFYGSGKLFTPTVDYDGTNMTLSLTPKASTINVRCEVIAAY
Physico‐chemical
properties
protein length:246 AA
molecular weight: 27045,39240 Da
isoelectric point:6,83503
aromaticity:0,09350
hydropathy:-0,31341

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpaS_SD25
[NCBI] 		3326590 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XHB37287.1 [NCBI]
Genbank nucleotide accession
PQ249004.1 [NCBI]
CDS location
range 66514 -> 67254
strand +
CDS
ATGTCGACCACAGCACCATATCAATTCAGTCTGTCAGGTACAGAAATTGAAAAACTGTTAAAGTCAATCACTGAAAAGTTGGATAAATCAGCTATTGACAAGACGATGGAAGGTACTAGTGTTCCTTCAACACCTACAGTTAAAGCTGCACTCAACGAAGTATTGAAAACTGTAACAGGTGTTGACCTTCGTAAAGCTATCCAAGATGCGCCAGACTGTAACGTTTTCACTGATAACTACAAGACATTGCTTGAACGTGGTGGATTCTTATTTGTTGGTGCACCTGCAGATATTCCCAAACGTAATGCTATCAGTACGACAACTTTCCAAGGTGGTGAAACCATTTTACTCCAAAGTAATGAATTTGGAGTTCCGACTGTTCAATATTGGAATGGTACATCTAAGAAATGGGATGATGTGGATGAGGCTAAAGCTCATAGTTTTGAGAAGACTTTTAACGGTACGTCGAAACAGGAATTGATCAAGTTACCTAAAACCAAGTTCTCGATCTATACATTTAAAGTAATGGCAAAAACCAACACTAACATCCATATGATGGACTTACATGTTGGTTTGAATTATAGTGGTAATACTGCCTGGATGACAGGTACTAATGACTTTTATGGTTCGGGCAAGCTGTTTACACCAACCGTTGATTATGATGGTACTAACATGACGTTAAGTTTAACACCAAAAGCTAGTACCATCAACGTACGATGTGAGGTTATCGCAGCTTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3e35f72c450df12e39040d089c1fc213d85445d2e7a3bfaea6930b6ce1f37bc8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7164
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Vibrio parahaemolyticus phages Li,X., Chen,D. and Li,Y. 2023-06 — GenBank