Protein

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Genbank accession
YP_007001760.1 [GenBank]
Protein name
sericin 1 precursor-like protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,50
Protein sequence
MSQINTDAIRNQAGEGQGIDIANGGNISFNTDTLYVDATNDRVGFGTTLPQAKLHMIGGFGLNANTAPIIEGINIVTDSINGSPNIRVDTDGPSHIFTTASTGNFTINIGTGTNAGTDLSSVMDVGQYISVTAIVSLGASSGFCNTINLGGAANTTYWVGGEVPDEVGDTSGYDIYYIQIHRNAASTYYVLAGKGHYSS
Physico‐chemical
properties
protein length:199 AA
molecular weight: 20626,34030 Da
isoelectric point:4,30921
aromaticity:0,08040
hydropathy:-0,06533

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_007001760.1
1 199
Domain Start End Length (AA) Confidence
N-terminal 1 18 18 0,6378
Central domain 19 188 171 0,0209
C-terminal 189 199 10 0,9977
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-18
Central
19-188
C-terminal
189-199

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-MbCM6
[NCBI] 		3126011 Uroviricota > Caudoviricetes > Pantevenvirales > Namakavirus > Namakavirus smbcm6
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007001760.1 [NCBI]
Genbank nucleotide accession
NC_019444 [NCBI]
CDS location
range 29356 -> 29955
strand +
CDS
ATGTCACAAATAAATACAGACGCAATTAGAAATCAAGCAGGAGAGGGTCAAGGTATTGATATTGCCAATGGTGGTAATATTTCATTTAATACTGATACTCTTTACGTTGATGCTACAAACGATCGCGTTGGGTTTGGTACTACATTACCCCAAGCAAAGTTGCACATGATTGGTGGATTTGGTCTAAATGCCAATACTGCTCCTATTATTGAAGGTATCAATATTGTTACTGATTCTATTAATGGATCACCCAACATTAGAGTTGATACTGATGGTCCAAGTCATATATTTACAACTGCAAGCACAGGTAACTTTACAATTAATATTGGCACAGGAACAAATGCTGGCACAGATTTAAGTAGTGTTATGGATGTTGGGCAGTATATTTCTGTCACTGCAATTGTATCATTAGGTGCATCTTCAGGTTTCTGTAATACCATCAATCTGGGTGGTGCTGCTAATACTACATATTGGGTTGGTGGTGAAGTACCTGATGAAGTAGGTGATACATCTGGATATGACATATATTATATTCAGATACATAGAAATGCTGCATCCACGTATTACGTCCTTGCTGGCAAGGGTCACTACTCTTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
068681d2e57723ff912e351c8b259e6b28a7cfd7cc5f2eb5da27bc8cc8eb132c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7296
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50