Protein

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Genbank accession
YP_001285463.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
Protein sequence
MSFNISNNVITQSGTDTDLSGLAGVTGVTVTTYSGFGTYPAKKIYNLGNAKLEIAGTLTHDPSKEVMTIGGGANNRPIIHILSSGTYNYGVETTFQGGTHYSVGEGLYIRAYLSGSLRQFNGSQAGIRNQGQFNWLGGTISSGRSIITDSGGNIKVRRGIFRPWSTNNTGTKNYSPRIGFVNGDVDVDGIKVFGNDGHFFGFALASDTTTAFTNIEIQGNTNFASAIAGDLLGSAATNKPHALIDNVSSLANGNQFSGRAWQNRVNTWTNYGGGVDLKDELSDTTSGDNAARGIVIAQKQVQPTVVNTAGTLLQDVKVLVKEESDGNEATSAFLGNFSATDITHYATARNQIETTNASGVTPQIVTGLVVGYKASKSVNMTFNVKTIGGANEQTTRQFGYNYLLNEGRINTAGTGVLSPTFTMINDLTVTETTKATVDAYTTLESPEKLYDGAKAYLYDNWAGEGDLLCTRSGDTIDLGNNSLVVDATAAQAISVSGTTITIKANTFSGNISTGTGTITEVNGAAIAGTVSDVNGVRSTATLTLTGLKPNTEVRVYNSSTGAEVGGVELSGTSESFALTIPAVDIVIHALGYLNQQILNLNTTADLTLPITQVLDRQYNNPV
Physico‐chemical
properties
protein length:622 AA
molecular weight: 65337,45560 Da
isoelectric point:5,13577
aromaticity:0,07556
hydropathy:-0,16109

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_001285463.1
1 622
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,3078
Central domain 15 269 256 0,9319
C-terminal 270 622 352 0,3241
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-14
Central
15-269
C-terminal
270-622

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Syn5
[NCBI] 		2914003 Uroviricota > Caudoviricetes > Autographivirales > Voetvirus syn5 >
Host Synechococcus sp. WH 8109
[NCBI] 		166314 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_001285463.1 [NCBI]
Genbank nucleotide accession
NC_009531 [NCBI]
CDS location
range 39335 -> 41203
strand +
CDS
ATGTCATTCAACATTAGTAATAACGTTATTACTCAATCAGGAACAGACACGGACCTCTCAGGGCTGGCAGGCGTCACAGGTGTGACCGTAACCACCTACTCGGGTTTTGGTACTTACCCTGCAAAGAAAATCTACAACCTAGGTAACGCCAAGCTGGAGATTGCCGGCACTCTTACTCATGACCCGTCTAAAGAAGTCATGACCATCGGGGGTGGCGCTAACAACAGACCTATTATTCACATCCTTAGTAGTGGTACTTACAACTACGGTGTAGAGACTACCTTCCAAGGTGGTACCCACTACAGCGTGGGCGAGGGTCTGTATATCCGCGCATACTTGTCCGGCTCCTTGCGTCAGTTTAATGGCAGCCAGGCCGGCATCCGTAACCAAGGCCAGTTCAACTGGCTGGGTGGCACGATCTCTAGTGGTCGTTCGATTATTACGGATAGCGGTGGCAACATCAAAGTGCGCCGTGGCATCTTCCGCCCGTGGTCAACTAACAACACGGGTACCAAGAACTACAGCCCCCGTATCGGTTTCGTTAATGGGGACGTAGATGTTGACGGTATCAAGGTGTTTGGTAACGACGGCCATTTCTTTGGCTTTGCTCTGGCATCTGATACTACTACTGCCTTTACTAACATTGAGATTCAAGGTAACACCAATTTCGCTAGTGCGATCGCAGGTGACCTTCTTGGTAGTGCTGCAACAAACAAGCCCCACGCGCTGATCGACAACGTGAGCTCGCTGGCAAACGGTAACCAGTTCTCCGGTCGTGCATGGCAAAACCGTGTCAACACATGGACGAACTACGGCGGCGGCGTAGACCTAAAGGACGAGTTGTCAGATACCACGTCAGGCGATAATGCTGCGCGAGGTATCGTGATCGCACAGAAGCAAGTGCAGCCTACAGTTGTAAATACTGCGGGTACTCTCCTGCAAGACGTAAAGGTCTTGGTAAAAGAAGAGAGCGATGGCAACGAAGCCACTAGCGCCTTCCTGGGCAACTTTAGTGCTACAGATATCACGCACTATGCGACGGCTCGTAACCAGATCGAAACTACTAACGCTTCGGGTGTAACCCCACAGATCGTTACCGGTTTGGTTGTTGGCTACAAGGCCAGCAAGTCCGTGAACATGACGTTCAACGTCAAGACCATCGGCGGTGCTAACGAGCAAACTACACGTCAGTTTGGTTACAACTACCTGCTGAACGAGGGTCGAATCAACACAGCCGGTACGGGTGTGCTGTCACCTACGTTCACGATGATTAACGACCTGACGGTGACTGAGACCACCAAGGCGACGGTGGATGCTTACACCACGTTGGAAAGCCCTGAGAAGCTCTACGACGGTGCTAAGGCTTATCTCTACGATAACTGGGCCGGTGAGGGCGATCTACTTTGCACGCGGTCTGGCGACACTATCGACCTGGGTAACAACAGCCTGGTGGTTGATGCCACTGCTGCACAAGCTATCTCCGTCAGTGGTACCACCATCACGATCAAGGCCAATACATTCAGCGGAAACATCTCCACTGGTACTGGCACGATTACTGAGGTTAATGGTGCGGCTATTGCCGGTACGGTTTCTGACGTCAACGGTGTTCGTTCTACCGCCACCCTTACCCTGACCGGCCTCAAGCCAAACACTGAGGTTCGTGTTTACAACTCCAGCACTGGTGCTGAGGTGGGCGGCGTCGAGCTTTCTGGCACGTCTGAATCCTTTGCTCTAACGATCCCTGCTGTGGACATTGTTATCCACGCCCTCGGTTACCTCAACCAGCAGATTCTCAATCTAAACACGACTGCTGATTTGACCCTGCCCATTACTCAGGTGCTCGATCGACAGTACAACAACCCCGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4f91ad0ef6ca389b7ddcf896303411cb97b850d48b5077ef1e55407cc4eca848
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4878
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50