Protein

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Genbank accession
YP_001285463.1 [GenBank]
Protein name
structural protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,66
TSP
Evidence RBPdetect2
Probability 0,87
Seq2Symm
C1 confidence 0,974
C1 0,974
C2 0,004
C3 0,003
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MSFNISNNVITQSGTDTDLSGLAGVTGVTVTTYSGFGTYPAKKIYNLGNAKLEIAGTLTHDPSKEVMTIGGGANNRPIIHILSSGTYNYGVETTFQGGTHYSVGEGLYIRAYLSGSLRQFNGSQAGIRNQGQFNWLGGTISSGRSIITDSGGNIKVRRGIFRPWSTNNTGTKNYSPRIGFVNGDVDVDGIKVFGNDGHFFGFALASDTTTAFTNIEIQGNTNFASAIAGDLLGSAATNKPHALIDNVSSLANGNQFSGRAWQNRVNTWTNYGGGVDLKDELSDTTSGDNAARGIVIAQKQVQPTVVNTAGTLLQDVKVLVKEESDGNEATSAFLGNFSATDITHYATARNQIETTNASGVTPQIVTGLVVGYKASKSVNMTFNVKTIGGANEQTTRQFGYNYLLNEGRINTAGTGVLSPTFTMINDLTVTETTKATVDAYTTLESPEKLYDGAKAYLYDNWAGEGDLLCTRSGDTIDLGNNSLVVDATAAQAISVSGTTITIKANTFSGNISTGTGTITEVNGAAIAGTVSDVNGVRSTATLTLTGLKPNTEVRVYNSSTGAEVGGVELSGTSESFALTIPAVDIVIHALGYLNQQILNLNTTADLTLPITQVLDRQYNNPV
Physico‐chemical
properties
protein length:622 AA
molecular weight: 65337,45560 Da
isoelectric point:5,13577
aromaticity:0,07556
hydropathy:-0,16109

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_001285463.1
1 622 aa
Domain Start End Length (AA) Confidence
N-terminal 1 14 14 0,3078
Central domain 15 269 256 0,9319
C-terminal 270 622 352 0,3241
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Synechococcus phage Syn5 [NCBI] · taxon 2914003
Uroviricota Caudoviricetes Autographivirales Voetvirus Voetvirus syn5
Host
Synechococcus sp. WH 8109 [NCBI] · taxon 166314
Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 8109

Coding sequence (CDS)

Genbank protein accession
YP_001285463.1 [NCBI]
Genbank nucleotide accession
NC_009531 [NCBI]
CDS location
range 39335 -> 41203
strand +
CDS
ATGTCATTCAACATTAGTAATAACGTTATTACTCAATCAGGAACAGACACGGACCTCTCAGGGCTGGCAGGCGTCACAGGTGTGACCGTAACCACCTACTCGGGTTTTGGTACTTACCCTGCAAAGAAAATCTACAACCTAGGTAACGCCAAGCTGGAGATTGCCGGCACTCTTACTCATGACCCGTCTAAAGAAGTCATGACCATCGGGGGTGGCGCTAACAACAGACCTATTATTCACATCCTTAGTAGTGGTACTTACAACTACGGTGTAGAGACTACCTTCCAAGGTGGTACCCACTACAGCGTGGGCGAGGGTCTGTATATCCGCGCATACTTGTCCGGCTCCTTGCGTCAGTTTAATGGCAGCCAGGCCGGCATCCGTAACCAAGGCCAGTTCAACTGGCTGGGTGGCACGATCTCTAGTGGTCGTTCGATTATTACGGATAGCGGTGGCAACATCAAAGTGCGCCGTGGCATCTTCCGCCCGTGGTCAACTAACAACACGGGTACCAAGAACTACAGCCCCCGTATCGGTTTCGTTAATGGGGACGTAGATGTTGACGGTATCAAGGTGTTTGGTAACGACGGCCATTTCTTTGGCTTTGCTCTGGCATCTGATACTACTACTGCCTTTACTAACATTGAGATTCAAGGTAACACCAATTTCGCTAGTGCGATCGCAGGTGACCTTCTTGGTAGTGCTGCAACAAACAAGCCCCACGCGCTGATCGACAACGTGAGCTCGCTGGCAAACGGTAACCAGTTCTCCGGTCGTGCATGGCAAAACCGTGTCAACACATGGACGAACTACGGCGGCGGCGTAGACCTAAAGGACGAGTTGTCAGATACCACGTCAGGCGATAATGCTGCGCGAGGTATCGTGATCGCACAGAAGCAAGTGCAGCCTACAGTTGTAAATACTGCGGGTACTCTCCTGCAAGACGTAAAGGTCTTGGTAAAAGAAGAGAGCGATGGCAACGAAGCCACTAGCGCCTTCCTGGGCAACTTTAGTGCTACAGATATCACGCACTATGCGACGGCTCGTAACCAGATCGAAACTACTAACGCTTCGGGTGTAACCCCACAGATCGTTACCGGTTTGGTTGTTGGCTACAAGGCCAGCAAGTCCGTGAACATGACGTTCAACGTCAAGACCATCGGCGGTGCTAACGAGCAAACTACACGTCAGTTTGGTTACAACTACCTGCTGAACGAGGGTCGAATCAACACAGCCGGTACGGGTGTGCTGTCACCTACGTTCACGATGATTAACGACCTGACGGTGACTGAGACCACCAAGGCGACGGTGGATGCTTACACCACGTTGGAAAGCCCTGAGAAGCTCTACGACGGTGCTAAGGCTTATCTCTACGATAACTGGGCCGGTGAGGGCGATCTACTTTGCACGCGGTCTGGCGACACTATCGACCTGGGTAACAACAGCCTGGTGGTTGATGCCACTGCTGCACAAGCTATCTCCGTCAGTGGTACCACCATCACGATCAAGGCCAATACATTCAGCGGAAACATCTCCACTGGTACTGGCACGATTACTGAGGTTAATGGTGCGGCTATTGCCGGTACGGTTTCTGACGTCAACGGTGTTCGTTCTACCGCCACCCTTACCCTGACCGGCCTCAAGCCAAACACTGAGGTTCGTGTTTACAACTCCAGCACTGGTGCTGAGGTGGGCGGCGTCGAGCTTTCTGGCACGTCTGAATCCTTTGCTCTAACGATCCCTGCTGTGGACATTGTTATCCACGCCCTCGGTTACCTCAACCAGCAGATTCTCAATCTAAACACGACTGCTGATTTGACCCTGCCCATTACTCAGGTGCTCGATCGACAGTACAACAACCCCGTGTAA

Genome Context

Tertiary structure

YP_001285463.1
ESMFold structure
Source ESMFold
pLDDT 48.8
Oligomeric state monomer
Download structure