Phage RBP Database

Genbank accession

ADP00077.1 [GenBank]

Protein name

tail tube protein B

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C1 confidence 0,086 truncated

C1	0,086
C6	0,081
I	0,062

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MASVTQKIPNYVLGISQQPDEKKFPGQVNDLVNGLPDVVEQLTKRPGSHLISAISPSTAANSKWFTIYTRDDESYIGQVAADGGVKIFRCSDGVEIPVDYANIAGSGVATYLDNTALSDEKSSDIQALTINETTFFVNRRKTVEMKRDAASKSPTQPFEAYIQLDSIAYGKQYALDIYDPSDNSTVSYTRATSIAADEDVSLDGTSSTGANQPGNGDCDGAGREYVTVSTGTSIHSTSPPNASAGGKTNLRYEMDARCTPQPDDDHTDSEAQDNYHDTYQTYAKLQFGGEGWTTNDTHQHTSEKGLTTTVKITNHVTITTRANIAMVRPEATSSNAEEHVSADGILGELKATLDAISGTGITCTKVGNGLHLYRATKFGVTTPEKTLMSITTSEVNTIADLPSTCRHGYVVRVVNSEENQDDYFLKFSAEGIAEDIDQTGTYARSSNTITVTAASHGLSNGDQIILDITSGGATDGFYTIANVTTNTFTVTDSASGTISAGETCSFTPARFGEGVWEEVVQPGKDIEIDNTTMPIALTRVLPGSFSINGGGSQTYSNGAFRFSYPDWYKRDCGDDITNPEPSFIGQTIQKMVFFRNRIALLSAENVILSRVNDFYNFWNKTAMAISNADPIDLQSSSTYPTKLYDAVEQAGGLVIFSASEQFLLSSGAEALLTPETAKISYVSSHAFNPDTSPIELGTTIGFLNSTAKNTRFFEMAAVSQREEPTIVEQSKSIYNLFPVNTSMMTGSVENQMVLFGVDSTLYTASNEVWGYKFYVSEGRRSQSAWFRWTLPNNLVYHSIIDDVYYAVLNTGSTFTFEKFDIKIKSDTLMIGDAPEDNRVHLDTKKTFASGDLTYNSATDVTTFTLGAGYYSTRNLSAYCITDSDDLGKSYDIPSSAITGTAPNQTVTLPGNWKTSTEAGASTSSVNTDVIIGYEYEFEVELPTIYMMRPEGDKMASETRGSLVIHRMNFDFGDVGVIDVTLKRKGRDDYTYTVESKEWDNILASTPAIASSYLHTIPVYDRNTNLTVQIKSNHPSPATIHSMNWEGDYSPKYYSRV

Physico‐chemical properties

protein length:	1056 AA
molecular weight:	115189,75000 Da
isoelectric point:	4,69436
aromaticity:	0,09470
hydropathy:	-0,37491

Domain architecture

ADP00077.1

1 1056 aa

TTP 1–189 · TTP 315–430 · STR 435–511 · TTP 512–1054 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR058003
TTP

IPR058003 IPR058003 IPR023366 IPR058003

ADP00077.1

11056 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0173
ATT

DC_0173 DC_0173

ADP00077.1

11056 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR058003	TTP	DC_0684	1	189	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits
IPR058003	TTP	DC_0684	315	430	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits
IPR023366	STR	IPR023366	435	511	Merged direct domain	ATP synthase subunit alpha, N-terminal domain-like superfamily	Central	Low	Positional only	44 proteins / 44 hits
IPR058003	TTP	DC_0684	512	1054	InterPro cluster	Tail tubular protein gp12	Central	High	Text match	1810 proteins / 1902 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

ADP00077.1

1 1056 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	142	142	0,7500
Central domain	143	342	201	0,6565
C-terminal	343	1056	713	0,4502

Note: Constraints were applied during segmentation.
Fixed 50 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Cyanophage NATL1A-7 [NCBI] · taxon 445693

Uroviricota Caudoviricetes Autographivirales Cheungvirus Cheungvirus NATL1A7

Host

Prochlorococcus marinus str. NATL1A [NCBI] · taxon 167555

Cyanobacteriota Cyanophyceae Synechococcales Prochlorococcaceae Prochlorococcus Prochlorococcus marinus

Genbank protein accession

ADP00077.1 [NCBI]

Genbank nucleotide accession

GU071102 [NCBI]

CDS location

range 1 -> 47741
strand -

CDS

ATGGCTAGTGTTACCCAGAAGATACCTAACTATGTGCTAGGTATCAGTCAACAACCAGATGAAAAGAAATTTCCAGGTCAAGTAAACGACCTTGTGAATGGCTTACCTGATGTTGTAGAACAATTAACTAAACGTCCTGGCAGTCATTTGATATCTGCTATATCTCCATCTACTGCTGCTAATTCAAAATGGTTTACTATTTATACAAGAGATGATGAATCTTATATTGGACAAGTTGCAGCTGATGGAGGTGTTAAAATATTTAGATGTAGTGATGGTGTTGAGATACCCGTGGACTATGCAAATATTGCTGGATCAGGTGTCGCAACTTACTTAGATAATACTGCATTATCAGATGAGAAGTCTTCAGATATACAGGCGTTAACAATTAACGAAACAACATTCTTTGTTAACAGACGTAAGACTGTTGAGATGAAAAGAGATGCAGCATCTAAATCTCCTACTCAACCATTTGAAGCTTACATACAACTTGATAGTATAGCTTACGGTAAACAGTATGCTTTAGATATATACGATCCTTCTGATAACTCAACAGTTTCTTATACACGTGCTACTTCGATAGCAGCTGATGAAGATGTGTCTCTTGATGGTACAAGTTCTACAGGAGCTAACCAACCAGGTAATGGAGACTGTGATGGAGCTGGTAGAGAATATGTAACAGTTAGTACAGGTACATCGATTCATAGTACATCACCTCCTAATGCAAGTGCAGGTGGTAAGACTAATCTTAGGTATGAGATGGATGCTAGATGCACCCCTCAACCTGACGATGATCATACTGATTCAGAAGCCCAAGATAATTATCACGACACATACCAAACTTATGCTAAATTACAATTTGGTGGAGAAGGTTGGACTACAAATGATACTCATCAACATACTTCTGAGAAGGGGCTTACTACTACTGTAAAGATTACTAACCATGTAACTATAACTACTAGAGCTAATATAGCAATGGTACGTCCAGAAGCTACATCCTCTAATGCTGAAGAACATGTATCAGCAGATGGTATATTAGGGGAACTTAAAGCTACATTAGATGCTATATCTGGTACAGGTATTACATGTACTAAAGTTGGTAACGGTTTACATTTATATCGGGCTACAAAATTTGGTGTAACAACACCTGAAAAAACCTTAATGAGTATTACTACAAGTGAAGTAAATACTATTGCTGATCTACCTAGTACATGCCGTCATGGTTATGTAGTACGTGTAGTAAATAGTGAAGAGAATCAAGATGATTACTTCCTTAAGTTTAGTGCTGAAGGTATAGCTGAAGATATAGATCAGACTGGTACCTACGCTAGATCTAGTAATACAATTACTGTAACAGCTGCTAGTCATGGTCTTTCAAATGGAGATCAAATCATATTAGATATAACCAGCGGTGGAGCAACAGACGGATTCTATACTATTGCTAACGTAACAACTAATACATTTACTGTTACAGATTCAGCTTCTGGAACTATCAGTGCAGGTGAAACTTGTTCGTTCACACCAGCTCGCTTCGGAGAGGGCGTGTGGGAAGAGGTAGTACAACCTGGTAAAGATATAGAGATAGATAATACAACGATGCCTATAGCCCTTACTAGGGTGCTTCCAGGCTCATTCTCAATTAATGGTGGTGGTTCTCAAACTTACTCTAATGGAGCTTTCAGATTCTCTTATCCTGATTGGTATAAACGAGACTGTGGTGATGACATTACAAACCCAGAACCTTCATTCATAGGCCAGACTATTCAAAAGATGGTATTCTTCCGTAATAGAATAGCCTTGTTAAGTGCTGAGAATGTTATCTTATCTAGAGTTAATGACTTCTATAATTTTTGGAACAAAACTGCAATGGCAATTTCTAATGCAGATCCAATTGATTTACAGTCTAGCTCTACATATCCAACCAAATTATATGATGCTGTTGAACAAGCTGGTGGTTTAGTTATCTTTAGTGCTAGTGAACAGTTCTTATTAAGTTCAGGTGCCGAGGCTCTCTTGACCCCTGAGACTGCTAAGATCAGTTATGTATCATCACACGCTTTTAACCCTGATACTAGTCCTATTGAGTTAGGTACTACTATAGGATTCTTAAATAGTACAGCTAAAAATACCCGTTTCTTTGAAATGGCAGCTGTGTCTCAAAGAGAAGAACCTACCATAGTAGAACAAAGTAAAAGTATATATAACCTATTTCCTGTTAATACCAGTATGATGACTGGTTCAGTAGAGAACCAAATGGTATTATTTGGTGTAGATAGTACATTATACACTGCATCTAATGAAGTATGGGGTTATAAATTTTATGTTTCAGAAGGTAGAAGATCTCAATCAGCTTGGTTTAGATGGACATTACCTAATAACTTAGTATATCATTCTATTATTGATGATGTATATTATGCAGTACTTAATACAGGTTCTACATTTACCTTTGAAAAATTTGACATAAAAATTAAATCAGACACATTAATGATAGGGGATGCTCCAGAAGATAATAGGGTACACTTAGATACTAAGAAAACCTTTGCATCTGGAGACTTAACATATAATAGTGCAACTGATGTAACAACGTTTACATTAGGAGCTGGTTATTATAGTACTAGAAACTTATCAGCATACTGTATAACAGATAGTGATGATCTAGGTAAGAGTTATGATATACCTTCCTCTGCTATTACTGGTACAGCACCTAACCAAACAGTTACCTTACCTGGTAATTGGAAGACTTCTACAGAAGCTGGTGCCTCTACAAGTTCAGTTAACACTGATGTTATAATAGGATATGAGTATGAATTTGAAGTTGAACTACCTACGATATACATGATGAGACCAGAGGGAGATAAAATGGCTTCCGAAACACGTGGGTCTCTTGTTATACATAGGATGAACTTTGACTTTGGAGATGTTGGTGTTATAGATGTTACATTAAAACGTAAAGGTAGAGATGATTATACATATACAGTTGAATCTAAAGAGTGGGATAACATACTAGCTAGTACACCTGCTATCGCAAGTAGCTACCTACATACCATACCAGTCTATGATAGAAACACAAACCTAACAGTACAAATTAAATCTAATCACCCTTCACCTGCCACTATACATTCAATGAATTGGGAGGGTGACTATTCACCTAAATACTATTCACGTGTCTAA

Title	Authors	Date	PMID	Source
The Genome Sequence of Cyanophage NATL1A-7	Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B.	2011-09-23	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature