Phage RBP Database

Genbank accession

XCH40339.1 [GenBank]

Protein name

tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,42

Seq2Symm

C1 confidence 0,999

C1	0,999
C3	0,030
C2	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MYPIPCFFLTLSGGGTEPLPPGSVKKIAFTRDQTTGIKRSMAILLTDGRLYAQGDNAWGECADGTVSPFYDHWNLAAQGVADVFGAGKAFVVKYNSGGWQFCGDLSQFTGSGGIYVTWTSFPSSITGTVALADLASVSGANGNTLWLMTNGRLYGSGTNSNGCLGANNTNIFSTPRSISASCLRAFSLNACVTYLNNVGTARVCGMTYSINGTTTTQTQSFIDVAVAPTTNVDTGITAPVYVKEWMSNESNSIAIGSYAADDNDNYLFCRNIVPGFTTSTYVKVSDFGPFTDFRVIDGGQSRFFIADNVLYGIGDVPRNLGLGTTDSTQVSTPTPVPVPTGKDWDLSKLTYIADMKGNTLTSGGTFGHWMVYDNNLYYTGFSYGFFNSNDTSYVFVNVPESSFEGTTADAITTGSIPYAIKGSKGQMTWTVEPANAEIYDISFTSSAPNIATVDSNGIMTFLEEGSFDITMTAKTGSGDDAKTLTDTSGGYVSIFSVTTDSVPAKQVGDVFVFMDKNSPDYTPGPNIIGMEFSPANVDTSFIDGEFTTTDPSVVEVSPDGYLTCIASGDCRCGVRLIYREGQVEAFDDSYVSVLEPTATIPPDGGGIIT

Physico‐chemical properties

protein length:	609 AA
molecular weight:	64658,02850 Da
isoelectric point:	4,23692
aromaticity:	0,11494
hydropathy:	-0,04860

Domain architecture

XCH40339.1

1 609 aa

STR 11–393 · STR 407–487 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR009091
STR

IPR009091 G3DSA:2.60.40.1080

IPR009091
STR

IPR009091 IPR003343

IPR008964
RBD

IPR008964

IPR003343
STR

IPR003343

XCH40339.1

1609 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0918
STR

DC_0918 DC_0179

DC_1711
RBD

DC_1711

XCH40339.1

1609 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR009091	STR	IPR009091	11	210	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
IPR009091	STR	IPR009091	40	393	Merged direct domain	Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II	Central	Low	Positional only	141 proteins / 141 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	407	487	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	410	483	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	418	477	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
IPR003343	STR	DC_0008	420	483	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XCH40339.1

1 609 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	86	86	0,2157
Central domain	87	427	342	0,8577
C-terminal	428	609	181	0,0645

Note: Constraints were applied during segmentation.
Fixed 16 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage vB_SEnST11_KE22 [NCBI] · taxon 3161173

Uroviricota Caudoviricetes Seunavirus Salmonella phage vB_SEnST11_KE22

Host

Salmonella enteritidis [NCBI] · taxon 149539

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

Genbank protein accession

XCH40339.1 [NCBI]

Genbank nucleotide accession

PP856721 [NCBI]

CDS location

range 97789 -> 99618
strand -

CDS

ATGTATCCTATTCCTTGCTTTTTCCTGACTCTCTCAGGTGGCGGGACTGAACCACTACCACCAGGAAGTGTTAAGAAAATTGCATTCACAAGAGATCAGACCACAGGCATCAAGAGGTCTATGGCAATTTTGCTGACAGACGGAAGACTTTATGCTCAGGGTGACAACGCCTGGGGCGAGTGTGCGGATGGAACCGTGAGTCCATTTTACGATCACTGGAATCTTGCTGCTCAAGGTGTTGCTGATGTCTTTGGTGCTGGTAAGGCATTTGTTGTAAAATACAACAGCGGCGGTTGGCAGTTCTGTGGAGATCTGTCACAATTTACCGGAAGTGGTGGTATTTATGTCACATGGACAAGCTTCCCATCTTCCATCACAGGAACTGTAGCCCTTGCAGACCTCGCAAGTGTTTCTGGCGCGAACGGGAACACCTTGTGGCTCATGACTAATGGCAGATTGTATGGTAGTGGAACAAACTCCAACGGATGCTTGGGTGCAAACAACACCAACATCTTCTCAACACCACGTTCTATAAGTGCTTCTTGCCTGAGAGCTTTCAGCCTAAACGCTTGCGTTACTTATTTAAATAACGTAGGGACTGCTCGTGTCTGCGGGATGACATATAGCATCAACGGAACAACAACCACCCAGACACAAAGTTTTATAGATGTGGCTGTTGCTCCCACCACAAATGTAGATACAGGGATCACAGCCCCTGTTTATGTGAAAGAGTGGATGTCGAACGAGTCCAACAGCATTGCCATCGGTTCTTATGCAGCAGATGATAACGACAATTACCTGTTTTGTAGGAATATTGTACCTGGGTTTACAACATCTACATATGTGAAGGTAAGTGATTTTGGTCCTTTCACTGATTTTCGTGTTATAGATGGTGGTCAGTCAAGATTCTTCATCGCTGATAATGTGTTGTATGGTATCGGAGATGTGCCTAGAAACCTTGGTCTTGGAACTACTGATTCTACGCAAGTGTCCACCCCAACACCTGTTCCAGTTCCTACAGGGAAAGATTGGGACCTGAGTAAGCTTACTTATATTGCAGATATGAAGGGAAACACCCTTACAAGTGGTGGTACTTTCGGTCACTGGATGGTGTACGACAACAACCTTTACTATACAGGGTTTAGTTACGGATTCTTTAATTCAAACGACACCTCTTATGTGTTTGTAAACGTGCCGGAGTCATCGTTTGAAGGAACGACAGCAGATGCTATCACCACGGGTTCAATTCCATATGCAATAAAAGGGTCGAAGGGTCAGATGACTTGGACGGTAGAGCCTGCTAATGCGGAGATTTACGATATTTCGTTCACATCAAGTGCTCCTAATATCGCAACTGTCGATTCGAACGGGATCATGACATTCCTTGAAGAGGGTAGCTTTGACATCACAATGACTGCTAAAACAGGGTCGGGCGATGATGCAAAGACACTCACTGACACCTCTGGTGGTTATGTTTCCATCTTCTCGGTGACCACAGATTCCGTACCTGCAAAACAGGTCGGTGATGTTTTCGTGTTCATGGATAAGAACAGTCCAGACTACACACCCGGTCCAAACATTATCGGTATGGAGTTCTCTCCTGCGAATGTTGATACCAGCTTTATAGATGGGGAATTCACTACGACAGATCCAAGTGTTGTAGAGGTTAGTCCTGACGGATACCTGACCTGTATCGCATCAGGTGATTGCCGTTGTGGTGTGCGCCTTATCTACAGAGAGGGTCAAGTTGAAGCATTCGATGATTCATATGTCTCGGTTCTTGAACCTACAGCAACAATCCCACCAGACGGTGGTGGGATCATCACCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)