Protein

View in Explore
Genbank accession
AGG54343.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,71
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDSIDNRGNSSLRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSILLYPSEYIVDNRPGEVLYTNIPPLDANSNMDVTSPNNVLYKFNSVEGGMIVPRGCSLVGMDLRRTKIIPKYVPYPTTFPAKGINTEEQVPSKTAIFRVTGGCYFWQFSLFDGDPTGVYYKPDDSETIPPSYSHHKLTGFEFADGNNTLSQLINDLGTVENSAEITGSSIPNLLERTDLDIYYQKVSRGFATIPDTSGDPATDQIQARVEENRIVGPISDEFRVLQITRNGNTATAITVDEQNNPKNHGFSVGVNVNISGVTGSTGPQTDLDAQLYNGSFAVTSASGNVFTYQLAEEPSGNAVGSNIVVKVEIDTVDSASPYMFNLSLRSVWGMNGMHADGAKATGFKSMVVAQYTGLSLQKDDRAFVKYNATTGNYDEGGPGAHLDGFAEYKKGWRHTHVMCSNDSFIQVVSVFAVGYADHFAGFQGADMSITNSNSNFGNTALRSKGFKRAAFTKDKAGTLTHIIPPKSLADVDEISVNWTNIDIKRTLTINPALAGQGGVLGSRLYLYGYTNETAPPPNKVQGYVIGARQDGLGANAVPDKINCLLIPSPGSAPEIKTAEINPFGPDVSGTSAGGDGSPIQFDSSTYTIGGVANTVGGWYISVNATDNQIYQTLVNNSSSGNPPGTYANLNFTPTTFIKRVPDARNLTDRTYRVRYVIPKDQNPPLPRSPIAGFVLQPNNTDNTDYKLSKCYYIYDIQEVQKFERGISDGIFYLTLLCGSISPTTSNFDDMAFSQNVNEVYPAFDRDNPNADPAASVSVADNETIGLVYGTDGASPVPARDDQRSITKEAILFLLNDTGWVAGSSPGWNSINNTLSGIDLTARLGDEETRKIPILEDSANNDALVPINVELRRHSILRSGNHTFEYTGFGPGNYSTAFPQTQVETLSDEQIRLSQSLKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITSEDIAQLNVLGEENTTIETFSEVVITDKLTVIGGASNNLESIFSGPATFQGTITSQKDILAKKLTYNNQDGTVLKSTLLAPELKTGTPPVGQGTPDLSAVLNYNAPSDGDIVYNIDWEPGKNLGWMYYESVWYKFGLTNTDVFQFGEYDSSYPQHIGLGRAPSSTYRLEVEGSQRITGDLRVDGRGGVAPDKYITRRTQGDGSTLNYQITSYAGVVHNSKSVIVTINGVLQHPDVNYTVDSNGTNVVFASGDAPTSNDFVEIRELPI
Physico‐chemical
properties
protein length:1270 AA
molecular weight: 137791,13440 Da
isoelectric point:4,77575
aromaticity:0,09370
hydropathy:-0,33488

Domains

Domains [InterPro]
DC_0066
STR
1–1268
DC_0066
IPR023366
STR
296–379
IPR023366
AGG54343.1
1 1270
Architecture
STR
STR 1-1268 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGG54343.1
1 1270
Domain Start End Length (AA) Confidence
N-terminal 1 91 91 0,9558
Central domain 92 301 211 0,9345
C-terminal 302 1270 968 0,1028
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-91
Central
92-301
C-terminal
302-1270

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6b
[NCBI] 		682651 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54343.1 [NCBI]
Genbank nucleotide accession
HQ316603.1 [NCBI]
CDS location
range 67156 -> 70968
strand -
CDS
ATGGCACTAACTCGTCTTAAGAATATTATCACGTCCCGTACGGGTCGTATCATTTACGTCAACCCTGACGACTTTGATGCCAGTGATAGTATTGACAACAGAGGTAACTCCTCACTCAGACCGTTCAAATCTCTGCAACGTGCATTCCTTGAGGTGGCACGTTTCTCATATCGTGTTGGATTAAGTAATGACGAGTTTGATGCCTTCAGTATTCTCTTATATCCTTCAGAGTATATTGTTGACAACAGACCTGGCGAAGTATTATATACAAATATTCCCCCATTAGACGCTAACTCCAACATGGATGTTACGTCTCCTAACAACGTATTATATAAATTTAATTCAGTTGAAGGTGGTATGATCGTACCTAGAGGTTGTTCTCTAGTTGGTATGGATCTTAGAAGGACTAAGATTATTCCTAAGTACGTTCCTTATCCTACAACATTCCCTGCTAAAGGTATCAACACCGAGGAACAGGTTCCTTCAAAAACTGCTATCTTCCGTGTTACAGGTGGTTGCTATTTCTGGCAGTTCAGTTTATTTGATGGTGATCCTACAGGTGTATATTACAAACCTGATGATTCAGAGACAATCCCACCATCTTATTCACACCACAAACTTACAGGTTTTGAATTCGCAGACGGAAACAATACATTAAGTCAATTAATTAACGACTTGGGAACTGTAGAAAACTCTGCAGAGATTACAGGTTCATCTATCCCGAACCTATTAGAAAGAACTGACCTAGATATCTATTATCAGAAAGTATCTCGTGGTTTTGCTACCATCCCTGATACATCTGGAGACCCTGCAACTGACCAAATTCAGGCAAGGGTAGAAGAAAACAGAATCGTTGGACCTATCTCAGATGAATTTAGAGTTCTCCAAATTACACGCAATGGCAACACTGCTACAGCAATTACAGTTGACGAGCAGAATAACCCTAAGAACCACGGATTTTCTGTTGGTGTTAACGTTAACATTTCTGGTGTCACTGGATCTACTGGACCCCAAACAGACTTAGATGCTCAATTATATAATGGTTCGTTCGCTGTTACTTCAGCATCTGGTAACGTATTCACTTATCAGTTAGCAGAAGAACCATCTGGTAATGCTGTTGGTTCTAACATTGTTGTTAAAGTTGAGATTGATACTGTTGACTCAGCATCACCATATATGTTTAACCTTTCACTAAGATCAGTGTGGGGTATGAACGGTATGCATGCTGATGGTGCCAAGGCAACTGGATTTAAGTCAATGGTTGTTGCCCAGTATACGGGACTATCATTGCAGAAAGACGACAGAGCATTTGTTAAATATAATGCTACGACAGGAAACTATGATGAGGGAGGACCTGGTGCTCACTTAGATGGTTTTGCTGAATATAAAAAAGGATGGCGACATACTCACGTTATGTGCAGTAATGACTCATTCATTCAGGTCGTTTCGGTGTTCGCTGTGGGATACGCAGATCACTTTGCTGGATTCCAAGGTGCTGACATGTCTATTACTAACAGTAATAGTAACTTTGGTAATACTGCATTGAGATCAAAAGGATTTAAGAGAGCAGCATTCACTAAAGATAAAGCAGGCACACTTACACATATCATTCCACCTAAGTCACTTGCTGATGTTGATGAGATCTCAGTCAACTGGACTAACATTGATATTAAGAGAACACTTACAATTAACCCTGCACTTGCTGGTCAGGGTGGTGTACTTGGTTCTAGATTATATCTCTATGGATATACTAACGAGACAGCACCGCCACCGAACAAAGTTCAGGGTTATGTGATTGGTGCTAGACAGGATGGTTTAGGTGCTAACGCAGTACCTGACAAGATTAATTGTTTACTTATTCCTTCACCAGGTTCTGCACCTGAGATTAAAACTGCAGAGATCAACCCATTTGGACCTGATGTATCTGGTACAAGTGCAGGTGGTGATGGATCTCCTATTCAATTTGATAGTAGCACATATACTATCGGTGGTGTCGCTAACACAGTCGGTGGTTGGTATATATCTGTTAATGCTACTGACAATCAAATCTATCAAACTCTAGTTAATAATAGTAGTTCTGGTAACCCACCAGGCACATATGCTAACCTGAACTTTACTCCTACAACGTTCATTAAGCGTGTACCTGACGCTAGAAACCTGACTGACAGAACTTATCGTGTTCGTTATGTCATTCCTAAAGATCAGAACCCACCTCTACCTAGATCACCTATTGCAGGTTTCGTATTACAACCGAACAATACTGACAACACAGACTATAAGTTATCTAAGTGTTATTATATCTACGACATTCAAGAAGTCCAGAAGTTTGAGCGTGGTATAAGTGATGGTATATTCTATCTCACATTATTGTGTGGTAGTATCTCACCAACAACATCAAACTTTGACGACATGGCATTCTCTCAGAATGTTAATGAAGTTTATCCTGCATTTGACAGAGACAATCCAAACGCAGACCCTGCAGCATCTGTATCTGTTGCTGACAATGAAACAATCGGTCTAGTATATGGTACTGACGGTGCATCACCTGTACCTGCAAGGGATGATCAAAGAAGTATTACTAAAGAAGCAATTCTATTCTTATTAAATGATACTGGATGGGTCGCTGGATCCTCACCAGGTTGGAATAGTATTAACAATACTCTATCTGGTATTGATTTGACTGCTAGATTAGGTGATGAAGAAACTAGAAAGATTCCTATTCTAGAAGATAGTGCAAACAATGATGCACTGGTTCCTATTAACGTAGAACTGAGACGACACTCCATTCTTAGATCTGGTAACCATACATTTGAATACACTGGTTTCGGACCAGGTAACTATTCAACTGCATTCCCACAGACACAGGTTGAAACTCTATCTGATGAACAGATTAGATTATCACAGTCTCTCAAAGAAGAGGCAGGCGTTGCATTCTACTCTGGACTTAACTCTAACGGTGACCTATTTATTGGTAACCAAGTTATCAACCCTGTTACTGGTCAGATCACATCTGAAGATATTGCACAGTTAAATGTATTAGGTGAAGAGAATACTACCATTGAAACATTCTCTGAAGTTGTTATTACTGACAAACTAACTGTTATCGGTGGTGCAAGTAACAACTTAGAATCTATCTTCTCAGGTCCTGCTACATTCCAAGGCACTATTACTTCTCAGAAAGATATTCTTGCTAAGAAGTTAACATATAACAACCAAGATGGTACGGTTCTTAAATCTACTCTCTTAGCACCTGAATTGAAAACTGGTACTCCCCCAGTTGGTCAAGGTACACCTGATTTAAGTGCAGTATTGAACTACAATGCTCCTAGTGATGGTGACATTGTATATAATATTGACTGGGAACCTGGTAAAAACCTAGGTTGGATGTACTATGAATCTGTATGGTACAAGTTTGGACTAACTAACACCGATGTATTCCAATTTGGAGAGTATGATTCATCCTACCCTCAACATATTGGTTTAGGTAGAGCGCCATCGTCCACATATAGATTAGAAGTAGAGGGATCGCAGCGTATTACTGGTGACCTTCGTGTTGATGGTCGTGGTGGTGTTGCTCCTGATAAATATATTACTAGACGTACTCAGGGTGATGGTTCTACCCTGAACTATCAGATTACATCATACGCTGGTGTTGTACACAATTCTAAGTCGGTGATTGTTACTATCAATGGTGTATTACAGCATCCTGATGTTAACTATACTGTTGATTCAAACGGTACTAACGTAGTGTTCGCATCTGGCGATGCTCCTACATCAAATGATTTTGTTGAAATTAGAGAACTACCTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c3a492bf0e50c287127b25241ffe0dc4a666df17db81efc0146362dfc9d88e44
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3454
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6b Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank