Protein

View in Explore
Genbank accession
AGG54343.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,71
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
Protein sequence
MALTRLKNIITSRTGRIIYVNPDDFDASDSIDNRGNSSLRPFKSLQRAFLEVARFSYRVGLSNDEFDAFSILLYPSEYIVDNRPGEVLYTNIPPLDANSNMDVTSPNNVLYKFNSVEGGMIVPRGCSLVGMDLRRTKIIPKYVPYPTTFPAKGINTEEQVPSKTAIFRVTGGCYFWQFSLFDGDPTGVYYKPDDSETIPPSYSHHKLTGFEFADGNNTLSQLINDLGTVENSAEITGSSIPNLLERTDLDIYYQKVSRGFATIPDTSGDPATDQIQARVEENRIVGPISDEFRVLQITRNGNTATAITVDEQNNPKNHGFSVGVNVNISGVTGSTGPQTDLDAQLYNGSFAVTSASGNVFTYQLAEEPSGNAVGSNIVVKVEIDTVDSASPYMFNLSLRSVWGMNGMHADGAKATGFKSMVVAQYTGLSLQKDDRAFVKYNATTGNYDEGGPGAHLDGFAEYKKGWRHTHVMCSNDSFIQVVSVFAVGYADHFAGFQGADMSITNSNSNFGNTALRSKGFKRAAFTKDKAGTLTHIIPPKSLADVDEISVNWTNIDIKRTLTINPALAGQGGVLGSRLYLYGYTNETAPPPNKVQGYVIGARQDGLGANAVPDKINCLLIPSPGSAPEIKTAEINPFGPDVSGTSAGGDGSPIQFDSSTYTIGGVANTVGGWYISVNATDNQIYQTLVNNSSSGNPPGTYANLNFTPTTFIKRVPDARNLTDRTYRVRYVIPKDQNPPLPRSPIAGFVLQPNNTDNTDYKLSKCYYIYDIQEVQKFERGISDGIFYLTLLCGSISPTTSNFDDMAFSQNVNEVYPAFDRDNPNADPAASVSVADNETIGLVYGTDGASPVPARDDQRSITKEAILFLLNDTGWVAGSSPGWNSINNTLSGIDLTARLGDEETRKIPILEDSANNDALVPINVELRRHSILRSGNHTFEYTGFGPGNYSTAFPQTQVETLSDEQIRLSQSLKEEAGVAFYSGLNSNGDLFIGNQVINPVTGQITSEDIAQLNVLGEENTTIETFSEVVITDKLTVIGGASNNLESIFSGPATFQGTITSQKDILAKKLTYNNQDGTVLKSTLLAPELKTGTPPVGQGTPDLSAVLNYNAPSDGDIVYNIDWEPGKNLGWMYYESVWYKFGLTNTDVFQFGEYDSSYPQHIGLGRAPSSTYRLEVEGSQRITGDLRVDGRGGVAPDKYITRRTQGDGSTLNYQITSYAGVVHNSKSVIVTINGVLQHPDVNYTVDSNGTNVVFASGDAPTSNDFVEIRELPI
Physico‐chemical
properties
protein length:1270 AA
molecular weight: 137791,13440 Da
isoelectric point:4,77575
aromaticity:0,09370
hydropathy:-0,33488

Domains

Domains [InterPro]
IPR023366
296–379
IPR023366
AGG54343.1
1 1270
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage S-SSM6b
[NCBI] 		682651 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGG54343.1 [NCBI]
Genbank nucleotide accession
HQ316603 [NCBI]
CDS location
range 67156 -> 70968
strand -
CDS
ATGGCACTAACTCGTCTTAAGAATATTATCACGTCCCGTACGGGTCGTATCATTTACGTCAACCCTGACGACTTTGATGCCAGTGATAGTATTGACAACAGAGGTAACTCCTCACTCAGACCGTTCAAATCTCTGCAACGTGCATTCCTTGAGGTGGCACGTTTCTCATATCGTGTTGGATTAAGTAATGACGAGTTTGATGCCTTCAGTATTCTCTTATATCCTTCAGAGTATATTGTTGACAACAGACCTGGCGAAGTATTATATACAAATATTCCCCCATTAGACGCTAACTCCAACATGGATGTTACGTCTCCTAACAACGTATTATATAAATTTAATTCAGTTGAAGGTGGTATGATCGTACCTAGAGGTTGTTCTCTAGTTGGTATGGATCTTAGAAGGACTAAGATTATTCCTAAGTACGTTCCTTATCCTACAACATTCCCTGCTAAAGGTATCAACACCGAGGAACAGGTTCCTTCAAAAACTGCTATCTTCCGTGTTACAGGTGGTTGCTATTTCTGGCAGTTCAGTTTATTTGATGGTGATCCTACAGGTGTATATTACAAACCTGATGATTCAGAGACAATCCCACCATCTTATTCACACCACAAACTTACAGGTTTTGAATTCGCAGACGGAAACAATACATTAAGTCAATTAATTAACGACTTGGGAACTGTAGAAAACTCTGCAGAGATTACAGGTTCATCTATCCCGAACCTATTAGAAAGAACTGACCTAGATATCTATTATCAGAAAGTATCTCGTGGTTTTGCTACCATCCCTGATACATCTGGAGACCCTGCAACTGACCAAATTCAGGCAAGGGTAGAAGAAAACAGAATCGTTGGACCTATCTCAGATGAATTTAGAGTTCTCCAAATTACACGCAATGGCAACACTGCTACAGCAATTACAGTTGACGAGCAGAATAACCCTAAGAACCACGGATTTTCTGTTGGTGTTAACGTTAACATTTCTGGTGTCACTGGATCTACTGGACCCCAAACAGACTTAGATGCTCAATTATATAATGGTTCGTTCGCTGTTACTTCAGCATCTGGTAACGTATTCACTTATCAGTTAGCAGAAGAACCATCTGGTAATGCTGTTGGTTCTAACATTGTTGTTAAAGTTGAGATTGATACTGTTGACTCAGCATCACCATATATGTTTAACCTTTCACTAAGATCAGTGTGGGGTATGAACGGTATGCATGCTGATGGTGCCAAGGCAACTGGATTTAAGTCAATGGTTGTTGCCCAGTATACGGGACTATCATTGCAGAAAGACGACAGAGCATTTGTTAAATATAATGCTACGACAGGAAACTATGATGAGGGAGGACCTGGTGCTCACTTAGATGGTTTTGCTGAATATAAAAAAGGATGGCGACATACTCACGTTATGTGCAGTAATGACTCATTCATTCAGGTCGTTTCGGTGTTCGCTGTGGGATACGCAGATCACTTTGCTGGATTCCAAGGTGCTGACATGTCTATTACTAACAGTAATAGTAACTTTGGTAATACTGCATTGAGATCAAAAGGATTTAAGAGAGCAGCATTCACTAAAGATAAAGCAGGCACACTTACACATATCATTCCACCTAAGTCACTTGCTGATGTTGATGAGATCTCAGTCAACTGGACTAACATTGATATTAAGAGAACACTTACAATTAACCCTGCACTTGCTGGTCAGGGTGGTGTACTTGGTTCTAGATTATATCTCTATGGATATACTAACGAGACAGCACCGCCACCGAACAAAGTTCAGGGTTATGTGATTGGTGCTAGACAGGATGGTTTAGGTGCTAACGCAGTACCTGACAAGATTAATTGTTTACTTATTCCTTCACCAGGTTCTGCACCTGAGATTAAAACTGCAGAGATCAACCCATTTGGACCTGATGTATCTGGTACAAGTGCAGGTGGTGATGGATCTCCTATTCAATTTGATAGTAGCACATATACTATCGGTGGTGTCGCTAACACAGTCGGTGGTTGGTATATATCTGTTAATGCTACTGACAATCAAATCTATCAAACTCTAGTTAATAATAGTAGTTCTGGTAACCCACCAGGCACATATGCTAACCTGAACTTTACTCCTACAACGTTCATTAAGCGTGTACCTGACGCTAGAAACCTGACTGACAGAACTTATCGTGTTCGTTATGTCATTCCTAAAGATCAGAACCCACCTCTACCTAGATCACCTATTGCAGGTTTCGTATTACAACCGAACAATACTGACAACACAGACTATAAGTTATCTAAGTGTTATTATATCTACGACATTCAAGAAGTCCAGAAGTTTGAGCGTGGTATAAGTGATGGTATATTCTATCTCACATTATTGTGTGGTAGTATCTCACCAACAACATCAAACTTTGACGACATGGCATTCTCTCAGAATGTTAATGAAGTTTATCCTGCATTTGACAGAGACAATCCAAACGCAGACCCTGCAGCATCTGTATCTGTTGCTGACAATGAAACAATCGGTCTAGTATATGGTACTGACGGTGCATCACCTGTACCTGCAAGGGATGATCAAAGAAGTATTACTAAAGAAGCAATTCTATTCTTATTAAATGATACTGGATGGGTCGCTGGATCCTCACCAGGTTGGAATAGTATTAACAATACTCTATCTGGTATTGATTTGACTGCTAGATTAGGTGATGAAGAAACTAGAAAGATTCCTATTCTAGAAGATAGTGCAAACAATGATGCACTGGTTCCTATTAACGTAGAACTGAGACGACACTCCATTCTTAGATCTGGTAACCATACATTTGAATACACTGGTTTCGGACCAGGTAACTATTCAACTGCATTCCCACAGACACAGGTTGAAACTCTATCTGATGAACAGATTAGATTATCACAGTCTCTCAAAGAAGAGGCAGGCGTTGCATTCTACTCTGGACTTAACTCTAACGGTGACCTATTTATTGGTAACCAAGTTATCAACCCTGTTACTGGTCAGATCACATCTGAAGATATTGCACAGTTAAATGTATTAGGTGAAGAGAATACTACCATTGAAACATTCTCTGAAGTTGTTATTACTGACAAACTAACTGTTATCGGTGGTGCAAGTAACAACTTAGAATCTATCTTCTCAGGTCCTGCTACATTCCAAGGCACTATTACTTCTCAGAAAGATATTCTTGCTAAGAAGTTAACATATAACAACCAAGATGGTACGGTTCTTAAATCTACTCTCTTAGCACCTGAATTGAAAACTGGTACTCCCCCAGTTGGTCAAGGTACACCTGATTTAAGTGCAGTATTGAACTACAATGCTCCTAGTGATGGTGACATTGTATATAATATTGACTGGGAACCTGGTAAAAACCTAGGTTGGATGTACTATGAATCTGTATGGTACAAGTTTGGACTAACTAACACCGATGTATTCCAATTTGGAGAGTATGATTCATCCTACCCTCAACATATTGGTTTAGGTAGAGCGCCATCGTCCACATATAGATTAGAAGTAGAGGGATCGCAGCGTATTACTGGTGACCTTCGTGTTGATGGTCGTGGTGGTGTTGCTCCTGATAAATATATTACTAGACGTACTCAGGGTGATGGTTCTACCCTGAACTATCAGATTACATCATACGCTGGTGTTGTACACAATTCTAAGTCGGTGATTGTTACTATCAATGGTGTATTACAGCATCCTGATGTTAACTATACTGTTGATTCAAACGGTACTAACGTAGTGTTCGCATCTGGCGATGCTCCTACATCAAATGATTTTGTTGAAATTAGAGAACTACCTATCTAA

Tertiary structure

PDB ID
c3a492bf0e50c287127b25241ffe0dc4a666df17db81efc0146362dfc9d88e44
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3454
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage S-SSM6b Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank