Protein

View in Explore
Genbank accession
ARK07424.1 [GenBank]
Protein name
F5/8 type C domain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,75
TF
Evidence RBPdetect2
Probability 0,71
Seq2Symm
C1 confidence 0,964 truncated
C1 0,964
C3 0,041
I 0,006
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MPNTPILAIPQLTENQAGKEIVINDAILAIESALGKGLSVSFATASAVTLSVAQITRNFLIKVEGATAACTLTAPDNVAGVATARVFAISNLSNWDCTVKSSSTAADDQVVVPSKQTVMVLIDGTAARKIAASVPNGELRDMTDVDWTTIGNGKVMVWNSATNKFTFVTPLTEATGVPSGGSNGQVLTKVSGATAWANLPESTVAEVPSGGAVNQVLTKTSEEDYAWMDLPPGVELPDFLVLTDTPENYEGAAGKLVVVKADETGLEFVTMPVSLPAGGTEGQVLQRDAAGAAVWGNAPESLPEGGEEGQVLTRAANGDAVWATGGDGGSADYPAFTDNAGKILAVNAAEDGVEWITAPEGGGVVGGSSGSVFAAGMVPYTGPLSGLAGAAAVGQAFTAYADVGMTGAVVAVDSDAGARTYTLFVAEATVTTDSTGQMLPVSAGCVVLGAVLATKNFGTASANTQWQHVFFDSAVEIEEGKTYCIGVIRVEGTTTDPTYVGYSSSEVKTYGFPSKVYSRVAYFTTRSLAGASNAGVDGGTASALCISPFGESVGTGGTGVVSHELPVTNAGGELGTMDGWTVTPAGSMVITSNYGGGSPRSGTYFFAAAAGASSAMSQVIDLSDYANDIDARTVEMDASVYTQTTYTSSERSEFLVEVLGAAGNVLAAYRDQISGIGTMVQFRWNRLSAREWLPAGARSLRVTATSVRLDGTNNDNSFDDFSVVLRVYGSGRAGGSADYPAFAKNAGKVLAVNDAEDGVEWIEPTVAGRVEPLRRTSLFSWDFTKSGELVAGNYDIDVSEYDEIDIIFDRVTKAVSASFVVRFSTDGGVTFDESASYYSDVGNTGTWAYADAALYSSGQSAASRVFMWNVRSLRSSNTGKPIFGNRSALYANHNPVTHVRIVAVSNYTGGAIEVLGVQAAVDPKTITSTVGKHRYWMLKDWTHTQGQSAADRVVGGSALELRATVGGSALPVSAISATDTLSGYPVSNLIDATASTFWCAQYGSNPYIVIDLGADSAVREIAWSGRPDSYYTQSPRGFNLYFSDDGIEWSLAGPVLLATQTAAGQTSTGKVPSKVRVATPVGSSTRAVVETATNLLAADAGNYLRFTAVTAKTLTVQLESVEPQADNSEWHIRNAASANLTVVGASGVTINAPYNGSLIIPPQGTATLKRAAANTYDLMGQTV
Physico‐chemical
properties
protein length:1183 AA
molecular weight: 122610,83870 Da
isoelectric point:4,56175
aromaticity:0,08115
hydropathy:0,03280

Domains

View on InterPro
Domain architecture
ARK07424.1
1 1183 aa
RBD 954–967 · STR 968–1132 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
ARK07424.1
1 1183 aa
Domain Start End Length (AA) Confidence
N-terminal 1 375 375 0,8607
Central domain 376 574 200 0,4286
C-terminal 575 1183 608 0,7149
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Sphingobium phage Lacusarx [NCBI] · taxon 1980139
Uroviricota Caudoviricetes Lacusarxvirus Lacusarxvirus lacusarx
Host
Sphingobium sp. IP1 [NCBI] · taxon 2021637
Pseudomonadota Alphaproteobacteria Sphingomonadales Sphingobiaceae Sphingobium Sphingobium sp. IP1

Coding sequence (CDS)

Genbank protein accession
ARK07424.1 [NCBI]
Genbank nucleotide accession
KY629563 [NCBI]
CDS location
range 23924 -> 27475
strand +
CDS
ATGCCCAACACTCCCATCCTCGCCATCCCCCAGCTCACTGAAAATCAGGCTGGTAAGGAAATCGTCATCAATGACGCCATCCTCGCGATCGAAAGCGCGTTGGGTAAGGGCCTGTCCGTCAGCTTCGCCACGGCAAGCGCGGTCACGCTTTCGGTCGCTCAGATCACCCGCAACTTCCTGATCAAGGTGGAGGGCGCCACGGCGGCCTGCACCCTGACGGCACCGGACAATGTGGCAGGTGTGGCGACCGCGCGCGTCTTTGCGATCTCGAACCTCAGCAATTGGGACTGCACGGTCAAGTCGTCCTCGACCGCCGCAGACGATCAGGTTGTCGTGCCCTCGAAGCAGACGGTGATGGTCCTGATCGACGGCACGGCGGCGCGCAAGATCGCGGCGTCCGTTCCGAATGGCGAGCTGCGGGACATGACCGATGTCGATTGGACCACGATCGGCAATGGCAAGGTCATGGTCTGGAACTCGGCCACCAACAAGTTCACCTTCGTCACCCCGCTGACCGAAGCGACCGGCGTCCCGTCCGGAGGCTCGAACGGTCAGGTGCTGACCAAGGTCAGCGGCGCGACCGCGTGGGCGAATCTACCCGAGTCCACGGTGGCGGAGGTGCCGAGCGGAGGTGCCGTCAATCAGGTTCTCACCAAGACCTCGGAGGAGGACTATGCGTGGATGGACCTCCCGCCCGGCGTCGAACTTCCCGACTTCCTTGTCCTGACCGATACCCCGGAGAACTATGAGGGCGCCGCCGGGAAGCTCGTGGTCGTCAAGGCCGACGAGACCGGTCTGGAGTTTGTCACCATGCCGGTATCGCTCCCGGCGGGCGGCACCGAGGGGCAGGTGCTGCAGCGGGACGCTGCTGGTGCCGCCGTCTGGGGAAATGCGCCGGAAAGCCTCCCGGAAGGCGGTGAAGAGGGGCAGGTCCTGACGCGCGCCGCAAATGGCGATGCCGTATGGGCCACCGGCGGAGACGGCGGGTCCGCAGACTACCCCGCGTTCACGGACAACGCCGGTAAGATTCTGGCCGTCAACGCGGCTGAGGATGGCGTAGAGTGGATTACCGCACCAGAGGGGGGCGGGGTTGTCGGCGGTTCCAGTGGGAGCGTGTTCGCGGCCGGGATGGTCCCCTACACTGGACCCCTGTCGGGCCTTGCGGGGGCGGCGGCGGTGGGGCAGGCGTTCACGGCCTACGCCGATGTCGGTATGACGGGGGCGGTCGTCGCGGTGGACTCCGATGCCGGGGCGCGGACCTACACGCTGTTCGTCGCCGAGGCCACCGTAACGACGGACAGCACCGGCCAGATGCTGCCCGTTTCTGCTGGGTGTGTCGTGCTGGGGGCCGTGCTGGCCACCAAGAACTTCGGCACCGCGTCCGCGAACACGCAGTGGCAGCATGTCTTTTTTGATAGTGCAGTGGAGATCGAAGAAGGTAAGACCTACTGCATCGGCGTCATCCGGGTGGAGGGGACGACCACCGACCCGACCTACGTGGGTTACTCGTCGTCGGAGGTGAAGACTTACGGCTTCCCGTCCAAGGTTTACAGTCGTGTAGCTTACTTCACGACGCGGAGTCTGGCGGGCGCGTCCAACGCTGGTGTGGATGGTGGGACGGCATCCGCCCTCTGTATCAGCCCGTTCGGCGAGTCGGTCGGCACCGGCGGGACAGGGGTTGTGAGCCACGAACTACCTGTGACGAACGCGGGCGGCGAGCTTGGCACCATGGATGGGTGGACCGTGACCCCTGCAGGTAGCATGGTCATCACCTCGAACTACGGCGGCGGTTCGCCTCGAAGCGGAACCTACTTCTTCGCCGCCGCCGCCGGTGCCAGTTCCGCCATGTCTCAGGTGATCGACCTGTCGGATTACGCGAACGACATCGACGCGCGCACCGTAGAGATGGACGCTTCGGTATACACGCAGACTACTTACACCTCCTCCGAGCGGTCGGAGTTTCTGGTTGAGGTTCTGGGCGCGGCTGGTAATGTGCTCGCAGCGTATCGGGACCAGATCAGCGGTATCGGGACCATGGTCCAGTTCCGATGGAACCGGCTCAGCGCTCGCGAATGGCTCCCTGCGGGCGCGCGTTCGCTCCGGGTGACGGCCACTTCCGTTCGCCTCGACGGAACCAACAACGACAACAGCTTCGACGATTTTAGCGTTGTGCTCCGGGTTTACGGTTCCGGCCGTGCGGGAGGCTCCGCTGACTACCCTGCTTTCGCGAAAAACGCCGGCAAGGTGTTGGCGGTCAACGACGCAGAGGACGGTGTGGAGTGGATCGAACCCACTGTAGCTGGCCGCGTGGAGCCTCTGCGCCGGACTTCCCTGTTCTCGTGGGACTTCACGAAAAGCGGAGAGCTTGTCGCTGGTAACTACGACATCGACGTGTCCGAATATGACGAGATCGACATCATCTTCGATCGCGTGACTAAGGCTGTGTCAGCCTCTTTCGTGGTCCGTTTCAGCACGGATGGAGGGGTGACGTTTGACGAAAGCGCATCCTACTATTCTGATGTCGGCAACACAGGGACTTGGGCCTACGCGGACGCCGCGCTGTATTCCAGCGGCCAGTCTGCGGCGTCTCGGGTGTTCATGTGGAACGTCCGCTCCTTGCGCTCGTCGAACACGGGCAAGCCGATTTTCGGCAATCGCAGCGCACTGTATGCGAACCACAATCCCGTAACTCATGTCCGAATTGTTGCGGTATCGAACTACACGGGCGGCGCGATTGAAGTGCTTGGCGTGCAAGCTGCTGTCGATCCGAAGACTATCACTAGCACGGTCGGTAAGCACCGCTACTGGATGCTCAAGGATTGGACGCACACGCAGGGGCAGAGCGCCGCCGATCGCGTTGTCGGCGGCTCCGCGCTTGAACTGCGAGCCACGGTAGGTGGGTCAGCGCTACCCGTGTCAGCTATCTCGGCAACGGACACGCTCTCGGGCTACCCTGTGTCCAACCTGATTGATGCAACTGCCAGCACCTTCTGGTGCGCGCAGTATGGGTCCAATCCGTATATTGTGATTGACCTCGGCGCTGATAGTGCAGTGCGTGAGATCGCTTGGTCCGGACGCCCCGACAGCTATTACACACAGTCGCCGCGAGGGTTCAACCTTTACTTCTCAGATGACGGCATCGAGTGGTCTCTGGCCGGTCCTGTCCTCCTCGCAACCCAGACGGCTGCGGGCCAGACATCCACGGGCAAGGTGCCGAGCAAGGTGCGGGTGGCTACCCCTGTCGGAAGCTCGACTCGTGCGGTGGTCGAGACGGCCACAAACCTCCTCGCTGCCGACGCTGGGAACTATCTTCGCTTCACCGCCGTCACCGCTAAAACTCTGACGGTCCAGCTCGAAAGCGTCGAGCCACAGGCGGACAATTCCGAGTGGCATATCCGAAACGCGGCGTCGGCAAACCTGACCGTGGTAGGGGCGTCAGGTGTAACGATCAATGCACCCTACAACGGGTCTCTGATCATCCCGCCGCAAGGCACCGCCACACTCAAGCGCGCTGCCGCCAACACCTACGACCTCATGGGCCAGACCGTATGA

Genome Context

Tertiary structure

ARK07424.1
ESMFold2 structure
Source ESMFold2
pLDDT 72.7
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The first characterized phage against a member of the ecologically important #sphingomonads reveals high dissimilarity against all other known phages Nielsen,T.K., Carstens,A.B., Kot,W., Lametsch,R., Neve,H. and Hansen,L.H. 2017 29051555 GenBank