Protein

View in Explore
Genbank accession
ARK07424.1 [GenBank]
Protein name
F5/8 type C domain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MPNTPILAIPQLTENQAGKEIVINDAILAIESALGKGLSVSFATASAVTLSVAQITRNFLIKVEGATAACTLTAPDNVAGVATARVFAISNLSNWDCTVKSSSTAADDQVVVPSKQTVMVLIDGTAARKIAASVPNGELRDMTDVDWTTIGNGKVMVWNSATNKFTFVTPLTEATGVPSGGSNGQVLTKVSGATAWANLPESTVAEVPSGGAVNQVLTKTSEEDYAWMDLPPGVELPDFLVLTDTPENYEGAAGKLVVVKADETGLEFVTMPVSLPAGGTEGQVLQRDAAGAAVWGNAPESLPEGGEEGQVLTRAANGDAVWATGGDGGSADYPAFTDNAGKILAVNAAEDGVEWITAPEGGGVVGGSSGSVFAAGMVPYTGPLSGLAGAAAVGQAFTAYADVGMTGAVVAVDSDAGARTYTLFVAEATVTTDSTGQMLPVSAGCVVLGAVLATKNFGTASANTQWQHVFFDSAVEIEEGKTYCIGVIRVEGTTTDPTYVGYSSSEVKTYGFPSKVYSRVAYFTTRSLAGASNAGVDGGTASALCISPFGESVGTGGTGVVSHELPVTNAGGELGTMDGWTVTPAGSMVITSNYGGGSPRSGTYFFAAAAGASSAMSQVIDLSDYANDIDARTVEMDASVYTQTTYTSSERSEFLVEVLGAAGNVLAAYRDQISGIGTMVQFRWNRLSAREWLPAGARSLRVTATSVRLDGTNNDNSFDDFSVVLRVYGSGRAGGSADYPAFAKNAGKVLAVNDAEDGVEWIEPTVAGRVEPLRRTSLFSWDFTKSGELVAGNYDIDVSEYDEIDIIFDRVTKAVSASFVVRFSTDGGVTFDESASYYSDVGNTGTWAYADAALYSSGQSAASRVFMWNVRSLRSSNTGKPIFGNRSALYANHNPVTHVRIVAVSNYTGGAIEVLGVQAAVDPKTITSTVGKHRYWMLKDWTHTQGQSAADRVVGGSALELRATVGGSALPVSAISATDTLSGYPVSNLIDATASTFWCAQYGSNPYIVIDLGADSAVREIAWSGRPDSYYTQSPRGFNLYFSDDGIEWSLAGPVLLATQTAAGQTSTGKVPSKVRVATPVGSSTRAVVETATNLLAADAGNYLRFTAVTAKTLTVQLESVEPQADNSEWHIRNAASANLTVVGASGVTINAPYNGSLIIPPQGTATLKRAAANTYDLMGQTV
Physico‐chemical
properties
protein length:1183 AA
molecular weight: 122610,83870 Da
isoelectric point:4,56175
aromaticity:0,08115
hydropathy:0,03280

Domains

Domains [InterPro]
DC_1385
ATT
2–330
DC_1385 IPR000421
DC_1385
ATT
328–465
DC_1385 G3DSA:2.60.120.260
IPR000421
RBD
975–1053
IPR000421
IPR008979
STR
976–1055
IPR008979
DC_0220
STR
1014–1183
DC_0220
ARK07424.1
1 1183
Architecture
ATT
RBD
STR
ATT 2-465 | RBD 954-967 | STR 968-1183
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARK07424.1
1 1183
Domain Start End Length (AA) Confidence
N-terminal 1 375 375 0,8607
Central domain 376 574 200 0,4286
C-terminal 575 1183 608 0,7149
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-375
Central
376-574
C-terminal
575-1183

Taxonomy

  Name Taxonomy ID Lineage
Phage Sphingobium phage Lacusarx
[NCBI] 		1980139 Uroviricota > Caudoviricetes > Lacusarxvirus >
Host Sphingobium sp. IP1
[NCBI] 		2021637 Pseudomonadota > Alphaproteobacteria > Sphingomonadales > Sphingobiaceae > Sphingobium >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARK07424.1 [NCBI]
Genbank nucleotide accession
KY629563 [NCBI]
CDS location
range 23924 -> 27475
strand +
CDS
ATGCCCAACACTCCCATCCTCGCCATCCCCCAGCTCACTGAAAATCAGGCTGGTAAGGAAATCGTCATCAATGACGCCATCCTCGCGATCGAAAGCGCGTTGGGTAAGGGCCTGTCCGTCAGCTTCGCCACGGCAAGCGCGGTCACGCTTTCGGTCGCTCAGATCACCCGCAACTTCCTGATCAAGGTGGAGGGCGCCACGGCGGCCTGCACCCTGACGGCACCGGACAATGTGGCAGGTGTGGCGACCGCGCGCGTCTTTGCGATCTCGAACCTCAGCAATTGGGACTGCACGGTCAAGTCGTCCTCGACCGCCGCAGACGATCAGGTTGTCGTGCCCTCGAAGCAGACGGTGATGGTCCTGATCGACGGCACGGCGGCGCGCAAGATCGCGGCGTCCGTTCCGAATGGCGAGCTGCGGGACATGACCGATGTCGATTGGACCACGATCGGCAATGGCAAGGTCATGGTCTGGAACTCGGCCACCAACAAGTTCACCTTCGTCACCCCGCTGACCGAAGCGACCGGCGTCCCGTCCGGAGGCTCGAACGGTCAGGTGCTGACCAAGGTCAGCGGCGCGACCGCGTGGGCGAATCTACCCGAGTCCACGGTGGCGGAGGTGCCGAGCGGAGGTGCCGTCAATCAGGTTCTCACCAAGACCTCGGAGGAGGACTATGCGTGGATGGACCTCCCGCCCGGCGTCGAACTTCCCGACTTCCTTGTCCTGACCGATACCCCGGAGAACTATGAGGGCGCCGCCGGGAAGCTCGTGGTCGTCAAGGCCGACGAGACCGGTCTGGAGTTTGTCACCATGCCGGTATCGCTCCCGGCGGGCGGCACCGAGGGGCAGGTGCTGCAGCGGGACGCTGCTGGTGCCGCCGTCTGGGGAAATGCGCCGGAAAGCCTCCCGGAAGGCGGTGAAGAGGGGCAGGTCCTGACGCGCGCCGCAAATGGCGATGCCGTATGGGCCACCGGCGGAGACGGCGGGTCCGCAGACTACCCCGCGTTCACGGACAACGCCGGTAAGATTCTGGCCGTCAACGCGGCTGAGGATGGCGTAGAGTGGATTACCGCACCAGAGGGGGGCGGGGTTGTCGGCGGTTCCAGTGGGAGCGTGTTCGCGGCCGGGATGGTCCCCTACACTGGACCCCTGTCGGGCCTTGCGGGGGCGGCGGCGGTGGGGCAGGCGTTCACGGCCTACGCCGATGTCGGTATGACGGGGGCGGTCGTCGCGGTGGACTCCGATGCCGGGGCGCGGACCTACACGCTGTTCGTCGCCGAGGCCACCGTAACGACGGACAGCACCGGCCAGATGCTGCCCGTTTCTGCTGGGTGTGTCGTGCTGGGGGCCGTGCTGGCCACCAAGAACTTCGGCACCGCGTCCGCGAACACGCAGTGGCAGCATGTCTTTTTTGATAGTGCAGTGGAGATCGAAGAAGGTAAGACCTACTGCATCGGCGTCATCCGGGTGGAGGGGACGACCACCGACCCGACCTACGTGGGTTACTCGTCGTCGGAGGTGAAGACTTACGGCTTCCCGTCCAAGGTTTACAGTCGTGTAGCTTACTTCACGACGCGGAGTCTGGCGGGCGCGTCCAACGCTGGTGTGGATGGTGGGACGGCATCCGCCCTCTGTATCAGCCCGTTCGGCGAGTCGGTCGGCACCGGCGGGACAGGGGTTGTGAGCCACGAACTACCTGTGACGAACGCGGGCGGCGAGCTTGGCACCATGGATGGGTGGACCGTGACCCCTGCAGGTAGCATGGTCATCACCTCGAACTACGGCGGCGGTTCGCCTCGAAGCGGAACCTACTTCTTCGCCGCCGCCGCCGGTGCCAGTTCCGCCATGTCTCAGGTGATCGACCTGTCGGATTACGCGAACGACATCGACGCGCGCACCGTAGAGATGGACGCTTCGGTATACACGCAGACTACTTACACCTCCTCCGAGCGGTCGGAGTTTCTGGTTGAGGTTCTGGGCGCGGCTGGTAATGTGCTCGCAGCGTATCGGGACCAGATCAGCGGTATCGGGACCATGGTCCAGTTCCGATGGAACCGGCTCAGCGCTCGCGAATGGCTCCCTGCGGGCGCGCGTTCGCTCCGGGTGACGGCCACTTCCGTTCGCCTCGACGGAACCAACAACGACAACAGCTTCGACGATTTTAGCGTTGTGCTCCGGGTTTACGGTTCCGGCCGTGCGGGAGGCTCCGCTGACTACCCTGCTTTCGCGAAAAACGCCGGCAAGGTGTTGGCGGTCAACGACGCAGAGGACGGTGTGGAGTGGATCGAACCCACTGTAGCTGGCCGCGTGGAGCCTCTGCGCCGGACTTCCCTGTTCTCGTGGGACTTCACGAAAAGCGGAGAGCTTGTCGCTGGTAACTACGACATCGACGTGTCCGAATATGACGAGATCGACATCATCTTCGATCGCGTGACTAAGGCTGTGTCAGCCTCTTTCGTGGTCCGTTTCAGCACGGATGGAGGGGTGACGTTTGACGAAAGCGCATCCTACTATTCTGATGTCGGCAACACAGGGACTTGGGCCTACGCGGACGCCGCGCTGTATTCCAGCGGCCAGTCTGCGGCGTCTCGGGTGTTCATGTGGAACGTCCGCTCCTTGCGCTCGTCGAACACGGGCAAGCCGATTTTCGGCAATCGCAGCGCACTGTATGCGAACCACAATCCCGTAACTCATGTCCGAATTGTTGCGGTATCGAACTACACGGGCGGCGCGATTGAAGTGCTTGGCGTGCAAGCTGCTGTCGATCCGAAGACTATCACTAGCACGGTCGGTAAGCACCGCTACTGGATGCTCAAGGATTGGACGCACACGCAGGGGCAGAGCGCCGCCGATCGCGTTGTCGGCGGCTCCGCGCTTGAACTGCGAGCCACGGTAGGTGGGTCAGCGCTACCCGTGTCAGCTATCTCGGCAACGGACACGCTCTCGGGCTACCCTGTGTCCAACCTGATTGATGCAACTGCCAGCACCTTCTGGTGCGCGCAGTATGGGTCCAATCCGTATATTGTGATTGACCTCGGCGCTGATAGTGCAGTGCGTGAGATCGCTTGGTCCGGACGCCCCGACAGCTATTACACACAGTCGCCGCGAGGGTTCAACCTTTACTTCTCAGATGACGGCATCGAGTGGTCTCTGGCCGGTCCTGTCCTCCTCGCAACCCAGACGGCTGCGGGCCAGACATCCACGGGCAAGGTGCCGAGCAAGGTGCGGGTGGCTACCCCTGTCGGAAGCTCGACTCGTGCGGTGGTCGAGACGGCCACAAACCTCCTCGCTGCCGACGCTGGGAACTATCTTCGCTTCACCGCCGTCACCGCTAAAACTCTGACGGTCCAGCTCGAAAGCGTCGAGCCACAGGCGGACAATTCCGAGTGGCATATCCGAAACGCGGCGTCGGCAAACCTGACCGTGGTAGGGGCGTCAGGTGTAACGATCAATGCACCCTACAACGGGTCTCTGATCATCCCGCCGCAAGGCACCGCCACACTCAAGCGCGCTGCCGCCAACACCTACGACCTCATGGGCCAGACCGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
186c0258316d7c0bb6b36271149ece836b0d9faf8386f7cff2e8c626dfddf1e4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2789
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The first characterized phage against a member of the ecologically important #sphingomonads reveals high dissimilarity against all other known phages Nielsen,T.K., Carstens,A.B., Kot,W., Lametsch,R., Neve,H. and Hansen,L.H. 2017 29051555 GenBank