Protein

View in Explore
Genbank accession
ARK07424.1 [GenBank]
Protein name
F5/8 type C domain protein
RBP type
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MPNTPILAIPQLTENQAGKEIVINDAILAIESALGKGLSVSFATASAVTLSVAQITRNFLIKVEGATAACTLTAPDNVAGVATARVFAISNLSNWDCTVKSSSTAADDQVVVPSKQTVMVLIDGTAARKIAASVPNGELRDMTDVDWTTIGNGKVMVWNSATNKFTFVTPLTEATGVPSGGSNGQVLTKVSGATAWANLPESTVAEVPSGGAVNQVLTKTSEEDYAWMDLPPGVELPDFLVLTDTPENYEGAAGKLVVVKADETGLEFVTMPVSLPAGGTEGQVLQRDAAGAAVWGNAPESLPEGGEEGQVLTRAANGDAVWATGGDGGSADYPAFTDNAGKILAVNAAEDGVEWITAPEGGGVVGGSSGSVFAAGMVPYTGPLSGLAGAAAVGQAFTAYADVGMTGAVVAVDSDAGARTYTLFVAEATVTTDSTGQMLPVSAGCVVLGAVLATKNFGTASANTQWQHVFFDSAVEIEEGKTYCIGVIRVEGTTTDPTYVGYSSSEVKTYGFPSKVYSRVAYFTTRSLAGASNAGVDGGTASALCISPFGESVGTGGTGVVSHELPVTNAGGELGTMDGWTVTPAGSMVITSNYGGGSPRSGTYFFAAAAGASSAMSQVIDLSDYANDIDARTVEMDASVYTQTTYTSSERSEFLVEVLGAAGNVLAAYRDQISGIGTMVQFRWNRLSAREWLPAGARSLRVTATSVRLDGTNNDNSFDDFSVVLRVYGSGRAGGSADYPAFAKNAGKVLAVNDAEDGVEWIEPTVAGRVEPLRRTSLFSWDFTKSGELVAGNYDIDVSEYDEIDIIFDRVTKAVSASFVVRFSTDGGVTFDESASYYSDVGNTGTWAYADAALYSSGQSAASRVFMWNVRSLRSSNTGKPIFGNRSALYANHNPVTHVRIVAVSNYTGGAIEVLGVQAAVDPKTITSTVGKHRYWMLKDWTHTQGQSAADRVVGGSALELRATVGGSALPVSAISATDTLSGYPVSNLIDATASTFWCAQYGSNPYIVIDLGADSAVREIAWSGRPDSYYTQSPRGFNLYFSDDGIEWSLAGPVLLATQTAAGQTSTGKVPSKVRVATPVGSSTRAVVETATNLLAADAGNYLRFTAVTAKTLTVQLESVEPQADNSEWHIRNAASANLTVVGASGVTINAPYNGSLIIPPQGTATLKRAAANTYDLMGQTV
Physico‐chemical
properties
protein length:1183 AA
molecular weight: 122610,83870 Da
isoelectric point:4,56175
aromaticity:0,08115
hydropathy:0,03280

Domains

Domains [InterPro]
IPR000421
954–1111
IPR000421
G3DSA:2.60.120.260
968–1132
G3DSA:2.60.120.260
IPR000421
975–1053
IPR000421
IPR008979
976–1055
IPR008979
ARK07424.1
1 1183
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Sphingobium phage Lacusarx
[NCBI] 		1980139 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARK07424.1 [NCBI]
Genbank nucleotide accession
KY629563 [NCBI]
CDS location
range 23924 -> 27475
strand +
CDS
ATGCCCAACACTCCCATCCTCGCCATCCCCCAGCTCACTGAAAATCAGGCTGGTAAGGAAATCGTCATCAATGACGCCATCCTCGCGATCGAAAGCGCGTTGGGTAAGGGCCTGTCCGTCAGCTTCGCCACGGCAAGCGCGGTCACGCTTTCGGTCGCTCAGATCACCCGCAACTTCCTGATCAAGGTGGAGGGCGCCACGGCGGCCTGCACCCTGACGGCACCGGACAATGTGGCAGGTGTGGCGACCGCGCGCGTCTTTGCGATCTCGAACCTCAGCAATTGGGACTGCACGGTCAAGTCGTCCTCGACCGCCGCAGACGATCAGGTTGTCGTGCCCTCGAAGCAGACGGTGATGGTCCTGATCGACGGCACGGCGGCGCGCAAGATCGCGGCGTCCGTTCCGAATGGCGAGCTGCGGGACATGACCGATGTCGATTGGACCACGATCGGCAATGGCAAGGTCATGGTCTGGAACTCGGCCACCAACAAGTTCACCTTCGTCACCCCGCTGACCGAAGCGACCGGCGTCCCGTCCGGAGGCTCGAACGGTCAGGTGCTGACCAAGGTCAGCGGCGCGACCGCGTGGGCGAATCTACCCGAGTCCACGGTGGCGGAGGTGCCGAGCGGAGGTGCCGTCAATCAGGTTCTCACCAAGACCTCGGAGGAGGACTATGCGTGGATGGACCTCCCGCCCGGCGTCGAACTTCCCGACTTCCTTGTCCTGACCGATACCCCGGAGAACTATGAGGGCGCCGCCGGGAAGCTCGTGGTCGTCAAGGCCGACGAGACCGGTCTGGAGTTTGTCACCATGCCGGTATCGCTCCCGGCGGGCGGCACCGAGGGGCAGGTGCTGCAGCGGGACGCTGCTGGTGCCGCCGTCTGGGGAAATGCGCCGGAAAGCCTCCCGGAAGGCGGTGAAGAGGGGCAGGTCCTGACGCGCGCCGCAAATGGCGATGCCGTATGGGCCACCGGCGGAGACGGCGGGTCCGCAGACTACCCCGCGTTCACGGACAACGCCGGTAAGATTCTGGCCGTCAACGCGGCTGAGGATGGCGTAGAGTGGATTACCGCACCAGAGGGGGGCGGGGTTGTCGGCGGTTCCAGTGGGAGCGTGTTCGCGGCCGGGATGGTCCCCTACACTGGACCCCTGTCGGGCCTTGCGGGGGCGGCGGCGGTGGGGCAGGCGTTCACGGCCTACGCCGATGTCGGTATGACGGGGGCGGTCGTCGCGGTGGACTCCGATGCCGGGGCGCGGACCTACACGCTGTTCGTCGCCGAGGCCACCGTAACGACGGACAGCACCGGCCAGATGCTGCCCGTTTCTGCTGGGTGTGTCGTGCTGGGGGCCGTGCTGGCCACCAAGAACTTCGGCACCGCGTCCGCGAACACGCAGTGGCAGCATGTCTTTTTTGATAGTGCAGTGGAGATCGAAGAAGGTAAGACCTACTGCATCGGCGTCATCCGGGTGGAGGGGACGACCACCGACCCGACCTACGTGGGTTACTCGTCGTCGGAGGTGAAGACTTACGGCTTCCCGTCCAAGGTTTACAGTCGTGTAGCTTACTTCACGACGCGGAGTCTGGCGGGCGCGTCCAACGCTGGTGTGGATGGTGGGACGGCATCCGCCCTCTGTATCAGCCCGTTCGGCGAGTCGGTCGGCACCGGCGGGACAGGGGTTGTGAGCCACGAACTACCTGTGACGAACGCGGGCGGCGAGCTTGGCACCATGGATGGGTGGACCGTGACCCCTGCAGGTAGCATGGTCATCACCTCGAACTACGGCGGCGGTTCGCCTCGAAGCGGAACCTACTTCTTCGCCGCCGCCGCCGGTGCCAGTTCCGCCATGTCTCAGGTGATCGACCTGTCGGATTACGCGAACGACATCGACGCGCGCACCGTAGAGATGGACGCTTCGGTATACACGCAGACTACTTACACCTCCTCCGAGCGGTCGGAGTTTCTGGTTGAGGTTCTGGGCGCGGCTGGTAATGTGCTCGCAGCGTATCGGGACCAGATCAGCGGTATCGGGACCATGGTCCAGTTCCGATGGAACCGGCTCAGCGCTCGCGAATGGCTCCCTGCGGGCGCGCGTTCGCTCCGGGTGACGGCCACTTCCGTTCGCCTCGACGGAACCAACAACGACAACAGCTTCGACGATTTTAGCGTTGTGCTCCGGGTTTACGGTTCCGGCCGTGCGGGAGGCTCCGCTGACTACCCTGCTTTCGCGAAAAACGCCGGCAAGGTGTTGGCGGTCAACGACGCAGAGGACGGTGTGGAGTGGATCGAACCCACTGTAGCTGGCCGCGTGGAGCCTCTGCGCCGGACTTCCCTGTTCTCGTGGGACTTCACGAAAAGCGGAGAGCTTGTCGCTGGTAACTACGACATCGACGTGTCCGAATATGACGAGATCGACATCATCTTCGATCGCGTGACTAAGGCTGTGTCAGCCTCTTTCGTGGTCCGTTTCAGCACGGATGGAGGGGTGACGTTTGACGAAAGCGCATCCTACTATTCTGATGTCGGCAACACAGGGACTTGGGCCTACGCGGACGCCGCGCTGTATTCCAGCGGCCAGTCTGCGGCGTCTCGGGTGTTCATGTGGAACGTCCGCTCCTTGCGCTCGTCGAACACGGGCAAGCCGATTTTCGGCAATCGCAGCGCACTGTATGCGAACCACAATCCCGTAACTCATGTCCGAATTGTTGCGGTATCGAACTACACGGGCGGCGCGATTGAAGTGCTTGGCGTGCAAGCTGCTGTCGATCCGAAGACTATCACTAGCACGGTCGGTAAGCACCGCTACTGGATGCTCAAGGATTGGACGCACACGCAGGGGCAGAGCGCCGCCGATCGCGTTGTCGGCGGCTCCGCGCTTGAACTGCGAGCCACGGTAGGTGGGTCAGCGCTACCCGTGTCAGCTATCTCGGCAACGGACACGCTCTCGGGCTACCCTGTGTCCAACCTGATTGATGCAACTGCCAGCACCTTCTGGTGCGCGCAGTATGGGTCCAATCCGTATATTGTGATTGACCTCGGCGCTGATAGTGCAGTGCGTGAGATCGCTTGGTCCGGACGCCCCGACAGCTATTACACACAGTCGCCGCGAGGGTTCAACCTTTACTTCTCAGATGACGGCATCGAGTGGTCTCTGGCCGGTCCTGTCCTCCTCGCAACCCAGACGGCTGCGGGCCAGACATCCACGGGCAAGGTGCCGAGCAAGGTGCGGGTGGCTACCCCTGTCGGAAGCTCGACTCGTGCGGTGGTCGAGACGGCCACAAACCTCCTCGCTGCCGACGCTGGGAACTATCTTCGCTTCACCGCCGTCACCGCTAAAACTCTGACGGTCCAGCTCGAAAGCGTCGAGCCACAGGCGGACAATTCCGAGTGGCATATCCGAAACGCGGCGTCGGCAAACCTGACCGTGGTAGGGGCGTCAGGTGTAACGATCAATGCACCCTACAACGGGTCTCTGATCATCCCGCCGCAAGGCACCGCCACACTCAAGCGCGCTGCCGCCAACACCTACGACCTCATGGGCCAGACCGTATGA

Tertiary structure

PDB ID
186c0258316d7c0bb6b36271149ece836b0d9faf8386f7cff2e8c626dfddf1e4
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2402
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The first characterized phage against a member of the ecologically important #sphingomonads reveals high dissimilarity against all other known phages Nielsen,T.K., Carstens,A.B., Kot,W., Lametsch,R., Neve,H. and Hansen,L.H. 2017 29051555 GenBank