Protein

View in Explore
Genbank accession
AFY98209.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,98
Seq2Symm
C3 confidence 1,000
C3 1,000
D3 0,007
O 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MVYSKHEWQSGELITSAKLNNIENGIYHSTLYNNVKEFGATGDGVTDDSSAFQKAIDAAYANFANLANKETITGSFEVDIPSGVYEISSTLVLPPMVKLKAIGFVQLKYNGKSGTPCIWVKQKDDVSKHSDSIVYKQGYTRGNIIDGGSGGLMILRDGPKDCIGLAVGNNTDLGGNFPVSRYSMQGVMITGFDEGMHWYAIHHYIGNYYSFHLEGNNTNLMVGDDDIALNDSNENFSFYSSVFAAAKTAVYTKTAWDINFFGCSFDFNTVVFKDSSDWGKINLVGCHLENNYHGILQKKLSNYTYTLTLKQCRILLSGNKLFEGKGNVTIRDSNFIEQSFQTIDSLADDTIYLEESNSVYQDKEVIFKLIETLSKDGNMIDRDVSAFLQYGETNAKPLPKTTYNGKPALLVSSSGTSFSTSIGLGVLEDVQPFKHTIHAAIKYVCNHSSDDYNLFFGIAGNNKYKGFRDQVTIFSKTPVAAKNVETLASQKTDYDASSFDTKGIRPYLKISTKDGIDASDFKFYVENVHIKID
Physico‐chemical
properties
protein length:533 AA
molecular weight: 59030,41940 Da
isoelectric point:5,57485
aromaticity:0,11820
hydropathy:-0,29662

Domains

View on InterPro
Domain architecture
AFY98209.1
1 533 aa
STR 32–374 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AFY98209.1
1 533 aa
Domain Start End Length (AA) Confidence
N-terminal 1 48 48 0,9670
Central domain 49 350 303 0,9783
C-terminal 351 533 182 0,9737
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Leuconostoc phage P793 [NCBI] · taxon 1262522
Uroviricota Caudoviricetes Limdunavirus Limdunavirus P793
Host
Leuconostoc pseudomesenteroides [NCBI] · taxon 33968
Bacillota Bacilli Lactobacillales Lactobacillaceae Leuconostoc Leuconostoc pseudomesenteroides

Coding sequence (CDS)

Genbank protein accession
AFY98209.1 [NCBI]
Genbank nucleotide accession
KC013021 [NCBI]
CDS location
range 24367 -> 25968
strand -
CDS
ATGGTTTACAGTAAACACGAGTGGCAAAGCGGTGAATTGATTACGTCAGCTAAATTAAATAATATTGAGAATGGTATATATCACTCAACATTATATAATAATGTTAAAGAGTTTGGCGCTACCGGAGATGGGGTAACAGACGATTCGTCAGCTTTCCAAAAAGCTATTGATGCTGCTTATGCTAATTTTGCTAATTTAGCAAACAAAGAAACCATTACTGGAAGCTTTGAAGTTGATATTCCGAGTGGTGTTTATGAAATAAGCAGTACACTAGTGTTACCTCCGATGGTTAAGTTGAAAGCCATAGGCTTTGTACAATTGAAGTATAACGGCAAGTCAGGAACGCCATGCATTTGGGTTAAACAAAAAGATGATGTTTCAAAACATTCAGATAGTATAGTTTATAAGCAGGGATACACTAGAGGAAACATCATTGACGGCGGTTCAGGCGGTTTAATGATTCTAAGAGATGGTCCAAAAGATTGTATTGGCTTAGCTGTTGGAAATAACACTGATTTAGGTGGAAATTTCCCAGTATCAAGATATTCAATGCAAGGAGTGATGATTACTGGTTTTGATGAGGGTATGCACTGGTACGCAATTCATCATTATATTGGGAACTATTACAGTTTTCATTTAGAAGGTAACAACACAAATCTGATGGTTGGCGATGACGATATTGCACTGAATGATTCGAACGAAAATTTTTCCTTTTATTCATCAGTTTTTGCAGCAGCCAAAACAGCAGTTTATACAAAAACTGCTTGGGATATTAATTTTTTTGGTTGTTCATTTGATTTTAATACTGTAGTTTTCAAAGACTCAAGTGATTGGGGAAAAATTAATCTTGTGGGGTGCCATCTCGAGAATAATTATCATGGAATATTGCAAAAAAAACTATCGAATTATACTTATACTCTTACTTTAAAACAATGCAGAATTCTTTTATCAGGCAACAAGCTTTTTGAAGGTAAAGGAAATGTGACGATACGAGACAGTAACTTCATCGAACAGTCTTTCCAAACAATTGACTCGCTTGCAGATGATACGATTTATTTGGAAGAGTCTAACAGTGTATACCAAGATAAGGAAGTTATATTCAAACTTATTGAAACCCTATCAAAAGATGGAAATATGATAGATAGAGACGTATCAGCCTTTCTTCAGTATGGTGAAACTAATGCAAAGCCTCTTCCAAAAACGACCTATAATGGGAAGCCAGCGCTCCTAGTTTCCAGTTCAGGAACTAGTTTTAGTACCAGCATCGGTCTGGGCGTTTTGGAAGATGTACAGCCTTTTAAACATACCATACATGCAGCTATTAAATATGTATGTAATCATAGTTCAGATGATTATAATTTATTTTTTGGCATTGCTGGTAATAATAAGTACAAAGGGTTCAGAGACCAAGTAACAATTTTTTCTAAGACACCAGTGGCTGCTAAAAACGTTGAAACTCTAGCTAGTCAAAAAACAGATTATGACGCGTCTTCTTTTGACACCAAAGGAATTAGACCGTACCTTAAGATTAGTACCAAAGACGGTATTGACGCTAGCGATTTTAAATTTTACGTTGAAAATGTCCATATTAAAATTGATTAA

Genome Context

Tertiary structure

AFY98209.1
ESMFold structure
Source ESMFold
pLDDT 73.8
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Identification of the Receptor-Binding Protein in Lytic Leuconostoc pseudomesenteroides Bacteriophages Kot,W., Hammer,K., Neve,H. and Vogensen,F.K. 2013 23503306 GenBank