Protein

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Genbank accession
AFY98209.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MVYSKHEWQSGELITSAKLNNIENGIYHSTLYNNVKEFGATGDGVTDDSSAFQKAIDAAYANFANLANKETITGSFEVDIPSGVYEISSTLVLPPMVKLKAIGFVQLKYNGKSGTPCIWVKQKDDVSKHSDSIVYKQGYTRGNIIDGGSGGLMILRDGPKDCIGLAVGNNTDLGGNFPVSRYSMQGVMITGFDEGMHWYAIHHYIGNYYSFHLEGNNTNLMVGDDDIALNDSNENFSFYSSVFAAAKTAVYTKTAWDINFFGCSFDFNTVVFKDSSDWGKINLVGCHLENNYHGILQKKLSNYTYTLTLKQCRILLSGNKLFEGKGNVTIRDSNFIEQSFQTIDSLADDTIYLEESNSVYQDKEVIFKLIETLSKDGNMIDRDVSAFLQYGETNAKPLPKTTYNGKPALLVSSSGTSFSTSIGLGVLEDVQPFKHTIHAAIKYVCNHSSDDYNLFFGIAGNNKYKGFRDQVTIFSKTPVAAKNVETLASQKTDYDASSFDTKGIRPYLKISTKDGIDASDFKFYVENVHIKID
Physico‐chemical
properties
protein length:533 AA
molecular weight: 59030,41940 Da
isoelectric point:5,57485
aromaticity:0,11820
hydropathy:-0,29662

Domains

Domains [InterPro]
DC_0903
STR
28–516
DC_0903
IPR011050
STR
32–317
IPR011050
IPR012334
STR
32–374
IPR012334
IPR024535
ENZ
34–265
IPR024535
AFY98209.1
1 533
Architecture
STR
STR 28-516 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AFY98209.1
1 533
Domain Start End Length (AA) Confidence
N-terminal 1 48 48 0,9670
Central domain 49 350 303 0,9783
C-terminal 351 533 182 0,9737
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-48
Central
49-350
C-terminal
351-533

Taxonomy

  Name Taxonomy ID Lineage
Phage Leuconostoc phage P793
[NCBI] 		1262522 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Leuconostoc pseudomesenteroides
[NCBI] 		33968 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFY98209.1 [NCBI]
Genbank nucleotide accession
KC013021 [NCBI]
CDS location
range 24367 -> 25968
strand -
CDS
ATGGTTTACAGTAAACACGAGTGGCAAAGCGGTGAATTGATTACGTCAGCTAAATTAAATAATATTGAGAATGGTATATATCACTCAACATTATATAATAATGTTAAAGAGTTTGGCGCTACCGGAGATGGGGTAACAGACGATTCGTCAGCTTTCCAAAAAGCTATTGATGCTGCTTATGCTAATTTTGCTAATTTAGCAAACAAAGAAACCATTACTGGAAGCTTTGAAGTTGATATTCCGAGTGGTGTTTATGAAATAAGCAGTACACTAGTGTTACCTCCGATGGTTAAGTTGAAAGCCATAGGCTTTGTACAATTGAAGTATAACGGCAAGTCAGGAACGCCATGCATTTGGGTTAAACAAAAAGATGATGTTTCAAAACATTCAGATAGTATAGTTTATAAGCAGGGATACACTAGAGGAAACATCATTGACGGCGGTTCAGGCGGTTTAATGATTCTAAGAGATGGTCCAAAAGATTGTATTGGCTTAGCTGTTGGAAATAACACTGATTTAGGTGGAAATTTCCCAGTATCAAGATATTCAATGCAAGGAGTGATGATTACTGGTTTTGATGAGGGTATGCACTGGTACGCAATTCATCATTATATTGGGAACTATTACAGTTTTCATTTAGAAGGTAACAACACAAATCTGATGGTTGGCGATGACGATATTGCACTGAATGATTCGAACGAAAATTTTTCCTTTTATTCATCAGTTTTTGCAGCAGCCAAAACAGCAGTTTATACAAAAACTGCTTGGGATATTAATTTTTTTGGTTGTTCATTTGATTTTAATACTGTAGTTTTCAAAGACTCAAGTGATTGGGGAAAAATTAATCTTGTGGGGTGCCATCTCGAGAATAATTATCATGGAATATTGCAAAAAAAACTATCGAATTATACTTATACTCTTACTTTAAAACAATGCAGAATTCTTTTATCAGGCAACAAGCTTTTTGAAGGTAAAGGAAATGTGACGATACGAGACAGTAACTTCATCGAACAGTCTTTCCAAACAATTGACTCGCTTGCAGATGATACGATTTATTTGGAAGAGTCTAACAGTGTATACCAAGATAAGGAAGTTATATTCAAACTTATTGAAACCCTATCAAAAGATGGAAATATGATAGATAGAGACGTATCAGCCTTTCTTCAGTATGGTGAAACTAATGCAAAGCCTCTTCCAAAAACGACCTATAATGGGAAGCCAGCGCTCCTAGTTTCCAGTTCAGGAACTAGTTTTAGTACCAGCATCGGTCTGGGCGTTTTGGAAGATGTACAGCCTTTTAAACATACCATACATGCAGCTATTAAATATGTATGTAATCATAGTTCAGATGATTATAATTTATTTTTTGGCATTGCTGGTAATAATAAGTACAAAGGGTTCAGAGACCAAGTAACAATTTTTTCTAAGACACCAGTGGCTGCTAAAAACGTTGAAACTCTAGCTAGTCAAAAAACAGATTATGACGCGTCTTCTTTTGACACCAAAGGAATTAGACCGTACCTTAAGATTAGTACCAAAGACGGTATTGACGCTAGCGATTTTAAATTTTACGTTGAAAATGTCCATATTAAAATTGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
30a17bdbb87e661a6191570f7132734fa88da74426425f4f96c1b342bf617677
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7378
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification of the Receptor-Binding Protein in Lytic Leuconostoc pseudomesenteroides Bacteriophages Kot,W., Hammer,K., Neve,H. and Vogensen,F.K. 2013 23503306 GenBank