Protein

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Genbank accession
AXG66769.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKSLKLMFCLLFVSCFSFGSTIVTSVGNSTFVSDSNGTTVYNKVGNQIYGSDGTSVNRYGNTTILNDGQGNSTIYNKVGNSTLGSDGTLIQNVGGSTFITDGNGKTTVCSHVGNSTFCN
Physico‐chemical
properties
protein length:119 AA
molecular weight: 12409,59690 Da
isoelectric point:7,64316
aromaticity:0,09244
hydropathy:-0,05882

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXG66769.1
1 119
Domain Start End Length (AA) Confidence
N-terminal 1 86 86 0,2494
Central domain 87 108 23 0,8726
C-terminal 109 119 10 0,1418
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-86
Central
87-108
C-terminal
109-119

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoM_JA29
[NCBI] 		2283031 Uroviricota > Caudoviricetes > Salmondvirus >
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXG66769.1 [NCBI]
Genbank nucleotide accession
MH460461 [NCBI]
CDS location
range 27481 -> 27840
strand +
CDS
ATGAAATCTTTAAAACTTATGTTCTGCCTTTTGTTTGTTTCCTGTTTCAGCTTCGGAAGCACTATCGTAACTTCTGTCGGAAACAGTACATTTGTTTCGGATAGTAACGGAACAACGGTATACAACAAGGTGGGAAATCAGATTTACGGAAGCGATGGAACATCTGTAAATAGGTATGGTAACACCACTATTCTGAATGACGGGCAAGGCAATTCCACCATCTATAATAAAGTTGGTAACAGCACGTTAGGCAGCGACGGCACGCTGATTCAGAATGTAGGCGGCAGCACTTTTATTACTGACGGCAACGGTAAAACAACTGTTTGCTCTCATGTAGGAAACTCAACCTTCTGCAATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
944d50a50edadf238737d6d9c0b7a4702ab907cffea1d78c9f5e85f41a584f4e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7543
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank