Protein
- Genbank accession
- AXG66769.1 [GenBank]
- Protein name
- hypothetical protein
- RBP type
-
TSP
- Seq2Symm
-
C7-C9 confidence 0,026
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).C7-C9 0,026 C1 0,005 C3 0,002 - Protein sequence
-
MKSLKLMFCLLFVSCFSFGSTIVTSVGNSTFVSDSNGTTVYNKVGNQIYGSDGTSVNRYGNTTILNDGQGNSTIYNKVGNSTLGSDGTLIQNVGGSTFITDGNGKTTVCSHVGNSTFCN
- Physico‐chemical
properties -
protein length: 119 AA molecular weight: 12409,59690 Da isoelectric point: 7,64316 aromaticity: 0,09244 hydropathy: -0,05882
Tail Spike Domain Segmentation
Segmented into three structural domains: N-terminal, central, and C-terminal.
Domain layout
AXG66769.1
1
119 aa
| Domain | Start | End | Length (AA) | Confidence |
|---|---|---|---|---|
| N-terminal | 1 | 86 | 86 | 0,2494 |
| Central domain | 87 | 108 | 23 | 0,8726 |
| C-terminal | 109 | 119 | 10 | 0,1418 |
Note: Constraints were applied during segmentation.
Fixed 24 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary
Fixed 24 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary
N-terminal
Central domain
C-terminal
View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.
Taxonomy
Coding sequence (CDS)
Genbank protein accession
AXG66769.1
[NCBI]
Genbank nucleotide accession
MH460461
[NCBI]
CDS location
range 27481 -> 27840
strand +
strand +
CDS
ATGAAATCTTTAAAACTTATGTTCTGCCTTTTGTTTGTTTCCTGTTTCAGCTTCGGAAGCACTATCGTAACTTCTGTCGGAAACAGTACATTTGTTTCGGATAGTAACGGAACAACGGTATACAACAAGGTGGGAAATCAGATTTACGGAAGCGATGGAACATCTGTAAATAGGTATGGTAACACCACTATTCTGAATGACGGGCAAGGCAATTCCACCATCTATAATAAAGTTGGTAACAGCACGTTAGGCAGCGACGGCACGCTGATTCAGAATGTAGGCGGCAGCACTTTTATTACTGACGGCAACGGTAAAACAACTGTTTGCTCTCATGTAGGAAACTCAACCTTCTGCAATTAG
Genome Context
Tertiary structure
Literature
| Title | Authors | Date | PMID | Source |
|---|---|---|---|---|
| Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani | Day,A.W., Ahn,J. and Salmond,G.P.C. | 2018 | 30258425 | GenBank |