Protein

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Genbank accession
YP_010300538.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRTGNLDLMLGAQIKNFRPEVLAADPIVGDLVATQTARIWYNSTEDKYKYFNGTVIKELGGSGGSVEGAILADGTVPMTADLELSGPDQSASGDNAAVSKKHVETVVATKQDKISGLTENAVVIAGADSALESSTVTAAELGYLSGATSNLQSQITTVSNKANANELALGGKLNAANGQLTGDLDANGNTVANLAAPANPNDAARKIDIDNALAGIDWMKDSNGIQTDGTLDPVLEKDAQYIILAADQVNPNFGSITGLTDNMVVRYDGAAFVIVFDPTDSEAGGAVTWVKDIKEYRRFDGTQWTTFGGASDFNAGSGLEKAGNVVNVVVGAGIQITANAVTAKLDANGGLEDNAGSTRVKLDGATLSRSVDGIAITDGGVGYEQIAAAVLGTGLKQDVDNSKIIVDVAAVKTAGGFIDATGGDVDHINLTGVGALTDASAVSKKYVDDAIAAGSSGSAAKVYQYDKTASGDVAATAHTFTHNAGHKFGTVTVVDDTGYQIIPDEVVFIDANSLRVELTTAKKVAIAFVTGTNTYVEPEA
Physico‐chemical
properties
protein length:540 AA
molecular weight: 55393,67230 Da
isoelectric point:4,41096
aromaticity:0,05556
hydropathy:-0,04222

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010300538.1
1 540
Domain Start End Length (AA) Confidence
N-terminal 1 447 447 0,9262
Central domain 448 529 83 0,0030
C-terminal 530 540 10 0,9925
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-447
Central
448-529
C-terminal
530-540

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_2
[NCBI] 		2869547 Uroviricota > Caudoviricetes > Alexandravirus >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010300538.1 [NCBI]
Genbank nucleotide accession
NC_061443 [NCBI]
CDS location
range 60642 -> 62264
strand -
CDS
ATGCGTACTGGTAATCTTGATTTAATGCTCGGCGCCCAGATTAAGAACTTCCGTCCTGAGGTTCTTGCTGCCGACCCTATCGTTGGTGATCTGGTTGCAACCCAGACAGCACGTATCTGGTACAACAGCACCGAAGACAAGTACAAATACTTCAACGGCACTGTGATCAAAGAGCTGGGAGGCAGCGGTGGTTCTGTAGAAGGTGCTATCCTCGCAGACGGTACCGTGCCAATGACTGCTGACCTCGAACTGTCTGGTCCTGACCAGTCTGCAAGTGGTGACAACGCGGCGGTTTCTAAGAAACACGTTGAGACTGTTGTTGCTACCAAGCAAGACAAAATCAGTGGTCTGACTGAGAACGCAGTTGTTATCGCCGGCGCTGATTCCGCACTGGAAAGCTCTACCGTTACTGCTGCTGAACTGGGCTATCTGTCTGGCGCGACTTCTAACCTCCAGTCTCAGATCACTACCGTCAGCAACAAAGCTAACGCGAACGAACTGGCTCTGGGCGGTAAGCTGAATGCTGCAAACGGCCAACTGACAGGCGACCTCGATGCTAACGGTAACACCGTTGCTAACCTGGCTGCTCCAGCTAACCCGAACGACGCTGCTCGTAAGATCGATATCGACAACGCGCTGGCGGGTATCGACTGGATGAAAGACTCCAACGGCATTCAGACCGATGGTACTCTGGACCCTGTTCTGGAAAAAGACGCGCAGTACATCATCCTGGCGGCTGACCAAGTGAATCCGAACTTCGGTTCTATTACTGGTCTGACTGACAACATGGTTGTTCGCTATGACGGCGCTGCGTTCGTTATCGTCTTCGACCCGACTGACAGCGAAGCTGGCGGTGCAGTTACCTGGGTTAAAGACATTAAAGAGTATCGTCGTTTTGACGGCACTCAGTGGACTACCTTCGGTGGTGCATCTGACTTCAACGCAGGCTCCGGTCTGGAAAAAGCTGGCAACGTCGTTAACGTAGTTGTTGGCGCCGGTATTCAGATCACTGCTAACGCTGTGACTGCTAAACTGGATGCTAACGGCGGTCTGGAAGACAACGCTGGTTCTACTCGCGTTAAACTGGACGGCGCTACCCTGTCTCGCTCTGTAGACGGTATCGCAATCACCGACGGTGGTGTTGGCTACGAGCAGATTGCTGCTGCTGTTCTGGGCACTGGCCTGAAACAGGATGTAGACAATAGCAAAATCATCGTTGACGTTGCTGCTGTTAAAACTGCTGGTGGCTTCATCGACGCTACTGGTGGTGACGTAGACCACATCAACCTGACTGGTGTTGGCGCTCTGACCGATGCTTCTGCTGTTAGCAAGAAGTACGTTGACGACGCAATCGCTGCTGGCTCAAGCGGTTCTGCTGCTAAAGTCTATCAGTACGATAAGACTGCAAGTGGTGACGTTGCTGCTACTGCGCACACCTTCACGCACAATGCTGGACACAAGTTCGGTACCGTCACTGTTGTTGATGACACTGGCTACCAGATCATCCCTGATGAAGTTGTGTTCATCGACGCGAACAGCCTGCGTGTTGAGCTGACCACCGCGAAGAAAGTTGCAATCGCATTCGTAACTGGCACCAACACTTACGTTGAGCCCGAAGCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3e8be1bf1d94c8f23308e0d03c1051b328b3812ac6078cef136552166583c080
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7405
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_2 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank