Protein

View in Explore
Genbank accession
YP_010300538.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,89
Seq2Symm
C3 confidence 0,956
C3 0,956
C1 0,252
C2 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MRTGNLDLMLGAQIKNFRPEVLAADPIVGDLVATQTARIWYNSTEDKYKYFNGTVIKELGGSGGSVEGAILADGTVPMTADLELSGPDQSASGDNAAVSKKHVETVVATKQDKISGLTENAVVIAGADSALESSTVTAAELGYLSGATSNLQSQITTVSNKANANELALGGKLNAANGQLTGDLDANGNTVANLAAPANPNDAARKIDIDNALAGIDWMKDSNGIQTDGTLDPVLEKDAQYIILAADQVNPNFGSITGLTDNMVVRYDGAAFVIVFDPTDSEAGGAVTWVKDIKEYRRFDGTQWTTFGGASDFNAGSGLEKAGNVVNVVVGAGIQITANAVTAKLDANGGLEDNAGSTRVKLDGATLSRSVDGIAITDGGVGYEQIAAAVLGTGLKQDVDNSKIIVDVAAVKTAGGFIDATGGDVDHINLTGVGALTDASAVSKKYVDDAIAAGSSGSAAKVYQYDKTASGDVAATAHTFTHNAGHKFGTVTVVDDTGYQIIPDEVVFIDANSLRVELTTAKKVAIAFVTGTNTYVEPEA
Physico‐chemical
properties
protein length:540 AA
molecular weight: 55393,67230 Da
isoelectric point:4,41096
aromaticity:0,05556
hydropathy:-0,04222

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010300538.1
1 540 aa
Domain Start End Length (AA) Confidence
N-terminal 1 447 447 0,9262
Central domain 448 529 83 0,0030
C-terminal 530 540 10 0,9925
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Erwinia phage pEa_SNUABM_2 [NCBI] · taxon 2869547
Uroviricota Caudoviricetes Alexandravirus Alexandravirus SNUABM2
Host
Erwinia amylovora [NCBI] · taxon 552
Pseudomonadota Gammaproteobacteria Enterobacterales Erwiniaceae Erwinia Erwinia amylovora

Coding sequence (CDS)

Genbank protein accession
YP_010300538.1 [NCBI]
Genbank nucleotide accession
NC_061443 [NCBI]
CDS location
range 60642 -> 62264
strand -
CDS
ATGCGTACTGGTAATCTTGATTTAATGCTCGGCGCCCAGATTAAGAACTTCCGTCCTGAGGTTCTTGCTGCCGACCCTATCGTTGGTGATCTGGTTGCAACCCAGACAGCACGTATCTGGTACAACAGCACCGAAGACAAGTACAAATACTTCAACGGCACTGTGATCAAAGAGCTGGGAGGCAGCGGTGGTTCTGTAGAAGGTGCTATCCTCGCAGACGGTACCGTGCCAATGACTGCTGACCTCGAACTGTCTGGTCCTGACCAGTCTGCAAGTGGTGACAACGCGGCGGTTTCTAAGAAACACGTTGAGACTGTTGTTGCTACCAAGCAAGACAAAATCAGTGGTCTGACTGAGAACGCAGTTGTTATCGCCGGCGCTGATTCCGCACTGGAAAGCTCTACCGTTACTGCTGCTGAACTGGGCTATCTGTCTGGCGCGACTTCTAACCTCCAGTCTCAGATCACTACCGTCAGCAACAAAGCTAACGCGAACGAACTGGCTCTGGGCGGTAAGCTGAATGCTGCAAACGGCCAACTGACAGGCGACCTCGATGCTAACGGTAACACCGTTGCTAACCTGGCTGCTCCAGCTAACCCGAACGACGCTGCTCGTAAGATCGATATCGACAACGCGCTGGCGGGTATCGACTGGATGAAAGACTCCAACGGCATTCAGACCGATGGTACTCTGGACCCTGTTCTGGAAAAAGACGCGCAGTACATCATCCTGGCGGCTGACCAAGTGAATCCGAACTTCGGTTCTATTACTGGTCTGACTGACAACATGGTTGTTCGCTATGACGGCGCTGCGTTCGTTATCGTCTTCGACCCGACTGACAGCGAAGCTGGCGGTGCAGTTACCTGGGTTAAAGACATTAAAGAGTATCGTCGTTTTGACGGCACTCAGTGGACTACCTTCGGTGGTGCATCTGACTTCAACGCAGGCTCCGGTCTGGAAAAAGCTGGCAACGTCGTTAACGTAGTTGTTGGCGCCGGTATTCAGATCACTGCTAACGCTGTGACTGCTAAACTGGATGCTAACGGCGGTCTGGAAGACAACGCTGGTTCTACTCGCGTTAAACTGGACGGCGCTACCCTGTCTCGCTCTGTAGACGGTATCGCAATCACCGACGGTGGTGTTGGCTACGAGCAGATTGCTGCTGCTGTTCTGGGCACTGGCCTGAAACAGGATGTAGACAATAGCAAAATCATCGTTGACGTTGCTGCTGTTAAAACTGCTGGTGGCTTCATCGACGCTACTGGTGGTGACGTAGACCACATCAACCTGACTGGTGTTGGCGCTCTGACCGATGCTTCTGCTGTTAGCAAGAAGTACGTTGACGACGCAATCGCTGCTGGCTCAAGCGGTTCTGCTGCTAAAGTCTATCAGTACGATAAGACTGCAAGTGGTGACGTTGCTGCTACTGCGCACACCTTCACGCACAATGCTGGACACAAGTTCGGTACCGTCACTGTTGTTGATGACACTGGCTACCAGATCATCCCTGATGAAGTTGTGTTCATCGACGCGAACAGCCTGCGTGTTGAGCTGACCACCGCGAAGAAAGTTGCAATCGCATTCGTAACTGGCACCAACACTTACGTTGAGCCCGAAGCCTAA

Genome Context

Tertiary structure

YP_010300538.1
ESMFold structure
Source ESMFold
pLDDT 74.1
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_2 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank