Protein

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Genbank accession
WVX90423.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MNPTYLKQIMQLAWQFFKQTGLKFSECLKKAWANYKLKKRMQQGIVRFYFQKVDGTIREAWGTLKADLMPETKGSERKENPTTQVYFDTEVNEFRCFKKFNLIY
Physico‐chemical
properties
protein length:104 AA
molecular weight: 12537,48510 Da
isoelectric point:9,69677
aromaticity:0,16346
hydropathy:-0,66154

Domains

Domains [InterPro]
IPR024401
STR
35–103
IPR024401
WVX90423.1
1 104
Architecture
STR
STR 35-103 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage vB_RanS_GDF21
[NCBI] 		3113642 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Riemerella anatipestifer
[NCBI] 		34085 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVX90423.1 [NCBI]
Genbank nucleotide accession
PP067981.1 [NCBI]
CDS location
range 710 -> 1024
strand +
CDS
ATGAACCCAACATATTTAAAACAAATAATGCAATTAGCGTGGCAGTTTTTCAAACAAACAGGTTTAAAATTTAGCGAATGCCTAAAAAAAGCGTGGGCAAATTACAAACTAAAAAAGAGAATGCAACAGGGTATTGTTCGTTTCTACTTTCAAAAGGTAGACGGTACTATCAGAGAAGCGTGGGGTACTTTGAAAGCCGATTTAATGCCTGAAACCAAAGGTTCAGAACGAAAAGAAAACCCAACCACACAAGTCTATTTTGATACAGAGGTCAATGAGTTTAGGTGTTTTAAAAAGTTTAATTTAATATATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8f546c72a5332b0750713332a19b46a8d5796a825831a57bfec9473a4ca7508a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8594
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome analysis of phage vB_RanS_GDF21 against Riemerella anatipestifer Liu,C., Zhao,Y., Cao,S., Zhu,X. and Li,Y. 2012-06-15 — GenBank