Phage RBP Database

Genbank accession

UJB55396.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,79

TF

Evidence RBPdetect2

Probability 0,70

Seq2Symm

C3 confidence 0,986

C3	0,986
C1	0,020
D3	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MADLKLGTTLGGAGIWSASNLPLLPSGGQLTYKGWRVYTENDRPTAEDINALSTINGGTVAKNTTFSQNVTVGVNLTANAVYSKSFVDITTAGGNPTMVFRRSDLSGTPSNEQGVMQIAGYNGSNIPLATLNINARADGGNRIYLNAYKNGVSNTSFVVDSQTQQVSVEQGSFRVIGTSNLGVTNAASLAVTGAMSANTITPTNWSNHDERYITGIPRGMSGTSFGAAVVTEKNDVLSVGGNVTDGPYGNTTYYGQVVNYRRTLNTGVSLVQTYFGNEMWVRLGSGSPGAWSWNQGDANGWRRVYDTVTPPTPAEVGAVSRTGDSMTGQLWMSADISMRGTVSRHFRFEYLKNDGTTAVDAYIYKDGVDNPTRRQGVRINCGTPNRVSGNTSNSGDFVFGEDGNFTLPGGGMINQDGLNQNVYCMSALSTTAAGSKNYLRRFRGGNSDTIWHETVQQGTYRLATGNTDAQDVITLTSAWVRFNGEVVSESANGLRIAYGNVGSFIRSDGSNTYFLLTNSGDVYGTYNGLRPIYFSNTTGAVTMGHTLSVGGRISQSSSYIENGLMNLNGSGNSQIYFTRSGANPRDMYIFHAGDASRGNRVEISDTTSYLAYFERHPSNGIQLIMNGNGSFNDVYIRSDERLKSNFGKIENALDKVELLNGVVYDKANHIGGDETTREAGLIAQQLQAVLPEAVKNGVDGEQNEILTISPVAVIALLVNAIKELREEVRELKTR

Physico‐chemical properties

protein length:	734 AA
molecular weight:	78855,25310 Da
isoelectric point:	5,92640
aromaticity:	0,08583
hydropathy:	-0,35232

Domain architecture

UJB55396.1

1 734 aa

ATT 480–533 · CHP 638–734

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR048390
ATT

IPR048390 IPR030392 Coil

IPR030392
CHP

IPR030392

UJB55396.1

1734 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0152
STR

DC_0152

UJB55396.1

1734 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR048390	ATT	DC_0836	480	533	InterPro cluster	Long-tail fiber proximal subunit, trimerization domain	C-terminal	Medium	Text match	656 proteins / 656 hits
IPR030392	CHP	DC_0088	638	695	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
IPR030392	CHP	DC_0088	638	734	InterPro cluster	Intramolecular chaperone auto-processing domain	C-terminal	High	Text match	3502 proteins / 3959 hits
Coil	Unmapped	-	714	734	Coils	Coil	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

UJB55396.1

1 734 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	261	261	0,1661
Central domain	262	460	200	0,2491
C-terminal	461	734	273	0,8579

Note: Constraints were applied during segmentation.
Fixed 146 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Enterobacter phage vB_EcRAM-01 [NCBI] · taxon 2898457

Uroviricota Caudoviricetes Pantevenvirales Straboviridae Pseudotevenvirus Enterobacter phage vB_EcRAM-01

Host

Enterobacter cloacae complex [NCBI] · taxon 354276

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Enterobacter

Genbank protein accession

UJB55396.1 [NCBI]

Genbank nucleotide accession

OL551674 [NCBI]

CDS location

range 171193 -> 173397
strand +

CDS

ATGGCTGATTTGAAATTAGGTACAACGCTGGGTGGTGCGGGTATCTGGAGTGCTTCTAACCTTCCTCTATTGCCCTCTGGTGGACAATTAACGTATAAAGGCTGGAGAGTATACACAGAGAATGATCGCCCAACAGCAGAAGATATAAACGCGCTATCGACGATTAACGGCGGTACTGTTGCGAAGAATACTACGTTTAGTCAAAACGTGACCGTAGGTGTTAATTTAACCGCAAATGCGGTATATTCAAAAAGTTTTGTTGACATTACCACTGCTGGCGGTAATCCGACTATGGTGTTTAGACGATCCGACCTTTCGGGAACCCCGTCAAATGAACAGGGTGTTATGCAGATAGCGGGTTATAATGGTTCGAATATTCCGTTAGCCACGCTGAACATAAACGCCCGTGCTGATGGTGGCAACAGGATCTACCTGAACGCGTACAAAAACGGGGTGTCAAATACTTCATTTGTCGTTGATTCACAAACTCAACAGGTATCCGTTGAGCAAGGTTCTTTCCGTGTAATCGGGACTTCTAACCTCGGCGTAACGAATGCTGCATCACTGGCTGTTACTGGTGCAATGAGTGCAAACACAATTACTCCGACGAACTGGTCAAACCACGATGAACGTTATATCACGGGTATTCCTCGCGGTATGTCTGGAACTAGTTTCGGGGCTGCTGTTGTTACTGAAAAGAACGATGTTCTGTCAGTTGGTGGTAACGTAACGGACGGCCCATACGGGAATACTACGTATTACGGTCAAGTTGTCAACTATCGCCGTACTCTGAATACTGGCGTTTCACTGGTTCAAACGTACTTCGGGAACGAAATGTGGGTTCGTCTTGGATCTGGTTCACCTGGTGCGTGGTCATGGAACCAGGGCGATGCTAATGGTTGGCGACGTGTTTACGACACGGTAACTCCACCAACTCCGGCAGAAGTGGGGGCGGTAAGTCGCACAGGCGATTCAATGACGGGTCAGTTATGGATGTCTGCGGATATCAGTATGCGTGGAACCGTAAGCCGTCACTTCCGTTTCGAATACTTGAAAAACGATGGTACAACAGCGGTTGACGCGTATATCTATAAAGATGGTGTTGACAACCCTACTCGTCGTCAGGGTGTTCGCATCAACTGCGGTACGCCTAACCGTGTGAGTGGGAACACATCAAACTCCGGTGATTTTGTTTTCGGTGAAGATGGTAATTTTACGCTTCCTGGTGGTGGTATGATCAACCAGGATGGTTTGAACCAGAACGTTTATTGCATGAGTGCATTAAGCACAACGGCAGCAGGTTCAAAGAATTATCTTCGTCGCTTCCGTGGTGGTAACTCGGACACGATCTGGCATGAAACTGTTCAACAGGGTACATATCGTTTAGCAACAGGCAACACCGATGCTCAAGATGTAATAACACTTACTTCTGCATGGGTTCGTTTTAATGGTGAAGTTGTTTCGGAATCCGCAAACGGGCTGCGTATTGCTTACGGTAACGTAGGTTCCTTTATTCGAAGTGATGGAAGCAACACATATTTCCTGTTGACAAACAGCGGGGATGTTTACGGGACTTACAACGGATTACGCCCGATTTATTTCAGCAACACGACAGGTGCTGTCACGATGGGACATACGTTGAGTGTTGGCGGACGTATTAGCCAGTCAAGTAGTTATATTGAGAATGGCTTGATGAACTTAAATGGTTCAGGCAACTCACAGATTTATTTTACACGAAGCGGTGCAAACCCTCGCGATATGTATATCTTCCATGCTGGTGATGCTAGTCGCGGAAACCGTGTAGAAATTTCTGATACAACATCGTACCTGGCTTATTTTGAACGTCATCCATCTAACGGCATTCAATTAATAATGAACGGTAATGGTAGCTTTAACGATGTGTATATTCGTTCCGATGAAAGACTGAAAAGCAATTTCGGTAAAATTGAAAATGCACTTGATAAAGTTGAACTGTTGAATGGTGTTGTGTATGACAAAGCGAATCATATCGGTGGTGATGAAACTACCCGTGAAGCTGGCTTGATTGCACAACAACTGCAAGCAGTATTGCCGGAAGCAGTTAAGAATGGCGTTGATGGTGAACAAAACGAGATCTTGACTATTTCGCCTGTTGCTGTTATCGCCTTGCTGGTTAATGCGATTAAAGAACTCCGTGAGGAAGTCAGGGAACTCAAAACCCGCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)