Phage RBP Database

Genbank accession

XXN61671.1 [GenBank]

Protein name

non-contractile tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,89

Seq2Symm

C3 confidence 0,999

C3	0,999
C1	0,002
D3	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAFSWQEQIKSAGTQDIQCDIEYLDKSYIHVYLDGVETTGYTWTSSTNIRLNTALAADTTVLLIRKTEREYLYIEFASGSPFIEVNVDSQNTQFLHLAQELVEGRAIPGFYGDISMNGYRITNLADPTNAQDAATKGYVDSGDMELQQQITSSFNRSLRVPDSSINQLPSAQDRAWKSLGFDGVGQPTLQDPAGTGLWGYVPTTGSFEQGARLTQRFEVLLWESTNEYWRWDGAMPKDILPDSTPATAGGTGPGKWVDVTDATLRGNLASSAVGLGIGLVNTVYGEMADRILRRIYGFNVCAYGARSIGEDGYEDFDSRVAIQSAIDAAHSAWLATGSVQNVFFPSGSTFLVSSVPAVMESGVTSGLWCLRMRSGVRLAGGGTIKLAANAFAADTTLFRMIGSDSGGTTRPTDVHFEGVTLDGNLENQVANSNAHGIWVYTLGNSSITKCKFHDIAGCGGSLRGMIETPAKNIEVTGNRATNCGNIGLQVSWFDGLIVTGNIVRDCTDNGIDIYGNSGASGQPTGLNFSVSDNFVYNCLTGLFIETVANGAVTGNTLQGNTQNIQVNRINSQPRNITIAGNTIADGVYGIRVQGDMRGVEITGNTIRGYSSSAFRLGNTSGGNVSYVNIRNNTIIPTVATSYVVWIGGGTASRITVKHNTVENSIGLTAEYLYHNEAATNVQVTVGAWKFWGGSLSDTGVESYSEGTFSPIVSGGTTGGTGTYTNQYGKYTKIGNIVHFTLSVAWSAHTGAGAILVGNLPFAASSDNNQTINAAISSVSAATTSARLFMRNVNGSTVAQMVFFDGAAANSYPQINSAGGYVQVSGFYFVS

Physico‐chemical properties

protein length:	830 AA
molecular weight:	88319,98520 Da
isoelectric point:	5,02254
aromaticity:	0,09518
hydropathy:	-0,10711

Domain architecture

XXN61671.1

1 830 aa

ATT 13–103 · ATT 199–271 · STR 297–700 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005604
ATT

IPR005604 G3DSA:2.10.10.80 IPR012334

IPR040775
RBD

IPR040775 IPR011050 IPR006626 IPR006626 IPR006626

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR006626

IPR039448
ENZ

IPR039448 IPR011050

XXN61671.1

1830 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1609
STR

DC_1609 DC_2088

XXN61671.1

1830 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	13	103	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	199	271	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	203	261	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR006626	Unmapped	-	259	281	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR012334	STR	IPR012334	297	687	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	311	567	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	411	441	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR039448	ENZ	DC_0799	424	517	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	470	491	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	493	515	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	525	546	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	527	700	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	547	568	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	573	594	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	596	618	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	651	671	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XXN61671.1

1 830 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	312	312	0,9934
Central domain	313	692	381	0,9882
C-terminal	693	830	137	0,9833

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Klebsiella phage RMN1 [NCBI] · taxon 3443505

Klebsiella phage RMN1

Host

Klebsiella pneumoniae [NCBI] · taxon 573

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Klebsiella Klebsiella pneumoniae

Genbank protein accession

XXN61671.1 [NCBI]

Genbank nucleotide accession

PV804878.1 [NCBI]

CDS location

range 37372 -> 39864
strand +

CDS

ATGGCATTCAGCTGGCAAGAACAAATCAAGTCAGCTGGTACCCAGGATATCCAGTGTGATATTGAATATTTGGACAAGTCCTATATTCACGTATATCTCGATGGCGTTGAAACCACTGGATACACTTGGACCAGCTCTACTAATATTAGGCTGAACACAGCCTTAGCAGCGGACACTACGGTGCTGCTCATTCGCAAGACTGAGCGGGAGTACTTGTATATTGAGTTCGCCAGCGGCTCTCCGTTCATTGAGGTGAACGTAGATTCTCAGAACACGCAGTTCCTGCACCTGGCGCAGGAGCTGGTAGAGGGGCGCGCCATTCCTGGATTCTACGGGGATATCAGCATGAACGGGTACCGCATCACTAACTTAGCGGACCCAACCAACGCCCAAGATGCAGCGACAAAAGGCTACGTCGATAGTGGGGATATGGAGCTGCAGCAGCAGATAACCAGCAGCTTTAATCGTTCACTGCGTGTTCCTGATTCTTCAATTAACCAGCTACCGTCGGCCCAAGACCGCGCCTGGAAAAGTCTGGGTTTTGACGGTGTTGGTCAGCCTACATTGCAGGACCCTGCGGGGACGGGGTTATGGGGATACGTTCCTACCACAGGTTCGTTTGAGCAGGGCGCGCGACTCACTCAACGTTTTGAGGTTCTTCTGTGGGAATCCACAAACGAATACTGGCGCTGGGATGGCGCAATGCCTAAGGATATTTTACCGGATAGCACGCCAGCGACCGCCGGTGGAACGGGACCGGGTAAGTGGGTCGATGTCACCGATGCAACCCTCCGCGGAAATCTGGCTTCGAGTGCAGTGGGCTTAGGTATTGGGCTTGTCAACACCGTTTATGGTGAAATGGCAGACAGAATACTGCGACGTATCTACGGATTTAACGTTTGTGCCTATGGCGCCAGAAGCATCGGCGAAGACGGGTATGAGGATTTTGACAGCCGGGTAGCTATTCAGAGCGCTATTGATGCTGCTCACTCGGCGTGGCTGGCAACTGGTAGCGTTCAGAACGTCTTCTTCCCATCAGGTAGTACGTTTCTGGTGTCTTCAGTACCGGCGGTAATGGAGTCAGGGGTTACTAGTGGTCTGTGGTGTCTGCGCATGCGCTCCGGGGTTCGTCTGGCAGGTGGTGGGACGATAAAGCTGGCGGCCAATGCTTTTGCTGCGGATACTACCCTGTTCAGGATGATTGGCAGTGATAGTGGTGGAACAACCCGCCCCACCGATGTACATTTTGAAGGGGTTACACTGGATGGCAACCTTGAAAACCAGGTCGCCAACTCAAACGCGCACGGTATCTGGGTGTACACACTCGGTAACTCGTCTATTACCAAATGTAAGTTCCATGATATCGCGGGTTGTGGGGGTAGTCTGCGCGGTATGATAGAAACCCCGGCGAAAAATATTGAGGTGACAGGAAACCGGGCCACCAACTGTGGCAACATAGGATTACAGGTTTCCTGGTTCGATGGGTTGATAGTGACCGGGAACATTGTCAGGGACTGTACAGATAACGGTATAGATATTTACGGCAACTCTGGTGCGTCAGGACAACCGACCGGCCTCAATTTCTCCGTAAGTGACAACTTCGTATATAATTGCCTGACCGGGTTATTCATTGAGACTGTTGCTAACGGCGCAGTAACAGGGAACACCCTGCAAGGGAATACGCAAAACATACAGGTTAACCGTATTAACAGTCAGCCGCGTAATATCACTATTGCAGGTAACACTATTGCCGACGGTGTTTATGGCATTCGTGTTCAGGGCGATATGCGTGGGGTTGAGATTACTGGAAACACCATTCGCGGCTATTCAAGCTCGGCTTTTCGACTTGGAAATACGAGTGGCGGGAACGTTTCATATGTTAACATCCGCAATAATACCATCATCCCAACAGTGGCAACCTCTTATGTTGTCTGGATTGGCGGTGGTACGGCCTCCCGTATAACTGTTAAACATAATACTGTAGAAAACAGTATTGGGTTAACTGCGGAATATCTGTATCACAATGAAGCAGCAACCAACGTCCAGGTTACAGTAGGTGCCTGGAAATTTTGGGGTGGCTCCCTGTCTGATACCGGTGTCGAATCCTATAGTGAGGGGACGTTTTCACCCATAGTGTCAGGCGGAACCACTGGCGGAACAGGTACGTATACCAACCAGTACGGTAAATACACAAAGATTGGTAACATTGTGCATTTCACTTTGTCAGTGGCGTGGTCTGCTCATACTGGAGCTGGTGCCATTCTGGTTGGCAACCTGCCGTTTGCGGCCTCATCCGATAACAATCAGACAATCAACGCAGCCATTAGTTCGGTTTCAGCAGCCACCACGTCAGCGCGACTATTCATGAGAAACGTCAACGGCTCCACCGTCGCGCAGATGGTATTTTTTGATGGTGCTGCGGCTAACTCCTACCCGCAGATAAATAGCGCCGGCGGGTATGTGCAGGTGAGCGGTTTTTATTTTGTGTCGTGA

Title	Authors	Date	PMID	Source
Isolation of novel Extended-spectrum beta-lactamases producing Klebsiella pneumoniae ST 147 phage RMN1	Safitri,N.A., Mardiana,M., Maladan,Y., Balqis,S.A., Rahmatika,I., Setiawan,R., Priadi,C.R., Rukmana,A., Safari,D., Saharman,Y.R. and Sarassari,R.	2026	—	GenBank

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Literature