Protein

View in Explore
Genbank accession
YP_009620697.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,57
Seq2Symm
C1 confidence 0,353 truncated
C1 0,353
I 0,070
C3 0,008
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MNTSVKTKEQVLFVYVKNPLQPAESRVCVSNDHEKNRSLADYLGAIEGRWAVSVSGKLIEQEDWEQTYLQANDCVVVAPLIEGGGGGGGKTVLRLVAIIALTVVSAGAGAAFGAAAGGALGVSAAAGTALVSAGVMMAGTMAINALLPPATPKAPASGSDYDSSPTYGIDGPKNMSSRGIPVPVVYGESWFAGNFLQSYVDNVGDDQYLNLLINLGEGPVEGITEIMINNQPMNNFSNVETWFRNGTEHQTMIPYFGDIIVPVNRNLDLQPGVYSLHTVADAVDRLRVDIVMPGGVNRADDEDGLVPFTALFTLELREVGGAWGPFVEGASTGQVAIGGKQMSALRRSYYSRTLDRSKRYEVRAIHNQSTDDTNVSNRVSLTDVNYITFDDLTYKHTALFGMRIKLSDQLSGIPSVQYRLKGRKVPVYSPLTGAYDETFTSNPAWIALDVLMHKRYGGGISASRIKMEYFRQWATFCDQNNLKFNGAIDQRTNLWDALAPICKVGRAQIIRAGTRFQVSMVRKQKPVQMFSMGNIKKGSLSIDWLAMDERANECHVSYYDKNDGGKQKTVIVPNMAARERGEEAKPTELTLYGVDNVEQATREGTLAMNMQQLLKTISFEAPISAIACTLGDVVAIQHDVPDWGQGGLTDAGSTKNVLVVDKPVTQDLGGTYVVRVRHDKVLQGTWEVDELIGNIVVPTGPFNIQMFERYRRLFVPGTGQDFQIQEPIIDQYGRHGLRLNSTAGLKKGDTIQLFDTDVLETRFVGAVSPDGLRITPTQAFSAIPGRETPWAFGLNGTEVMMMTIMDISGKDDLWKTIGGIEYSDAAYDDTVVDYPPDPTNTNPVMPNITFNGFKERRYLVGAAYTSDVEMTWSCTDIAYAYAEVHINIDGEGWKFMDANATFYQLTAINSGSIQLKLVPVTIEGFKPNFNAVPVHTYTVEGGVPRNPDPPLNFRVGTVTNDIIELLWGDLNAWSAAQNVYAYEIWHAEGQGAVLESAQLIAVTKNDHYPHVGLLKNSWHTYWIRTINVTAKNAKSAFIPAAGLSVQCKDNDPYGLIDLTDLAPSLRESINAPKVLEDLSQIIANAATKLEETDDAQKQEVFNRKQAVGEVAASVNEQVAAIADETEAMAARITQMEATTTPGTQAKIDELAQVVANGDSTLAQRISLMQVKFADDLSAAIAQEQTVRADAISALASQVTTLTSTVGENTASLQETMEVVDGISAQYTLRVDINGIVSGFGIATGEGGVSEFAIMASRFKIYGPGPGDTVVKTAVFNVDAETGVAYLRNAVVGNLQSDNYISGVSGWCLKK
Physico‐chemical
properties
protein length:1310 AA
molecular weight: 142181,92420 Da
isoelectric point:4,94598
aromaticity:0,08092
hydropathy:-0,14359

Domains

View on InterPro
Domain architecture
YP_009620697.1
1 1310 aa
ATT 272–388 · ATT 489–642 · RBD 1216–1310
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009620697.1
1 1310 aa
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,9126
Central domain 110 308 200 0,1223
C-terminal 309 1310 1001 0,0713
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Pseudomonas phage nickie [NCBI] · taxon 2048977
Uroviricota Caudoviricetes Nickievirus Nickievirus nickie
Host
Pseudomonas syringae pv. avii [NCBI] · taxon 663959
Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas syringae

Coding sequence (CDS)

Genbank protein accession
YP_009620697.1 [NCBI]
Genbank nucleotide accession
NC_042091.1 [NCBI]
CDS location
range 22625 -> 26557
strand +
CDS
ATGAATACGTCGGTTAAGACCAAAGAGCAGGTTCTCTTTGTCTATGTGAAGAACCCTCTGCAACCAGCAGAGAGCCGAGTCTGCGTCTCCAACGATCACGAAAAGAACCGTTCGCTGGCCGACTACCTGGGCGCCATCGAAGGGCGCTGGGCTGTGTCCGTCTCGGGCAAGCTGATCGAGCAGGAAGACTGGGAGCAGACCTACCTGCAAGCGAATGACTGCGTGGTCGTCGCGCCCCTGATTGAAGGTGGTGGCGGCGGTGGCGGCAAGACCGTACTCCGCCTGGTAGCGATCATCGCCCTGACCGTAGTATCCGCTGGTGCCGGTGCTGCTTTCGGTGCTGCTGCTGGTGGCGCCCTGGGTGTCTCTGCTGCCGCTGGTACTGCTCTGGTGTCCGCAGGTGTCATGATGGCAGGTACGATGGCGATCAACGCCCTGCTGCCGCCTGCGACCCCGAAAGCACCTGCATCCGGTTCCGACTACGACTCCAGCCCAACCTACGGCATCGACGGCCCGAAGAACATGAGTTCTCGGGGCATCCCTGTGCCTGTCGTTTACGGTGAGTCCTGGTTCGCAGGTAACTTCCTTCAGTCCTACGTCGATAACGTGGGCGATGACCAGTACCTGAACCTGCTGATCAACCTTGGTGAAGGCCCTGTTGAGGGCATCACCGAAATCATGATCAACAACCAGCCGATGAACAACTTCTCGAACGTCGAGACGTGGTTCCGCAACGGCACCGAACATCAGACGATGATCCCGTACTTCGGCGACATCATCGTGCCGGTCAACCGCAACCTCGATCTGCAACCCGGCGTCTACTCGCTGCACACCGTTGCAGACGCTGTTGACCGCCTGCGTGTGGACATCGTTATGCCAGGCGGTGTGAACCGCGCTGACGACGAAGACGGCTTGGTTCCGTTCACCGCTCTCTTCACGCTTGAGTTGCGTGAGGTAGGTGGCGCATGGGGTCCGTTCGTTGAGGGCGCAAGCACCGGTCAGGTCGCTATTGGTGGCAAGCAGATGTCTGCCCTGCGCCGCAGCTACTACAGCCGTACCCTGGACCGCAGCAAGCGCTACGAAGTTCGAGCGATCCACAACCAGTCCACTGACGACACCAACGTCAGCAACCGGGTGAGCCTGACCGACGTCAACTACATCACCTTCGACGACCTGACCTACAAGCACACCGCTCTGTTCGGTATGCGGATCAAGCTGTCTGACCAGCTCAGCGGCATTCCATCGGTTCAGTACCGTCTGAAGGGCCGCAAGGTGCCGGTGTACAGTCCTCTGACTGGCGCATACGACGAGACCTTCACGTCGAACCCGGCGTGGATTGCTCTCGACGTTCTGATGCACAAGCGCTACGGCGGCGGCATCAGTGCATCCCGCATCAAGATGGAATACTTCCGTCAGTGGGCGACGTTCTGCGACCAGAACAACCTGAAGTTCAACGGCGCAATCGACCAGCGCACCAACCTGTGGGACGCCCTGGCGCCAATCTGCAAGGTAGGCCGTGCTCAGATCATTCGTGCCGGCACCCGCTTCCAGGTGTCGATGGTCCGCAAGCAGAAGCCCGTCCAGATGTTCTCGATGGGCAACATCAAGAAGGGCTCCCTGTCGATTGACTGGCTGGCAATGGACGAGCGCGCCAACGAATGTCACGTCAGCTACTACGACAAGAACGACGGCGGCAAGCAGAAGACGGTCATCGTGCCGAACATGGCCGCCCGTGAGCGCGGTGAAGAGGCGAAGCCAACCGAGTTGACTCTGTACGGCGTGGATAACGTCGAGCAGGCGACCCGTGAAGGCACGCTCGCCATGAACATGCAGCAGTTGCTGAAGACCATCAGCTTCGAGGCTCCAATCTCGGCAATCGCCTGTACCCTGGGTGACGTGGTCGCAATCCAGCATGACGTTCCAGACTGGGGTCAGGGCGGCCTGACTGACGCCGGCAGCACCAAGAACGTCCTGGTGGTCGACAAGCCTGTCACTCAAGACCTGGGCGGCACCTACGTGGTTCGTGTTCGTCACGACAAGGTTCTGCAAGGCACTTGGGAAGTAGACGAGCTGATCGGCAACATCGTCGTGCCAACTGGCCCGTTCAATATCCAGATGTTCGAGCGCTACCGTCGTCTGTTCGTCCCAGGCACTGGGCAGGACTTCCAGATTCAAGAGCCGATCATCGACCAGTACGGCCGGCACGGTCTGCGCTTGAACAGCACTGCTGGTCTGAAGAAGGGCGACACCATTCAGCTCTTCGACACCGACGTGCTTGAGACGCGCTTCGTGGGCGCTGTGAGCCCCGATGGGCTGCGTATCACCCCAACACAAGCATTCAGCGCTATCCCGGGTCGTGAGACGCCCTGGGCGTTCGGTCTGAACGGCACCGAAGTCATGATGATGACCATCATGGACATCAGCGGTAAGGATGATCTGTGGAAGACCATCGGTGGTATCGAGTACAGCGATGCAGCCTACGACGACACCGTTGTGGACTACCCGCCTGACCCGACCAACACCAACCCGGTCATGCCGAACATCACGTTCAATGGGTTCAAAGAGCGCCGCTACCTGGTGGGCGCCGCGTACACCTCCGACGTCGAAATGACCTGGAGCTGCACTGACATTGCCTACGCCTACGCCGAAGTCCACATCAACATCGACGGTGAAGGCTGGAAGTTCATGGACGCGAACGCGACCTTCTACCAGTTGACCGCGATCAACAGTGGGTCGATTCAGCTCAAGCTGGTGCCGGTGACCATCGAAGGGTTCAAGCCGAACTTCAACGCTGTGCCGGTTCACACCTACACCGTAGAGGGCGGTGTACCGCGGAACCCTGATCCACCCCTGAACTTCCGGGTTGGGACTGTCACCAACGACATCATCGAACTGCTGTGGGGCGACCTGAACGCCTGGTCTGCTGCTCAGAACGTGTACGCCTACGAAATCTGGCATGCTGAAGGTCAGGGCGCTGTTCTGGAATCGGCCCAACTGATCGCCGTGACCAAGAACGACCACTACCCTCACGTTGGTCTGCTGAAGAACTCCTGGCACACCTACTGGATTCGGACGATCAACGTCACCGCGAAGAACGCGAAGTCTGCATTCATCCCGGCCGCCGGTCTGTCGGTGCAGTGCAAGGACAACGACCCATACGGGCTGATCGACCTCACTGACCTGGCCCCGAGCCTGCGTGAGAGCATCAACGCGCCGAAGGTTCTCGAAGACCTGTCGCAGATCATTGCCAACGCCGCGACCAAGCTCGAAGAGACCGATGACGCTCAGAAGCAGGAGGTGTTCAACCGTAAGCAGGCTGTCGGTGAAGTAGCCGCATCCGTCAACGAGCAGGTAGCAGCAATCGCGGATGAGACCGAAGCGATGGCAGCCCGGATCACTCAGATGGAAGCGACCACCACGCCGGGCACCCAGGCGAAGATCGACGAGCTGGCTCAGGTGGTAGCAAACGGTGACTCCACTCTGGCTCAGCGTATCTCGCTGATGCAGGTGAAGTTCGCTGACGACCTGTCTGCCGCAATCGCCCAAGAGCAGACTGTCCGTGCTGACGCAATCAGCGCGCTGGCCAGTCAGGTGACCACGCTGACCTCGACCGTCGGTGAGAACACTGCAAGCCTGCAAGAGACGATGGAGGTTGTTGACGGTATCTCCGCGCAGTACACGCTGCGGGTAGACATCAACGGGATCGTCTCGGGCTTCGGTATCGCAACCGGTGAAGGTGGTGTGTCCGAGTTCGCGATCATGGCCAGCCGGTTCAAGATTTACGGCCCAGGCCCGGGTGATACGGTGGTGAAGACTGCGGTGTTCAACGTGGATGCTGAGACTGGTGTCGCATACCTCCGCAACGCGGTGGTGGGCAACCTTCAGTCCGACAACTACATTTCTGGCGTGTCGGGGTGGTGCCTAAAAAAGTAG

Genome Context

Tertiary structure

YP_009620697.1
ESMFold structure
Source ESMFold
pLDDT 73.2
Oligomeric state monomer
Download structure