Protein

View in Explore
Genbank accession
YP_009620697.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,71
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MNTSVKTKEQVLFVYVKNPLQPAESRVCVSNDHEKNRSLADYLGAIEGRWAVSVSGKLIEQEDWEQTYLQANDCVVVAPLIEGGGGGGGKTVLRLVAIIALTVVSAGAGAAFGAAAGGALGVSAAAGTALVSAGVMMAGTMAINALLPPATPKAPASGSDYDSSPTYGIDGPKNMSSRGIPVPVVYGESWFAGNFLQSYVDNVGDDQYLNLLINLGEGPVEGITEIMINNQPMNNFSNVETWFRNGTEHQTMIPYFGDIIVPVNRNLDLQPGVYSLHTVADAVDRLRVDIVMPGGVNRADDEDGLVPFTALFTLELREVGGAWGPFVEGASTGQVAIGGKQMSALRRSYYSRTLDRSKRYEVRAIHNQSTDDTNVSNRVSLTDVNYITFDDLTYKHTALFGMRIKLSDQLSGIPSVQYRLKGRKVPVYSPLTGAYDETFTSNPAWIALDVLMHKRYGGGISASRIKMEYFRQWATFCDQNNLKFNGAIDQRTNLWDALAPICKVGRAQIIRAGTRFQVSMVRKQKPVQMFSMGNIKKGSLSIDWLAMDERANECHVSYYDKNDGGKQKTVIVPNMAARERGEEAKPTELTLYGVDNVEQATREGTLAMNMQQLLKTISFEAPISAIACTLGDVVAIQHDVPDWGQGGLTDAGSTKNVLVVDKPVTQDLGGTYVVRVRHDKVLQGTWEVDELIGNIVVPTGPFNIQMFERYRRLFVPGTGQDFQIQEPIIDQYGRHGLRLNSTAGLKKGDTIQLFDTDVLETRFVGAVSPDGLRITPTQAFSAIPGRETPWAFGLNGTEVMMMTIMDISGKDDLWKTIGGIEYSDAAYDDTVVDYPPDPTNTNPVMPNITFNGFKERRYLVGAAYTSDVEMTWSCTDIAYAYAEVHINIDGEGWKFMDANATFYQLTAINSGSIQLKLVPVTIEGFKPNFNAVPVHTYTVEGGVPRNPDPPLNFRVGTVTNDIIELLWGDLNAWSAAQNVYAYEIWHAEGQGAVLESAQLIAVTKNDHYPHVGLLKNSWHTYWIRTINVTAKNAKSAFIPAAGLSVQCKDNDPYGLIDLTDLAPSLRESINAPKVLEDLSQIIANAATKLEETDDAQKQEVFNRKQAVGEVAASVNEQVAAIADETEAMAARITQMEATTTPGTQAKIDELAQVVANGDSTLAQRISLMQVKFADDLSAAIAQEQTVRADAISALASQVTTLTSTVGENTASLQETMEVVDGISAQYTLRVDINGIVSGFGIATGEGGVSEFAIMASRFKIYGPGPGDTVVKTAVFNVDAETGVAYLRNAVVGNLQSDNYISGVSGWCLKK
Physico‐chemical
properties
protein length:1310 AA
molecular weight: 142181,92420 Da
isoelectric point:4,94598
aromaticity:0,08092
hydropathy:-0,14359

Domains

Domains [InterPro]
DC_1181
STR
2–939
DC_1181 Coil IPR015406
IPR053171
Unmapped
206–675
IPR053171 DC_1281
IPR055385
ATT
272–388
IPR055385 IPR032876
NF040662
Unmapped
282–678
NF040662
YP_009620697.1
1 1310
Architecture
STR
ATT
STR
ATT
STR
RBD
STR 2-271 | ATT 272-388 | STR 389-488 | ATT 489-642 | STR 643-939 | RBD 940-1310
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009620697.1
1 1310
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,9126
Central domain 110 308 200 0,1223
C-terminal 309 1310 1001 0,0713
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-109
Central
110-308
C-terminal
309-1310

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage nickie
[NCBI] 		2048977 Uroviricota > Caudoviricetes > Nickievirus >
Host Pseudomonas syringae pv. avii
[NCBI] 		663959 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas > Pseudomonas syringae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009620697.1 [NCBI]
Genbank nucleotide accession
NC_042091.1 [NCBI]
CDS location
range 22625 -> 26557
strand +
CDS
ATGAATACGTCGGTTAAGACCAAAGAGCAGGTTCTCTTTGTCTATGTGAAGAACCCTCTGCAACCAGCAGAGAGCCGAGTCTGCGTCTCCAACGATCACGAAAAGAACCGTTCGCTGGCCGACTACCTGGGCGCCATCGAAGGGCGCTGGGCTGTGTCCGTCTCGGGCAAGCTGATCGAGCAGGAAGACTGGGAGCAGACCTACCTGCAAGCGAATGACTGCGTGGTCGTCGCGCCCCTGATTGAAGGTGGTGGCGGCGGTGGCGGCAAGACCGTACTCCGCCTGGTAGCGATCATCGCCCTGACCGTAGTATCCGCTGGTGCCGGTGCTGCTTTCGGTGCTGCTGCTGGTGGCGCCCTGGGTGTCTCTGCTGCCGCTGGTACTGCTCTGGTGTCCGCAGGTGTCATGATGGCAGGTACGATGGCGATCAACGCCCTGCTGCCGCCTGCGACCCCGAAAGCACCTGCATCCGGTTCCGACTACGACTCCAGCCCAACCTACGGCATCGACGGCCCGAAGAACATGAGTTCTCGGGGCATCCCTGTGCCTGTCGTTTACGGTGAGTCCTGGTTCGCAGGTAACTTCCTTCAGTCCTACGTCGATAACGTGGGCGATGACCAGTACCTGAACCTGCTGATCAACCTTGGTGAAGGCCCTGTTGAGGGCATCACCGAAATCATGATCAACAACCAGCCGATGAACAACTTCTCGAACGTCGAGACGTGGTTCCGCAACGGCACCGAACATCAGACGATGATCCCGTACTTCGGCGACATCATCGTGCCGGTCAACCGCAACCTCGATCTGCAACCCGGCGTCTACTCGCTGCACACCGTTGCAGACGCTGTTGACCGCCTGCGTGTGGACATCGTTATGCCAGGCGGTGTGAACCGCGCTGACGACGAAGACGGCTTGGTTCCGTTCACCGCTCTCTTCACGCTTGAGTTGCGTGAGGTAGGTGGCGCATGGGGTCCGTTCGTTGAGGGCGCAAGCACCGGTCAGGTCGCTATTGGTGGCAAGCAGATGTCTGCCCTGCGCCGCAGCTACTACAGCCGTACCCTGGACCGCAGCAAGCGCTACGAAGTTCGAGCGATCCACAACCAGTCCACTGACGACACCAACGTCAGCAACCGGGTGAGCCTGACCGACGTCAACTACATCACCTTCGACGACCTGACCTACAAGCACACCGCTCTGTTCGGTATGCGGATCAAGCTGTCTGACCAGCTCAGCGGCATTCCATCGGTTCAGTACCGTCTGAAGGGCCGCAAGGTGCCGGTGTACAGTCCTCTGACTGGCGCATACGACGAGACCTTCACGTCGAACCCGGCGTGGATTGCTCTCGACGTTCTGATGCACAAGCGCTACGGCGGCGGCATCAGTGCATCCCGCATCAAGATGGAATACTTCCGTCAGTGGGCGACGTTCTGCGACCAGAACAACCTGAAGTTCAACGGCGCAATCGACCAGCGCACCAACCTGTGGGACGCCCTGGCGCCAATCTGCAAGGTAGGCCGTGCTCAGATCATTCGTGCCGGCACCCGCTTCCAGGTGTCGATGGTCCGCAAGCAGAAGCCCGTCCAGATGTTCTCGATGGGCAACATCAAGAAGGGCTCCCTGTCGATTGACTGGCTGGCAATGGACGAGCGCGCCAACGAATGTCACGTCAGCTACTACGACAAGAACGACGGCGGCAAGCAGAAGACGGTCATCGTGCCGAACATGGCCGCCCGTGAGCGCGGTGAAGAGGCGAAGCCAACCGAGTTGACTCTGTACGGCGTGGATAACGTCGAGCAGGCGACCCGTGAAGGCACGCTCGCCATGAACATGCAGCAGTTGCTGAAGACCATCAGCTTCGAGGCTCCAATCTCGGCAATCGCCTGTACCCTGGGTGACGTGGTCGCAATCCAGCATGACGTTCCAGACTGGGGTCAGGGCGGCCTGACTGACGCCGGCAGCACCAAGAACGTCCTGGTGGTCGACAAGCCTGTCACTCAAGACCTGGGCGGCACCTACGTGGTTCGTGTTCGTCACGACAAGGTTCTGCAAGGCACTTGGGAAGTAGACGAGCTGATCGGCAACATCGTCGTGCCAACTGGCCCGTTCAATATCCAGATGTTCGAGCGCTACCGTCGTCTGTTCGTCCCAGGCACTGGGCAGGACTTCCAGATTCAAGAGCCGATCATCGACCAGTACGGCCGGCACGGTCTGCGCTTGAACAGCACTGCTGGTCTGAAGAAGGGCGACACCATTCAGCTCTTCGACACCGACGTGCTTGAGACGCGCTTCGTGGGCGCTGTGAGCCCCGATGGGCTGCGTATCACCCCAACACAAGCATTCAGCGCTATCCCGGGTCGTGAGACGCCCTGGGCGTTCGGTCTGAACGGCACCGAAGTCATGATGATGACCATCATGGACATCAGCGGTAAGGATGATCTGTGGAAGACCATCGGTGGTATCGAGTACAGCGATGCAGCCTACGACGACACCGTTGTGGACTACCCGCCTGACCCGACCAACACCAACCCGGTCATGCCGAACATCACGTTCAATGGGTTCAAAGAGCGCCGCTACCTGGTGGGCGCCGCGTACACCTCCGACGTCGAAATGACCTGGAGCTGCACTGACATTGCCTACGCCTACGCCGAAGTCCACATCAACATCGACGGTGAAGGCTGGAAGTTCATGGACGCGAACGCGACCTTCTACCAGTTGACCGCGATCAACAGTGGGTCGATTCAGCTCAAGCTGGTGCCGGTGACCATCGAAGGGTTCAAGCCGAACTTCAACGCTGTGCCGGTTCACACCTACACCGTAGAGGGCGGTGTACCGCGGAACCCTGATCCACCCCTGAACTTCCGGGTTGGGACTGTCACCAACGACATCATCGAACTGCTGTGGGGCGACCTGAACGCCTGGTCTGCTGCTCAGAACGTGTACGCCTACGAAATCTGGCATGCTGAAGGTCAGGGCGCTGTTCTGGAATCGGCCCAACTGATCGCCGTGACCAAGAACGACCACTACCCTCACGTTGGTCTGCTGAAGAACTCCTGGCACACCTACTGGATTCGGACGATCAACGTCACCGCGAAGAACGCGAAGTCTGCATTCATCCCGGCCGCCGGTCTGTCGGTGCAGTGCAAGGACAACGACCCATACGGGCTGATCGACCTCACTGACCTGGCCCCGAGCCTGCGTGAGAGCATCAACGCGCCGAAGGTTCTCGAAGACCTGTCGCAGATCATTGCCAACGCCGCGACCAAGCTCGAAGAGACCGATGACGCTCAGAAGCAGGAGGTGTTCAACCGTAAGCAGGCTGTCGGTGAAGTAGCCGCATCCGTCAACGAGCAGGTAGCAGCAATCGCGGATGAGACCGAAGCGATGGCAGCCCGGATCACTCAGATGGAAGCGACCACCACGCCGGGCACCCAGGCGAAGATCGACGAGCTGGCTCAGGTGGTAGCAAACGGTGACTCCACTCTGGCTCAGCGTATCTCGCTGATGCAGGTGAAGTTCGCTGACGACCTGTCTGCCGCAATCGCCCAAGAGCAGACTGTCCGTGCTGACGCAATCAGCGCGCTGGCCAGTCAGGTGACCACGCTGACCTCGACCGTCGGTGAGAACACTGCAAGCCTGCAAGAGACGATGGAGGTTGTTGACGGTATCTCCGCGCAGTACACGCTGCGGGTAGACATCAACGGGATCGTCTCGGGCTTCGGTATCGCAACCGGTGAAGGTGGTGTGTCCGAGTTCGCGATCATGGCCAGCCGGTTCAAGATTTACGGCCCAGGCCCGGGTGATACGGTGGTGAAGACTGCGGTGTTCAACGTGGATGCTGAGACTGGTGTCGCATACCTCCGCAACGCGGTGGTGGGCAACCTTCAGTCCGACAACTACATTTCTGGCGTGTCGGGGTGGTGCCTAAAAAAGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
fc0ba48c37daff7a1b8258964abde02f3652e88b2cc8ce22c9827524116b31c4
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7320
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50