Phage RBP Database

Genbank accession

XNS39348.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,75

TF

Evidence RBPdetect2

Probability 0,98

Seq2Symm

C3 confidence 0,455 truncated

C3	0,455
C7-C9	0,011
C1	0,007

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSSGGGKAKTPTLINDNLYHKQFYRVLDIISEGPIYGPVNTKAPLNSVMLNDTPVTDANGNTSIPGVSVAWRNGTLDQSPINGFSAIESTVIVNAQVKHDTPIIRTVSDPNVTRVRLNIGVDSLVQSDEQSNQHNTSVMMMIDVKPSSSSTWTLVKDVTIGPGKISGEYLEAHIINAPDEKPFDIRVRRVTADSTSDLLRNDTRWSSYSEIIDDNLSYPHTAVAGAVIDHDQYTDTPTRTYHLRGLIVDVPDNYDPETRTYSGLWLGGLKQAYTNNPAWIFRYLVKNERFGLARHAGYIDVDDGALYTLSQYCDQLVDDGYGGLEPRMTLNAYITEQMSARDLLDNIAGMFRGIALWDGQRLTVMIDAPQDPIATITNANVVDGAFTRSSIARAECYNAVIVSWTDPENGWEQSKEYVADDELIARDGYNETTLEAFGCTSRGQAYRAGKWLIETAKREPSKFTFKMARDAIHFTPGDIIEILDNNRAGARLGGRIVANNGKVITVDKVDAKYIAAGDTISLLDSDGKFKKHQITGVSGNKITLAAAPSWIRNGTVFAVSTEVAKPVLCRITSVAETENNSVYTIEAAQHDPNKQAIVDEGAIFEVNNDTLNHFRVPNIENLKVVNIGSETIQCRATWETQTTTHRMTFEIRIYNADGAVVKSYETTKYSYDFYGIDAGVYSLGVRGRNDTGMKGAESIVDLVIGAPAAPVGVNWVPGVFQATVYPISKTTLTTDTAYEFYYAGENQITDPAKITTAAQFTGRGYQWTFGGMNTGHTYYVYVRTRNAFGVSDFVEASGQPTENFDEISDYVTKDVLNSDQFKEMVSDIKDLGDRADIIESATEDLKTATDDLKTATDNLKTDTDALKKDTEDLYKKVEENADEIGKHEVRIDSLEVSSENVDNELAQTKASLQNASLALINNSLAQTNTRVTLTAQYKKGRGETKAQIDRIDNVIADEKQATAEALETITAEMNTMDSNIKGEIARVDKAIANETQARTEAISNVNASISTLEGSTTASVNRLDQAIADESAARAQAISGVNASISTLDSKVTSNITRIDKAIADETQARTEAISGVNASISTLDSKVTSNVTRIDKAIADETKARTDAISSLNSSLTSTINSKVSEVSTALSTHETSSAEKFSQISASFEAVNSSITEWSQTMTTADEALSTKIDQLTVTVNGNTTAIETTSKALTDFKGNVDASWSIKIATDNNGKKYATGMSLGLTGSGTNVQSQCIFLVDRFVLMTAANGTYQTPFYVTNGAMYVREAFIKDASIGTAKIADAAITTAKIAQQIQSTNYKAGSAGWMINKNGSAELNNVTVRGAVYANSGKFKGSLEATSFVGDVASTNFIPQASFPNQSGSASRSVTKTYTDSSSSSLSKTVFVMIPYHLTYYQYSQSTSIKVTIDINGNKKTYSVVRAASTPQFGFTVSHCVAGITAQKVTIKITEEYTNTSTGAERRAGLALVTRSSGSWA

Physico‐chemical properties

protein length:	1478 AA
molecular weight:	160344,32150 Da
isoelectric point:	5,06068
aromaticity:	0,07375
hydropathy:	-0,32727

Domain architecture

XNS39348.1

1 1478 aa

ATT 88–214 · ATT 335–496 · STR 609–707 · ATT 709–811 · RBD 1188–1335 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171

IPR055385
ATT

IPR055385 IPR032876 IPR055383 IPR057587 Coil IPR015406

XNS39348.1

11478 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0129
STR

DC_0129 DC_2097

DC_1904
RBD

DC_1904

XNS39348.1

11478 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	1	1350	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	88	214	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	335	496	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR055383	STR	DC_0003	609	707	InterPro cluster	Tip attachment protein J, Fn3-1 domain	Central	High	Text match	998 proteins / 1603 hits
IPR057587	ATT	DC_0130	709	811	InterPro cluster	Tip attachment protein J, second Ig-like domain	Central	Medium	Text match	309 proteins / 309 hits
Coil	Unmapped	-	838	858	Coils	Coil	-	-	-	-
IPR015406	RBD	DC_0135	1188	1335	InterPro cluster	Tip attachment protein J, central straight fiber domain	C-terminal	High	Text match	1265 proteins / 1266 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XNS39348.1

1 1478 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	494	494	0,7286
Central domain	495	1293	800	0,0815
C-terminal	1294	1478	184	0,7548

Note: Constraints were applied during segmentation.
Fixed 17 C-terminal predictions appearing before Central domain|Sequence started with non-N-terminal domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage MagusPhagus [NCBI] · taxon 3233703

Escherichia phage MagusPhagus

Host

Escherichia coli [NCBI] · taxon 562

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli

Genbank protein accession

XNS39348.1 [NCBI]

Genbank nucleotide accession

PP925836.1 [NCBI]

CDS location

range 13169 -> 17605
strand -

CDS

ATGAGTAGCGGCGGCGGCAAAGCAAAAACACCAACATTGATAAATGACAACCTGTATCATAAACAGTTTTATCGTGTACTGGATATTATTTCAGAAGGTCCGATTTATGGACCTGTGAATACGAAAGCGCCATTAAACAGCGTTATGCTTAATGACACCCCTGTAACTGACGCGAACGGCAATACCAGTATCCCTGGCGTTAGCGTGGCGTGGCGCAATGGTACTCTAGATCAATCACCTATTAACGGTTTTAGCGCCATCGAATCAACCGTTATTGTTAACGCTCAGGTGAAACACGATACTCCAATAATCAGGACTGTATCAGATCCTAACGTTACGCGCGTGCGCCTGAATATCGGCGTCGATTCACTTGTACAATCTGACGAGCAAAGCAATCAACATAATACATCTGTCATGATGATGATTGACGTGAAGCCTTCGTCTTCTTCTACGTGGACGCTTGTTAAAGACGTCACTATAGGTCCGGGTAAGATCAGCGGAGAATATCTTGAAGCGCATATTATCAACGCGCCGGATGAAAAACCGTTTGATATTCGCGTTCGCCGCGTAACGGCTGATAGCACAAGCGATCTATTGCGAAATGATACGCGATGGAGTAGCTACAGCGAAATAATCGACGATAATTTATCTTATCCTCACACCGCTGTAGCAGGCGCGGTAATTGACCACGACCAGTACACCGACACGCCTACACGCACTTATCACCTGCGTGGTCTTATTGTCGACGTGCCTGATAACTACGACCCGGAAACGCGCACTTATTCCGGTTTATGGCTTGGCGGCTTGAAACAGGCTTACACTAATAACCCTGCGTGGATCTTCCGTTACCTGGTTAAAAACGAGCGTTTCGGCCTTGCCCGTCATGCTGGCTATATTGACGTTGATGACGGCGCACTGTATACGCTTTCTCAATACTGCGACCAGTTGGTTGATGATGGCTACGGCGGCCTTGAGCCTCGCATGACGCTTAACGCTTACATCACAGAGCAAATGAGCGCCCGCGACTTACTGGACAATATCGCCGGGATGTTCAGGGGTATCGCGTTATGGGACGGGCAACGCCTTACCGTGATGATTGATGCACCACAAGACCCGATCGCCACCATTACAAATGCAAATGTCGTTGATGGCGCGTTTACTCGTTCAAGTATCGCCCGCGCAGAATGCTACAACGCCGTGATTGTGTCATGGACAGACCCGGAAAACGGCTGGGAGCAATCCAAAGAGTATGTAGCAGATGATGAGCTAATCGCCCGTGATGGTTACAACGAAACCACGTTGGAGGCGTTCGGGTGCACGTCACGCGGGCAAGCGTACCGCGCGGGCAAATGGCTGATAGAAACAGCAAAACGCGAGCCGTCAAAATTCACGTTTAAAATGGCCCGTGACGCGATTCACTTTACGCCAGGGGATATCATCGAGATCCTCGATAATAACCGCGCTGGCGCTCGCTTAGGCGGTCGCATCGTTGCGAACAACGGCAAAGTAATAACTGTAGACAAGGTTGATGCTAAATATATTGCCGCTGGGGATACAATCAGCCTTCTTGATAGCGATGGCAAGTTTAAAAAACATCAGATCACCGGGGTGAGCGGAAACAAAATCACACTGGCGGCGGCCCCGTCATGGATTAGAAACGGCACTGTTTTTGCTGTATCGACTGAAGTGGCAAAACCCGTTTTGTGCCGGATCACCAGTGTAGCAGAAACAGAAAATAACAGCGTATACACTATCGAAGCCGCACAGCACGACCCTAACAAACAAGCGATAGTCGATGAAGGCGCAATCTTTGAGGTCAACAATGATACGCTTAATCATTTCCGCGTGCCGAACATTGAAAATCTGAAGGTGGTAAACATTGGATCGGAAACAATTCAATGCCGCGCCACATGGGAAACACAGACAACCACGCATCGTATGACATTTGAGATCCGCATATATAATGCAGATGGTGCGGTGGTTAAAAGCTATGAAACCACGAAATACAGTTATGATTTTTATGGCATTGACGCTGGCGTGTATTCTTTAGGGGTTCGCGGAAGAAATGATACTGGCATGAAGGGTGCCGAAAGTATCGTTGACCTTGTTATCGGTGCGCCAGCAGCGCCAGTAGGCGTTAACTGGGTTCCAGGTGTATTTCAGGCTACAGTGTACCCGATAAGCAAGACAACGCTAACAACTGATACAGCGTACGAATTCTACTATGCAGGGGAAAACCAGATCACAGATCCGGCAAAAATAACCACGGCGGCACAGTTTACCGGGCGCGGGTATCAGTGGACTTTCGGCGGCATGAATACGGGCCACACTTATTACGTTTATGTGCGCACACGTAATGCTTTTGGTGTTTCTGACTTCGTAGAAGCATCAGGACAGCCAACAGAAAACTTCGATGAAATCAGCGATTATGTCACTAAAGACGTGCTGAATTCAGACCAGTTCAAGGAAATGGTAAGCGACATTAAGGATCTTGGCGACCGCGCAGACATTATCGAAAGTGCAACTGAAGACCTTAAAACAGCTACAGACGACCTTAAAACAGCTACAGACAACCTTAAAACAGACACAGACGCGCTTAAAAAAGACACTGAAGACCTTTATAAAAAAGTCGAAGAAAACGCCGATGAAATAGGCAAACATGAGGTAAGAATAGACTCATTAGAGGTATCAAGCGAAAACGTCGATAACGAACTGGCACAGACAAAAGCAAGCCTACAAAACGCATCGCTTGCGCTCATCAATAATTCGCTTGCTCAAACTAATACGCGCGTCACTCTTACCGCTCAATACAAGAAAGGGCGCGGTGAGACTAAAGCGCAAATCGACCGTATAGACAATGTTATTGCTGACGAAAAACAGGCAACAGCAGAAGCGCTTGAAACTATCACCGCAGAGATGAACACGATGGACTCAAACATCAAAGGCGAGATAGCGCGAGTAGACAAAGCTATTGCAAACGAAACACAGGCAAGAACTGAAGCCATTAGCAATGTTAACGCCAGCATAAGCACATTGGAAGGCAGCACAACAGCCAGCGTTAATCGTCTTGATCAGGCAATAGCTGACGAGTCCGCCGCGCGTGCTCAAGCAATTAGCGGAGTGAACGCCAGCATCAGCACGCTTGATTCTAAAGTAACAAGCAACATTACGCGTATAGATAAAGCAATTGCTGACGAAACGCAGGCAAGAACGGAAGCAATAAGCGGAGTGAATGCAAGCATCAGCACGCTTGATAGCAAGGTTACAAGCAATGTGACCCGTATCGACAAAGCTATTGCAGATGAGACAAAGGCCCGCACAGATGCAATAAGTAGTCTTAACTCATCGCTTACCAGTACGATTAATTCGAAAGTATCTGAAGTGTCAACAGCACTTTCTACGCATGAAACATCAAGCGCGGAAAAATTCAGCCAGATCTCAGCGTCTTTCGAAGCTGTAAACTCAAGCATCACGGAATGGTCGCAGACCATGACAACTGCGGACGAGGCATTATCAACCAAAATTGATCAGCTTACAGTAACAGTTAACGGGAACACCACGGCGATCGAGACGACATCGAAAGCGTTAACTGACTTCAAAGGTAACGTTGATGCGTCATGGTCAATCAAGATTGCCACCGACAACAACGGCAAAAAATACGCAACAGGCATGTCTCTTGGCCTGACTGGTAGCGGGACTAACGTTCAATCGCAGTGTATTTTCCTTGTTGACCGCTTCGTGTTAATGACCGCCGCAAACGGCACATATCAAACGCCTTTCTATGTCACCAATGGTGCAATGTATGTGCGCGAAGCGTTTATTAAAGACGCATCAATAGGGACAGCTAAAATTGCAGATGCAGCAATCACTACAGCTAAAATTGCACAGCAAATACAGTCAACCAACTATAAAGCCGGTTCGGCTGGCTGGATGATTAATAAAAACGGTAGCGCGGAGCTTAACAACGTAACGGTAAGGGGGGCGGTGTATGCAAATAGCGGTAAATTTAAAGGGTCGCTAGAGGCTACAAGTTTTGTAGGCGATGTCGCGTCAACTAACTTTATACCTCAAGCATCATTCCCTAACCAGTCGGGCAGTGCATCGCGTTCTGTTACTAAAACTTATACAGATTCGTCTTCGAGTTCGCTTTCTAAAACCGTTTTTGTGATGATTCCTTATCACCTGACTTACTATCAATATTCTCAATCAACATCCATAAAAGTAACAATTGATATTAATGGCAATAAGAAAACATATTCAGTAGTAAGGGCTGCATCAACGCCTCAATTCGGATTTACGGTATCCCATTGTGTCGCAGGGATCACGGCGCAAAAAGTGACTATAAAAATAACGGAAGAATACACTAACACCAGCACAGGCGCAGAAAGAAGGGCGGGTCTTGCGCTTGTTACGAGAAGCTCAGGATCATGGGCATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)