Phage RBP Database

Genbank accession

AKI86598.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TF

Evidence RBPdetect

Probability 0,89

TF

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,967

C3	0,967
C1	0,424
C6	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSVVVSGTLKSPDGEAISGANITLTALTVSPDALSGTSASAVTREGGYYGMTMDPGEYAVSVTVKGKTAVYGRVRIEGTESTVTLNMLLRRSLVEVSIPGELLTDFRQIQNNVADDLATIRRLNEDTATKNTQATQSKESAAASAKSASDSAKTATSRAAEAGQKATDATEAATRAVTAAGNAEESSTRAGESEKAAGADAEKARQHAEKARLAQESAGEILKRAEAATVSAEEARRMAENARGPRGPQGETGPKGDVGPKGETGPVGPQGPAGPKGERGDVGAQGAVGPAGPRGEKGEQGERGPQGIPGLKGDTGERGPKGDQGDMGPKGEKGDPGGPAGPQGPKGERGEAGPQGPMGARGERGETGPRGEPGPAGPRGERGETGPQGPRGEPGPAGSAANVADATTAQKGIVQLSSATDSDDETKAATPKAVKAAMDVANEAKTKAEEAAAGGGVPGPKGDKGDTGPAGPAGPKGDKGERGDTGPVGATGERGPAGDAGPAGPQGPKGDRGERGETGLTGNAGPQGPKGDTGAAGPAGPQGPKGETGAAGPVGATGPQGPKGDPGETQIRFRLGPGNIIETNSHGWFPDTDGALITGLTFLDPKDATRVQGFFQHLQVRFGDGPWQDVKGLDEVGSDTGRTGE

Physico‐chemical properties

protein length:	645 AA
molecular weight:	63954,92270 Da
isoelectric point:	5,16089
aromaticity:	0,02016
hydropathy:	-0,79690

Domain architecture

AKI86598.1

1 645 aa

ATT 5–93 · STR 244–302 · STR 340–396 · STR 407–448 · STR 456–514 · RBD 571–634 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR008969
ATT

IPR008969 Coil IPR008160 IPR008160 IPR005068 IPR008160 IPR009640

PF13620
ENZ

PF13620 IPR050149 IPR009640

G3DSA:2.60.40.1120
STR

G3DSA:2.60.40.1120

AKI86598.1

1645 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1608
STR

DC_1608

DC_1453
STR

DC_1453

AKI86598.1

1645 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR008969	ATT	IPR008969	5	93	Merged direct domain	Carboxypeptidase-like, regulatory domain superfamily	N-terminal	Low	Positional only	16 proteins / 16 hits
PF13620	ENZ	DC_0734	5	86	InterPro cluster	Carboxypeptidase regulatory-like domain	C-terminal	High	Text match	4 proteins / 4 hits
G3DSA:2.60.40.1120	STR	G3DSA:2.60.40.1120	5	98	Merged direct domain	G3DSA:2.60.40.1120	Central	Low	Positional only	6 proteins / 6 hits
Coil	Unmapped	-	222	242	Coils	Coil	-	-	-	-
IPR008160	STR	DC_0536	244	302	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR050149	Unmapped	-	244	568	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	340	396	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR005068	STR	DC_0738	407	448	InterPro cluster	Bacteriophage lambda, Tail fiber protein, repeat-2	Central	High	Text match	217 proteins / 347 hits
IPR008160	STR	DC_0536	456	514	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
IPR009640	RBD	DC_0593	571	634	InterPro cluster	Bacteriophage 933W, L0121, tail fibre, C-terminal	C-terminal	Low	Positional only	120 proteins / 125 hits
IPR009640	RBD	DC_0593	575	634	InterPro cluster	Bacteriophage 933W, L0121, tail fibre, C-terminal	C-terminal	Low	Positional only	120 proteins / 125 hits

Proteins with similar domain architecture

Phage

Escherichia phage PA21 [NCBI] · taxon 1660366

Uroviricota Caudoviricetes Traversvirus Traversvirus II

Host

Escherichia coli [NCBI] · taxon 562

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli

No CDS data available.

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)