Phage RBP Database

Genbank accession

ALM64024.1 [GenBank]

Protein name

receptor binding protein

RBP type

TF

Evidence RBPdetect

Probability 0,69

TF

Evidence RBPdetect2

Probability 0,36

Seq2Symm

C3 confidence 0,659

C3	0,659
C1	0,008
C2	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MTIKYFTFFSPNNTEFPVGSNNDAKLYMMLTGMDYGTIRRKDWSAPVNTALNVQYTNTSIIAGGRYFELVGETIPLKANSVNYIHANIDLTQTTSPVKLSAETLNNSNRTDINNSSGVLKVLIDIRTTNGLGVISSEIPKQITTLDELATKTANIEDLTVKGDIKGWTSVSMQNVASATLQYKKINGAICLRGSGNWGAFKANSTKVVGSLPPEVRPTDNTQFEMTTQRANNNNKPMELQIDTNGTINVWSYSAGSGNYGGVVGTYFQ

Physico‐chemical properties

protein length:	268 AA
molecular weight:	29219,50160 Da
isoelectric point:	8,51152
aromaticity:	0,08209
hydropathy:	-0,32687

Domain architecture

ALM64024.1

1 268 aa

STR 1–139 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.60.520.10
STR

G3DSA:2.60.520.10

G3DSA:2.60.520.10
STR

G3DSA:2.60.520.10

IPR048780
RBD

IPR048780

SSF141658
STR

SSF141658

ALM64024.1

1268 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0707
RBD

DC_0707

ALM64024.1

1268 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.60.520.10	STR	G3DSA:2.60.520.10	1	139	Merged direct domain	G3DSA:2.60.520.10	Central	Low	Positional only	29 proteins / 29 hits
G3DSA:2.60.520.10	STR	G3DSA:2.60.520.10	1	135	Merged direct domain	G3DSA:2.60.520.10	Central	Low	Positional only	29 proteins / 29 hits
IPR048780	RBD	DC_0780	2	137	InterPro cluster	Receptor-binding protein, N-terminal shoulder domain	Central	High	Text match	33 proteins / 33 hits
SSF141658	STR	SSF141658	2	139	Merged direct domain	SSF141658	Central	Low	Positional only	13 proteins / 13 hits

Proteins with similar domain architecture

Phage

Lactococcus phage 936 group phage Phi109 [NCBI] · taxon 1636556

Uroviricota Caudoviricetes Skunavirus Skunavirus sv109

Host

Lactococcus lactis [NCBI] · taxon 1358

Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis

Genbank protein accession

ALM64024.1 [NCBI]

Genbank nucleotide accession

KP793121 [NCBI]

CDS location

range 16796 -> 17602
strand +

CDS

ATGACAATTAAATACTTTACATTCTTTAGTCCAAACAATACAGAGTTTCCAGTCGGTTCTAATAATGACGCAAAGTTATATATGATGTTGACTGGAATGGACTATGGAACAATCAGGCGCAAAGATTGGTCAGCGCCAGTAAACACAGCCCTAAATGTACAATATACCAATACTTCAATTATTGCTGGAGGTAGATATTTTGAACTAGTGGGTGAGACGATACCTCTAAAGGCTAATTCTGTCAATTATATCCATGCAAATATTGACTTAACTCAAACTACTAGTCCTGTAAAGTTATCAGCTGAAACCTTAAACAATAGCAACAGAACCGATATAAATAATAGTTCTGGTGTCCTAAAGGTTTTGATTGATATCAGAACGACTAATGGTTTAGGGGTAATCAGTTCTGAAATACCAAAACAAATAACTACATTGGACGAATTAGCAACAAAGACAGCTAATATTGAAGACTTGACAGTCAAAGGAGATATCAAGGGCTGGACTAGCGTTTCAATGCAAAACGTAGCTAGTGCAACTCTTCAATATAAAAAAATTAACGGTGCCATTTGTTTACGTGGTTCAGGAAACTGGGGTGCCTTTAAAGCAAATTCTACAAAAGTTGTCGGAAGTTTGCCACCAGAAGTAAGACCAACTGATAACACTCAATTTGAAATGACAACACAACGTGCAAATAACAACAATAAACCAATGGAACTACAAATAGATACTAACGGTACGATAAACGTATGGAGTTACTCTGCTGGTTCAGGTAACTATGGCGGTGTCGTAGGGACATATTTCCAATAG

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)