Protein

View in Explore
Genbank accession
XRL22094.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,94
TF
Evidence Phold
Probability 1,00
Protein sequence
MVDTCNINGVCGTGDWNGPKPGDPNMNDLLLKATPAFGGIDIEFTWPTTNPGAVGTTRLFRSTDANFAGATIRAFVNGNFYFDKTDPGSKVDQRYYYWIQLVSINGTDGDIIGPATATARPLIEQMIEQLTGEIDNGLLSQELRKEIAQIELNKLGITQEEIERAKNDDALGVRLTQIDAKMDQNTAILQEEVRARVTADSSLVQTVNTMYADFNGNIAAIQQENTVLATKVNALASSVTTINATVNGDSASGKVGLVAEVQTLDGKVTQIGARWTATVDVNGLVGGFGVYNDGRTVEAGFNVDRFWIGRPGTPKNPGSYPFIIDNNIVYIKEAAIQKLTFDKLRAQDGSFIVQNGKIQADYIEAKDIVVNNIQSDNYQPGVQGWAFRPNGIMEINGTAGTGRMTINNATIKVFDQAGKLRVHIGNLQA
Physico‐chemical
properties
protein length:429 AA
molecular weight: 46389,50500 Da
isoelectric point:4,80400
aromaticity:0,07459
hydropathy:-0,24103

Domains

Domains [InterPro]
IPR013783
31–112
IPR013783 Coil IPR015406
IPR053171
150–413
IPR053171
XRL22094.1
1 429
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Ps1.JH
[NCBI] 		3415513 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRL22094.1 [NCBI]
Genbank nucleotide accession
PV469326.1 [NCBI]
CDS location
range 8937 -> 10226
strand -
CDS
ATGGTAGACACTTGCAACATCAATGGGGTCTGCGGAACTGGGGACTGGAATGGTCCTAAGCCCGGTGACCCCAACATGAATGACCTACTGCTGAAGGCAACTCCTGCCTTCGGTGGTATCGACATTGAATTCACTTGGCCGACCACAAACCCAGGAGCAGTGGGTACTACTCGACTGTTCCGTAGCACTGATGCGAACTTCGCTGGTGCAACTATCCGTGCCTTCGTCAACGGTAACTTCTACTTCGACAAGACAGACCCTGGCTCCAAGGTAGATCAACGCTACTACTATTGGATTCAGTTGGTTTCGATCAATGGCACTGATGGGGACATCATTGGTCCAGCCACAGCTACTGCTCGTCCACTCATCGAGCAGATGATTGAGCAGCTTACTGGTGAGATCGACAATGGGCTGTTGTCTCAAGAGCTTCGCAAAGAGATCGCTCAGATCGAACTGAACAAACTGGGGATCACCCAGGAAGAGATTGAACGAGCCAAGAACGACGATGCTCTCGGTGTTCGTCTTACTCAGATCGATGCGAAGATGGATCAGAATACTGCCATCTTGCAGGAAGAGGTTCGTGCTCGTGTGACTGCTGACAGTTCTCTGGTTCAGACAGTCAACACTATGTACGCAGACTTCAACGGTAACATTGCAGCAATCCAGCAAGAGAACACTGTGCTGGCTACCAAGGTGAATGCCTTGGCTTCGTCTGTGACCACCATCAACGCCACGGTCAACGGTGACTCGGCCTCTGGTAAGGTTGGCTTGGTTGCCGAGGTACAGACCCTGGACGGCAAGGTCACCCAGATCGGTGCCCGCTGGACTGCGACTGTTGATGTGAATGGTTTGGTTGGTGGCTTCGGTGTCTACAACGATGGTCGTACTGTTGAAGCTGGCTTCAACGTAGACCGCTTCTGGATCGGTCGTCCTGGCACTCCGAAGAACCCAGGCAGCTACCCGTTCATCATCGACAACAACATCGTCTACATCAAGGAAGCTGCCATCCAGAAGTTGACCTTCGATAAGCTCAGGGCACAGGATGGCAGCTTCATTGTTCAGAACGGTAAGATCCAGGCTGACTACATCGAAGCCAAGGATATCGTGGTGAACAACATCCAGTCGGACAACTACCAACCAGGTGTCCAAGGCTGGGCATTCCGTCCGAATGGGATCATGGAAATCAACGGTACGGCAGGCACTGGCCGTATGACTATCAACAACGCCACCATCAAGGTGTTTGACCAAGCAGGCAAACTCCGGGTGCACATTGGGAACTTGCAAGCATGA

Tertiary structure

PDB ID
6a7b2cc6c2fa85ae9ce5f25657c31eb91602dfba75c40eb920f370d87ad55ee1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7823
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Ps1.JH, a novel bacteriophage, effectively controls Pseudomonas aeruginosa of diabetic foot ulcer origin Akram,S., Haider,Z., Shahbaz Aslam,M., ur Rehman,S. and Abbas,Z. 2017-01 — GenBank