Protein

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UniProt accession
A0A0N7CD87 [UniProt]
Protein name
Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 0,90
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSVKQPNISPLFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVVYDIATQTSYGLPTIPVGSVISSVSGGKLNYNPGDVQVNLLPLPNSAALLRAELGSPTGTNLVNFKNSAVGALVRSVTSKLEDNPISVKDYGCKGDGVTDDTAGLQLAVAGALSGLAIYFPKGIYLTSLPLNFTKPVTLIGEKGARIELTGGDHDYVIQFDFRDTDLMYWGYEAYMSNIIVDGKGFAKDGFSLRGVISSRFDNLRATNISRAGLHCWWTQCNLYNNFHCSKNVELFTTTPNMEY
Physico‐chemical
properties
protein length:289 AA
molecular weight: 31310,13220 Da
isoelectric point:5,65152
aromaticity:0,08997
hydropathy:-0,06159

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
1–88
G3DSA:3.30.2020.50 IPR012334
DC_1178
STR
8–286
DC_1178
IPR011050
STR
124–274
IPR011050
IPR024535
ENZ
131–191
IPR024535
A0A0N7CD87
1 289
Architecture
ATT
STR
ATT 1-88 | STR 89-287 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
A0A0N7CD87
1 289
Domain Start End Length (AA) Confidence
N-terminal 1 147 147 0,9837
Central domain 148 278 132 0,9930
C-terminal 279 289 10 0,2270
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-147
Central
148-278
C-terminal
279-289

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 38
[NCBI] 		1654891 Uroviricota > Caudoviricetes > Pantevenvirales > Cvivirinae > Kuttervirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)

No CDS data available.

Genome Context

Genome Context

Gene Ontology

Description Category Evidence (source)
GO:0044423 virion component Cellular Component IEA:UniProtKB-KW (UniProt)
GO:0051701 biological process involved in interaction with host Biological Process IEA:UniProtKB-ARBA (UniProt)
GO:0019058 viral life cycle Biological Process IEA:UniProtKB-ARBA (UniProt)

Tertiary structure

PDB ID
53bd2fdfcc9fedb0e5e8a020484ac96067507d89ceb4429086d33013eebb32c7
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8253
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50