Phage RBP Database

UniProt accession

A0A0N7CD87 [UniProt]

Protein name

Rhamnogalacturonase A/B/Epimerase-like pectate lyase domain-containing protein

RBP type

TSP

Evidence DepoScope

Probability 0,90

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,96

Seq2Symm

C3 confidence 0,993

C3	0,993
D3	0,128
C1	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSVKQPNISPLFDRSIQEIARSANVKDSEVIVSTDTISLLDGKKVVYDIATQTSYGLPTIPVGSVISSVSGGKLNYNPGDVQVNLLPLPNSAALLRAELGSPTGTNLVNFKNSAVGALVRSVTSKLEDNPISVKDYGCKGDGVTDDTAGLQLAVAGALSGLAIYFPKGIYLTSLPLNFTKPVTLIGEKGARIELTGGDHDYVIQFDFRDTDLMYWGYEAYMSNIIVDGKGFAKDGFSLRGVISSRFDNLRATNISRAGLHCWWTQCNLYNNFHCSKNVELFTTTPNMEY

Physico‐chemical properties

protein length:	289 AA
molecular weight:	31310,13220 Da
isoelectric point:	5,65152
aromaticity:	0,08997
hydropathy:	-0,06159

Domain architecture

A0A0N7CD87

1 289 aa

ATT 1–88 · STR 92–287 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:3.30.2020.50
ATT

G3DSA:3.30.2020.50 IPR012334

IPR011050
STR

IPR011050

IPR024535
ENZ

IPR024535

A0A0N7CD87

1289 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1178
STR

DC_1178

A0A0N7CD87

1289 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:3.30.2020.50	ATT	G3DSA:3.30.2020.50	1	88	Merged direct domain	G3DSA:3.30.2020.50	N-terminal	Low	Positional only	289 proteins / 289 hits
IPR012334	STR	IPR012334	92	287	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	124	274	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR024535	ENZ	DC_0410	131	191	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

A0A0N7CD87

1 289 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	147	147	0,9837
Central domain	148	278	132	0,9930
C-terminal	279	289	10	0,2270

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage 38 [NCBI] · taxon 1654891

Uroviricota Caudoviricetes Pantevenvirales Ackermannviridae Kuttervirus Kuttervirus kv38

Host

Salmonella enterica subsp. enterica serovar Typhi [NCBI] · taxon 90370

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

No CDS data available.

	Description	Category	Evidence (source)
GO:0044423	virion component	Cellular Component	IEA:UniProtKB-KW (UniProt)
GO:0051701	biological process involved in interaction with host	Biological Process	IEA:UniProtKB-ARBA (UniProt)
GO:0019058	viral life cycle	Biological Process	IEA:UniProtKB-ARBA (UniProt)

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Gene Ontology

Tertiary structure

Predicted Aligned Error (PAE)