Protein

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Genbank accession
YP_010246351.1 [GenBank]
Protein name
exonuclease
RBP type
TSP
Evidence DepoScope
Probability 1,00
Seq2Symm
C2 confidence 0,658
C2 0,658
C1 0,080
C6 0,003
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MGVLAALLSQPTAADPPPVRETITTVEEAGNYSRTFIDHEPPETREELYRMLEVPRGYSIVGDITYRNRELVNGSTVSAYNYKLRELPQPLDFDGLAERVLKSPPANPINQPGPYWFVFQAGDLQLGKIARDGSTEQIVETYMQSVRAAVVEYESLADEFGVSGVQLSFPGDCMEGVVSQGGRNIWLTQETITEQTRIFRRLLLWTVDQFAPIANHVYVDVVNGNHDEANRQVNTKPGDGWATECAIALSDAMALNPGAYGHVEVRVPDSWCGHMTVPVGDSLVTVAHGHQWRRGKGMGWWAEQALNLQSPTTSGVLQHGHIHTYEIETTRDRTRISSPTFDTGSDWFREIHGGDSKLGGLVYLLRSNEISRVSLV
Physico‐chemical
properties
protein length:376 AA
molecular weight: 41736,21250 Da
isoelectric point:5,12019
aromaticity:0,08511
hydropathy:-0,35213

Domains

View on InterPro
Domain architecture
YP_010246351.1
1 376 aa
STR 168–341 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_010246351.1
1 376 aa
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,1540
Central domain 133 331 200 0,0066
C-terminal 332 376 44 0,9961
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Gordonia phage Octobien14 [NCBI] · taxon 2483673
Uroviricota Caudoviricetes Octobienvirus Octobienvirus octobien14
Host
Gordonia terrae [NCBI] · taxon 2055
Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia terrae

Coding sequence (CDS)

Genbank protein accession
YP_010246351.1 [NCBI]
Genbank nucleotide accession
NC_060134 [NCBI]
CDS location
range 62219 -> 63349
strand +
CDS
ATGGGCGTATTGGCAGCGCTGCTTAGTCAACCGACGGCCGCAGATCCGCCACCCGTGCGGGAAACGATTACCACGGTTGAAGAGGCCGGGAACTATTCCCGAACCTTTATCGACCACGAGCCTCCCGAAACACGGGAAGAGCTGTATCGAATGTTGGAGGTTCCCCGTGGGTATTCCATTGTGGGTGACATCACTTATCGCAACCGTGAGCTTGTTAACGGCAGCACTGTATCCGCCTACAACTACAAGCTCCGCGAGCTACCCCAACCCCTGGACTTCGACGGCCTTGCCGAACGGGTCCTAAAGTCCCCGCCCGCTAACCCAATCAATCAGCCGGGTCCATACTGGTTTGTCTTCCAGGCCGGTGACTTGCAGCTCGGGAAGATTGCCCGCGACGGGTCTACTGAGCAGATCGTGGAAACGTACATGCAGTCCGTTCGGGCTGCTGTGGTCGAGTATGAGAGCTTGGCCGACGAGTTCGGCGTTTCTGGCGTCCAGTTGTCCTTCCCTGGCGATTGCATGGAAGGTGTGGTGTCCCAGGGTGGGCGGAACATTTGGCTCACTCAGGAGACGATCACGGAGCAAACGCGGATCTTCCGGCGTCTGCTGCTGTGGACGGTCGACCAGTTCGCTCCGATCGCTAACCACGTGTACGTCGATGTGGTCAACGGCAACCACGATGAAGCTAACCGGCAGGTGAACACTAAGCCTGGCGATGGTTGGGCTACCGAGTGCGCTATCGCCTTGTCGGATGCGATGGCCCTTAACCCTGGCGCTTACGGGCATGTTGAGGTCCGGGTGCCGGATTCCTGGTGCGGGCATATGACTGTGCCGGTCGGGGATTCTCTGGTCACGGTGGCTCACGGTCACCAGTGGCGGCGCGGTAAGGGTATGGGTTGGTGGGCTGAGCAAGCCCTTAACTTGCAGTCCCCGACTACTTCGGGTGTTTTGCAGCACGGACATATTCACACCTACGAGATCGAGACTACGCGCGACCGCACTCGGATCTCGTCCCCCACATTCGACACCGGCTCCGATTGGTTTAGGGAGATTCACGGTGGCGATTCTAAGTTGGGCGGTTTGGTGTACCTGTTGCGGTCTAACGAAATTTCGAGAGTGAGTTTGGTATGA

Genome Context

Tertiary structure

YP_010246351.1
ESMFold structure
Source ESMFold
pLDDT 81.4
Oligomeric state monomer
Download structure