Protein

View in Explore
Genbank accession
YP_008126340.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MADQGLLGQSKPAGTTNTLLYGAPIDSSASAVLTIANDGTGAAYDVAIKDYDQKLTVDASTYKLHEGDVITGYRFALGTAIDTNSTLVPGNTITSADGEKTAKFESFYIPAYTEIDVKDVSIRAITVESVSGTFAVGDTLTKGTSPNNTDALVYAVVQSESNTIIHIGPSTLNGTGTEFADGDSVSTAGGASATVSTGGVGSANNEFVFSTDGSTFNLYLGTALTAFKDRTYRFDVSDSSMSGRDFSLSTTINGEWGPDNTAGTGDDGAEYTTGRTASGTAGSGGAYVEYDFSADANLGATLYVYDGGTGTAANANYGGTDRFLTMSTDFAYDEIYVYDIAGTWVNSSDSFTAGGTSFTLTGQTSEPYGYVRSYSGTTLTVIKGSGSADFAGSDTFQDSPKIGTATRATVTVSSVDVATTAVEAANYITLNKSNSANNVDRITSLVIGPGERLIVESATQNNVFTLIGFEDASTALTVRNFTTSAGGGE
Physico‐chemical
properties
protein length:489 AA
molecular weight: 50342,82540 Da
isoelectric point:4,13659
aromaticity:0,09407
hydropathy:-0,14642

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-IOM18
[NCBI] 		754039 Uroviricota > Caudoviricetes > Pantevenvirales > Tefnutvirus > Tefnutvirus siom18
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008126340.1 [NCBI]
Genbank nucleotide accession
NC_021536.1 [NCBI]
CDS location
range 12297 -> 13766
strand +
CDS
ATGGCAGACCAAGGACTTTTAGGGCAATCAAAACCCGCAGGAACTACAAATACATTGCTATATGGAGCACCTATTGATTCATCTGCTAGTGCGGTTCTGACAATCGCAAATGATGGAACTGGTGCTGCATATGATGTGGCAATCAAAGATTATGACCAAAAGTTAACTGTAGATGCATCAACTTATAAATTGCATGAAGGTGATGTAATTACTGGTTATCGTTTTGCTTTGGGTACTGCTATTGATACGAACTCAACTTTAGTTCCTGGTAATACGATCACATCTGCTGATGGAGAAAAGACAGCAAAGTTTGAGTCTTTTTATATTCCAGCATATACTGAGATTGATGTAAAGGATGTTTCGATTCGTGCAATCACGGTTGAATCTGTTAGTGGTACATTTGCTGTTGGCGATACCCTTACTAAAGGAACTTCTCCAAATAATACTGACGCTCTGGTTTATGCTGTCGTTCAAAGCGAATCTAATACTATTATTCATATCGGTCCTTCTACTTTGAATGGTACTGGTACAGAATTTGCTGATGGTGATTCTGTAAGTACAGCAGGTGGTGCTAGCGCAACGGTTTCTACTGGTGGTGTTGGTTCTGCTAATAATGAATTTGTATTTTCTACTGATGGAAGTACTTTTAATTTATATCTTGGCACTGCATTAACTGCTTTCAAAGATAGAACTTATCGTTTTGATGTTTCCGATTCTTCTATGAGTGGTAGAGACTTCAGTCTCTCTACGACAATTAATGGTGAGTGGGGTCCAGATAACACTGCTGGAACTGGTGATGATGGCGCAGAGTATACTACAGGTAGAACTGCAAGTGGTACAGCAGGTTCTGGTGGTGCTTATGTTGAATATGATTTCTCGGCAGATGCAAACTTAGGTGCTACACTATATGTTTATGATGGTGGTACAGGAACCGCTGCAAATGCAAACTATGGTGGCACTGATCGTTTTCTCACAATGAGCACAGATTTTGCTTATGATGAAATTTATGTTTACGATATTGCTGGAACTTGGGTAAATAGCAGCGATAGTTTTACCGCAGGTGGTACATCTTTTACTTTAACTGGTCAAACCTCTGAACCATATGGTTATGTTCGTTCATATAGTGGAACAACCCTCACTGTAATCAAGGGTTCTGGTTCTGCTGATTTTGCTGGATCAGATACTTTCCAAGATTCTCCTAAGATTGGCACTGCAACTCGTGCTACTGTGACTGTAAGCAGTGTAGATGTTGCTACAACAGCAGTAGAAGCAGCAAATTATATTACTCTGAACAAGAGCAATAGTGCAAATAATGTTGATAGAATCACTTCTCTTGTCATTGGTCCTGGAGAAAGATTGATTGTTGAAAGTGCAACTCAAAACAATGTGTTTACTCTTATTGGATTTGAAGATGCTTCTACTGCCTTAACTGTTAGAAACTTCACTACCTCCGCTGGCGGTGGTGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7745010a16f160e7395a0866d66428e2a7e0f3a0fdcae2f70de0f2c04141ebad
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4432
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank