Protein

View in Explore
Genbank accession
YP_008126340.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Seq2Symm
C1 confidence 0,913
C1 0,913
I 0,163
H 0,003
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MADQGLLGQSKPAGTTNTLLYGAPIDSSASAVLTIANDGTGAAYDVAIKDYDQKLTVDASTYKLHEGDVITGYRFALGTAIDTNSTLVPGNTITSADGEKTAKFESFYIPAYTEIDVKDVSIRAITVESVSGTFAVGDTLTKGTSPNNTDALVYAVVQSESNTIIHIGPSTLNGTGTEFADGDSVSTAGGASATVSTGGVGSANNEFVFSTDGSTFNLYLGTALTAFKDRTYRFDVSDSSMSGRDFSLSTTINGEWGPDNTAGTGDDGAEYTTGRTASGTAGSGGAYVEYDFSADANLGATLYVYDGGTGTAANANYGGTDRFLTMSTDFAYDEIYVYDIAGTWVNSSDSFTAGGTSFTLTGQTSEPYGYVRSYSGTTLTVIKGSGSADFAGSDTFQDSPKIGTATRATVTVSSVDVATTAVEAANYITLNKSNSANNVDRITSLVIGPGERLIVESATQNNVFTLIGFEDASTALTVRNFTTSAGGGE
Physico‐chemical
properties
protein length:489 AA
molecular weight: 50342,82540 Da
isoelectric point:4,13659
aromaticity:0,09407
hydropathy:-0,14642

Taxonomy

Phage
Synechococcus phage S-IOM18 [NCBI] · taxon 754039
Uroviricota Caudoviricetes Pantevenvirales Kyanoviridae Tefnutvirus Tefnutvirus siom18
Host
Synechococcus sp. WH 7803 [NCBI] · taxon 32051
Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus Synechococcus sp. WH 7803

Coding sequence (CDS)

Genbank protein accession
YP_008126340.1 [NCBI]
Genbank nucleotide accession
NC_021536.1 [NCBI]
CDS location
range 12297 -> 13766
strand +
CDS
ATGGCAGACCAAGGACTTTTAGGGCAATCAAAACCCGCAGGAACTACAAATACATTGCTATATGGAGCACCTATTGATTCATCTGCTAGTGCGGTTCTGACAATCGCAAATGATGGAACTGGTGCTGCATATGATGTGGCAATCAAAGATTATGACCAAAAGTTAACTGTAGATGCATCAACTTATAAATTGCATGAAGGTGATGTAATTACTGGTTATCGTTTTGCTTTGGGTACTGCTATTGATACGAACTCAACTTTAGTTCCTGGTAATACGATCACATCTGCTGATGGAGAAAAGACAGCAAAGTTTGAGTCTTTTTATATTCCAGCATATACTGAGATTGATGTAAAGGATGTTTCGATTCGTGCAATCACGGTTGAATCTGTTAGTGGTACATTTGCTGTTGGCGATACCCTTACTAAAGGAACTTCTCCAAATAATACTGACGCTCTGGTTTATGCTGTCGTTCAAAGCGAATCTAATACTATTATTCATATCGGTCCTTCTACTTTGAATGGTACTGGTACAGAATTTGCTGATGGTGATTCTGTAAGTACAGCAGGTGGTGCTAGCGCAACGGTTTCTACTGGTGGTGTTGGTTCTGCTAATAATGAATTTGTATTTTCTACTGATGGAAGTACTTTTAATTTATATCTTGGCACTGCATTAACTGCTTTCAAAGATAGAACTTATCGTTTTGATGTTTCCGATTCTTCTATGAGTGGTAGAGACTTCAGTCTCTCTACGACAATTAATGGTGAGTGGGGTCCAGATAACACTGCTGGAACTGGTGATGATGGCGCAGAGTATACTACAGGTAGAACTGCAAGTGGTACAGCAGGTTCTGGTGGTGCTTATGTTGAATATGATTTCTCGGCAGATGCAAACTTAGGTGCTACACTATATGTTTATGATGGTGGTACAGGAACCGCTGCAAATGCAAACTATGGTGGCACTGATCGTTTTCTCACAATGAGCACAGATTTTGCTTATGATGAAATTTATGTTTACGATATTGCTGGAACTTGGGTAAATAGCAGCGATAGTTTTACCGCAGGTGGTACATCTTTTACTTTAACTGGTCAAACCTCTGAACCATATGGTTATGTTCGTTCATATAGTGGAACAACCCTCACTGTAATCAAGGGTTCTGGTTCTGCTGATTTTGCTGGATCAGATACTTTCCAAGATTCTCCTAAGATTGGCACTGCAACTCGTGCTACTGTGACTGTAAGCAGTGTAGATGTTGCTACAACAGCAGTAGAAGCAGCAAATTATATTACTCTGAACAAGAGCAATAGTGCAAATAATGTTGATAGAATCACTTCTCTTGTCATTGGTCCTGGAGAAAGATTGATTGTTGAAAGTGCAACTCAAAACAATGTGTTTACTCTTATTGGATTTGAAGATGCTTCTACTGCCTTAACTGTTAGAAACTTCACTACCTCCGCTGGCGGTGGTGAGTGA

Genome Context

Tertiary structure

YP_008126340.1
ESMFold structure
Source ESMFold
pLDDT 44.3
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-IOM18 Henn,M.R., Clokie,M., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank