Protein

View in Explore
Genbank accession
YP_009618729.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MAEYKLSELNSIDTVRSEDLLHLRIIKRSDMLGDEDRKMTYANFLASFKLERFLQLTGGDMTGNLGIVKLRYGGKDLLDPTGSSEVILGDTAKTFRINASALRLTVNDATRSATVYHTLNKPSPNELGMRTNTENDARYAMKETENTFLARQIININGVGLTLKSILPDGGAYIEARDSNNALRFTVGNLTSGTDVTLVNSKGATLTLGTNSVSVDKNFEINGQVQPNNWNNLDARFFTQTAADQRFARLNASNNFVGVNNFNGKTYVIADSNALNLRAATENAALFMRGYNSAGTGAWYVGQPDGTQSEVVLANQMTNVNLKIATEFSFNKAINVTGQVKPSDFANFDTRYVPSSLTNVLARTNAANVFTNPQTIVTTDAAFTLQSGTANSSLYIVGANADGNRRWYVGNGEGSRPNSLFLYNYSSGGVQLEIAETFMFNRSVSVSGQVQPTDWTNFDSRYYTQSAANSRYMLSGVSGTGTEVGDATGIAWNSKTGLYSVTNSTGGSTHLVYQMHLGVGTSTPTAQFKFNYKNTGIYYRTARDGFGFEEVWAKIYTDQDKPTPSELGAYTKAEVDQRIASAVTDSTDLKKVYPVGIVTFFASNVNPNTAFPGTTWTYLTEGANRTIRIGSANGSDVKGLGGADTVALSVGHIPAHTHSFSGTTSTFDYGTKYTDAQGAHDHDRGNMEISGDFGFFRSDANSFYTASGAFAISGSQASRGYTGSQFTYGTPVNFYASRTWTGRTSWVGAHGHGVGIGAHNHTFSGNTGATGSGAAFSVLNTYIKLMAWVRTA
Physico‐chemical
properties
protein length:792 AA
molecular weight: 85454,35660 Da
isoelectric point:7,24177
aromaticity:0,10606
hydropathy:-0,33662

Domains

Domains [InterPro]
G3DSA:6.20.80.10
158–217
G3DSA:6.20.80.10 G3DSA:6.20.80.10 G3DSA:6.20.80.10 IPR022246
IPR048388
170–246
IPR048388 IPR048388 IPR048388
YP_009618729.1
1 792
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sf17
[NCBI] 		2024305 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009618729.1 [NCBI]
Genbank nucleotide accession
NC_042076.1 [NCBI]
CDS location
range 38856 -> 41234
strand +
CDS
ATGGCTGAATATAAGCTAAGTGAGCTAAACAGTATTGATACAGTTCGCTCAGAAGATTTACTTCACCTAAGAATTATCAAAAGGTCTGATATGCTAGGTGATGAAGACCGTAAAATGACCTATGCAAATTTCCTTGCCTCTTTCAAACTAGAAAGATTCTTACAACTAACTGGTGGGGATATGACAGGGAATCTTGGCATCGTTAAATTAAGATACGGTGGAAAAGACTTATTAGACCCAACAGGTTCTTCTGAGGTTATTCTCGGTGACACTGCCAAGACCTTTAGAATTAATGCAAGTGCTTTAAGATTAACTGTAAATGATGCCACAAGGTCTGCAACAGTTTATCACACACTTAATAAACCATCTCCTAATGAATTAGGTATGAGAACTAACACTGAAAATGATGCAAGATATGCTATGAAGGAAACTGAAAATACCTTCTTGGCAAGACAAATCATTAATATCAACGGTGTTGGTTTGACACTTAAAAGTATCTTACCAGATGGTGGAGCATATATTGAAGCAAGAGATTCAAATAATGCTTTGAGATTCACAGTTGGTAACTTGACTTCTGGTACTGATGTTACATTAGTTAACAGCAAAGGTGCTACGTTGACTCTTGGTACAAACTCTGTTAGTGTTGACAAGAACTTTGAAATCAATGGTCAGGTTCAGCCTAATAACTGGAATAACCTTGATGCAAGATTCTTTACACAGACTGCTGCTGACCAGAGATTTGCACGACTTAATGCAAGTAATAACTTTGTTGGGGTTAACAACTTCAACGGGAAGACTTACGTTATTGCAGATAGTAATGCACTTAACTTAAGAGCGGCTACAGAGAATGCTGCATTATTTATGCGTGGTTATAACAGTGCTGGGACAGGTGCTTGGTATGTAGGTCAACCAGATGGTACGCAGTCTGAGGTTGTTTTAGCAAACCAGATGACAAATGTTAACTTGAAAATTGCTACAGAGTTTTCATTTAACAAAGCTATCAACGTAACTGGTCAGGTAAAACCAAGTGACTTTGCAAACTTTGATACAAGATATGTTCCAAGCTCTTTAACGAACGTTCTTGCAAGAACTAATGCTGCAAACGTTTTTACTAACCCACAAACTATTGTTACTACAGATGCGGCTTTCACATTGCAAAGTGGGACAGCTAATTCATCACTGTATATTGTTGGTGCTAATGCAGACGGCAATAGACGTTGGTATGTTGGTAACGGTGAAGGTAGCAGACCAAATTCCCTGTTCCTATACAACTATTCAAGTGGTGGTGTGCAGTTAGAAATTGCTGAGACTTTCATGTTTAATAGAAGCGTATCAGTATCTGGTCAGGTTCAGCCTACAGATTGGACAAACTTTGACTCAAGATATTACACACAATCTGCTGCAAACTCAAGATATATGTTGTCTGGTGTGTCTGGAACTGGAACAGAAGTAGGTGATGCAACAGGTATTGCTTGGAATTCAAAAACAGGTTTGTACAGTGTTACAAATTCAACTGGTGGGTCTACTCACTTAGTTTACCAAATGCACCTTGGAGTTGGTACATCTACACCGACTGCACAGTTTAAATTTAACTACAAGAATACTGGAATCTATTATAGAACAGCAAGGGATGGATTTGGTTTTGAAGAGGTTTGGGCTAAAATCTACACAGACCAAGACAAACCTACACCCTCTGAACTTGGTGCTTACACCAAGGCTGAAGTAGACCAACGTATTGCCTCTGCGGTAACTGATTCTACAGACCTCAAGAAAGTGTATCCAGTAGGAATTGTGACGTTCTTTGCTTCTAATGTCAACCCAAATACAGCTTTCCCAGGCACTACTTGGACTTACTTGACAGAGGGTGCAAACAGAACTATTAGAATCGGTTCTGCAAATGGTTCCGATGTGAAAGGGCTTGGTGGTGCTGATACAGTTGCATTAAGTGTTGGTCATATTCCTGCACACACTCATAGCTTCTCTGGAACAACAAGTACATTTGATTATGGCACTAAGTACACAGACGCTCAAGGTGCTCACGACCATGACAGAGGTAACATGGAAATCTCTGGTGACTTTGGTTTCTTCAGAAGTGATGCAAATAGCTTCTATACAGCAAGTGGGGCATTCGCTATCTCAGGTTCACAAGCCTCTAGGGGTTATACTGGTTCACAATTCACTTATGGTACACCTGTCAACTTCTACGCATCAAGAACTTGGACAGGGAGAACAAGTTGGGTAGGTGCTCACGGTCACGGTGTAGGTATTGGTGCTCACAACCACACATTCAGTGGTAACACTGGTGCAACTGGTTCTGGTGCAGCATTCAGTGTTCTTAACACTTACATTAAATTAATGGCTTGGGTAAGAACTGCATAA

Tertiary structure

PDB ID
572b63da0f6b2dae3419c03ca0a570b35ff8c737b7ef669f0d994c432b1450e9
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6670
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank