Protein

View in Explore
Genbank accession
YP_009811107.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,98
Seq2Symm
C6 confidence 0,999
C6 0,999
C3 0,010
C1 0,000
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MANTIKTVMTYPLNGSTVDFNIPFEYLARKFVTITLIGNDRKVLTLNQDYRFSTKTTITLTKAWGPADGYDTIEVRRYTSATDRLVDFADGSILRAYDLNIAQVQTLHVAEEARDLTADTIGVNNDGNLDARGRRIVNVGDAVGDYDAINLHMMKTWNTSALNSANAAAASQAAAKTSENNSKTSENNAKTSENNSKTSENNAYQWAQRAEDSPVQGSEFSSYHYSRKSAKSAAAASVSEGNAATSERNAKTSENNAKTSETAAAASAQTAKDEAAKLENMNDLAAAIDHVDGVNVYWKGLLTAARVDAGELRATGGLFRLQNQGREMNFTLPASGAQVMVNRSSALNAINWGNMAQYSVGPIHVATSSSNIMGNQGAHLVWNESGDGRGSMVVNRGGGSGGFNFRFVNADNTQETGSVRMSGGGEMTTTGSIWTKDRVFVGGDGTNRAQLAADGNVWGTRWNSSGEWLYDWLIRNCMADMGRGGQQYRGGARVAWECSPGCFLTGTNTNVGDGRDMGSYFRQLVGRKINGGQFGIGDF
Physico‐chemical
properties
protein length:539 AA
molecular weight: 57869,99750 Da
isoelectric point:6,14847
aromaticity:0,07978
hydropathy:-0,50037

Domains

View on InterPro
Domain architecture
YP_009811107.1
1 539 aa
ATT 1–131 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009811107.1
1 539 aa
Domain Start End Length (AA) Confidence
N-terminal 1 172 172 0,8882
Central domain 173 371 200 0,8082
C-terminal 372 539 167 0,7520
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Dickeya phage vB_DsoP_JA10 [NCBI] · taxon 2283033
Uroviricota Caudoviricetes Autographivirales Autotranscriptaviridae Ningirsuvirus Ningirsuvirus JA10
Host
Dickeya solani MK10 [NCBI] · taxon 1224151
Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Dickeya Dickeya solani

Coding sequence (CDS)

Genbank protein accession
YP_009811107.1 [NCBI]
Genbank nucleotide accession
NC_048052.1 [NCBI]
CDS location
range 34181 -> 35800
strand +
CDS
ATGGCGAATACCATTAAGACCGTTATGACTTACCCGCTGAATGGCTCGACTGTGGATTTCAATATTCCCTTTGAGTATCTGGCCCGTAAGTTCGTGACGATTACCCTGATTGGTAATGACCGTAAGGTACTGACTCTCAATCAGGATTACCGATTCTCTACGAAGACCACCATTACCTTAACGAAGGCATGGGGTCCTGCTGATGGTTACGACACCATTGAGGTTCGTCGTTATACCTCTGCGACCGACCGTCTGGTTGACTTTGCGGACGGTTCGATTCTCCGTGCGTATGACCTCAACATCGCTCAGGTGCAGACACTCCACGTTGCTGAAGAAGCGCGAGACCTGACTGCTGACACTATCGGTGTGAACAACGATGGTAACCTTGATGCCCGTGGTCGTCGTATCGTGAACGTAGGTGATGCTGTAGGTGACTACGATGCTATCAACCTGCACATGATGAAGACATGGAACACCTCTGCGTTGAACTCTGCGAACGCTGCTGCTGCCTCTCAGGCCGCTGCCAAGACCTCGGAGAACAACTCGAAGACCTCTGAGAATAACGCTAAGACCTCAGAGAACAACTCGAAGACCTCTGAGAACAATGCGTACCAATGGGCGCAACGTGCAGAGGACTCTCCGGTGCAGGGTAGTGAGTTCTCCTCGTACCACTACTCACGCAAGTCCGCTAAGAGTGCTGCTGCTGCGAGTGTTTCTGAAGGCAACGCTGCGACTTCTGAGCGTAACGCCAAGACCTCTGAGAACAACGCTAAGACCTCAGAGACTGCCGCTGCTGCTTCTGCTCAGACCGCTAAGGATGAGGCTGCTAAGCTGGAGAACATGAACGACCTCGCGGCTGCTATCGACCATGTGGATGGCGTTAACGTCTACTGGAAGGGTCTGCTGACTGCGGCTCGTGTTGACGCTGGTGAGCTACGGGCGACTGGTGGTCTGTTCCGTCTACAGAACCAAGGCCGTGAGATGAACTTCACTCTACCCGCAAGTGGTGCTCAGGTGATGGTTAACCGCTCAAGCGCACTCAATGCGATTAATTGGGGCAACATGGCTCAGTATAGCGTGGGTCCTATTCATGTGGCCACATCATCGAGCAACATTATGGGTAATCAGGGTGCACACCTTGTGTGGAACGAATCGGGTGATGGCCGTGGCTCAATGGTGGTTAACCGTGGTGGTGGCTCTGGTGGTTTCAACTTCCGGTTCGTCAACGCAGATAACACACAGGAGACTGGTAGTGTCCGTATGTCTGGCGGTGGCGAGATGACCACGACTGGTAGCATCTGGACGAAAGACCGCGTGTTCGTTGGTGGTGATGGCACTAACCGTGCTCAGTTGGCCGCAGATGGTAACGTATGGGGTACTCGCTGGAATAGTAGTGGTGAGTGGCTCTATGACTGGCTCATCCGTAACTGTATGGCCGATATGGGGCGTGGTGGTCAACAGTATCGTGGTGGTGCTCGTGTTGCGTGGGAGTGCTCACCGGGTTGCTTCCTGACTGGTACTAACACCAACGTGGGCGATGGACGAGACATGGGCAGCTACTTCCGCCAGCTTGTCGGTCGTAAAATCAATGGTGGACAATTTGGTATTGGAGACTTCTAA

Genome Context

Tertiary structure

YP_009811107.1
ESMFold structure
Source ESMFold
pLDDT 69.4
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 30258425 GenBank