Protein

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Genbank accession
YP_009811107.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MANTIKTVMTYPLNGSTVDFNIPFEYLARKFVTITLIGNDRKVLTLNQDYRFSTKTTITLTKAWGPADGYDTIEVRRYTSATDRLVDFADGSILRAYDLNIAQVQTLHVAEEARDLTADTIGVNNDGNLDARGRRIVNVGDAVGDYDAINLHMMKTWNTSALNSANAAAASQAAAKTSENNSKTSENNAKTSENNSKTSENNAYQWAQRAEDSPVQGSEFSSYHYSRKSAKSAAAASVSEGNAATSERNAKTSENNAKTSETAAAASAQTAKDEAAKLENMNDLAAAIDHVDGVNVYWKGLLTAARVDAGELRATGGLFRLQNQGREMNFTLPASGAQVMVNRSSALNAINWGNMAQYSVGPIHVATSSSNIMGNQGAHLVWNESGDGRGSMVVNRGGGSGGFNFRFVNADNTQETGSVRMSGGGEMTTTGSIWTKDRVFVGGDGTNRAQLAADGNVWGTRWNSSGEWLYDWLIRNCMADMGRGGQQYRGGARVAWECSPGCFLTGTNTNVGDGRDMGSYFRQLVGRKINGGQFGIGDF
Physico‐chemical
properties
protein length:539 AA
molecular weight: 57869,99750 Da
isoelectric point:6,14847
aromaticity:0,07978
hydropathy:-0,50037

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0657
STR
1–533
DC_0657
YP_009811107.1
1 539
Architecture
ATT
STR
ATT 1-131 | STR 132-533 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009811107.1
1 539
Domain Start End Length (AA) Confidence
N-terminal 1 172 172 0,8882
Central domain 173 371 200 0,8082
C-terminal 372 539 167 0,7520
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-172
Central
173-371
C-terminal
372-539

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoP_JA10
[NCBI] 		2283033 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ningirsuvirus
Host Dickeya solani MK10
[NCBI] 		1224151 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Pectobacteriaceae > Dickeya > Dickeya solani

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811107.1 [NCBI]
Genbank nucleotide accession
NC_048052.1 [NCBI]
CDS location
range 34181 -> 35800
strand +
CDS
ATGGCGAATACCATTAAGACCGTTATGACTTACCCGCTGAATGGCTCGACTGTGGATTTCAATATTCCCTTTGAGTATCTGGCCCGTAAGTTCGTGACGATTACCCTGATTGGTAATGACCGTAAGGTACTGACTCTCAATCAGGATTACCGATTCTCTACGAAGACCACCATTACCTTAACGAAGGCATGGGGTCCTGCTGATGGTTACGACACCATTGAGGTTCGTCGTTATACCTCTGCGACCGACCGTCTGGTTGACTTTGCGGACGGTTCGATTCTCCGTGCGTATGACCTCAACATCGCTCAGGTGCAGACACTCCACGTTGCTGAAGAAGCGCGAGACCTGACTGCTGACACTATCGGTGTGAACAACGATGGTAACCTTGATGCCCGTGGTCGTCGTATCGTGAACGTAGGTGATGCTGTAGGTGACTACGATGCTATCAACCTGCACATGATGAAGACATGGAACACCTCTGCGTTGAACTCTGCGAACGCTGCTGCTGCCTCTCAGGCCGCTGCCAAGACCTCGGAGAACAACTCGAAGACCTCTGAGAATAACGCTAAGACCTCAGAGAACAACTCGAAGACCTCTGAGAACAATGCGTACCAATGGGCGCAACGTGCAGAGGACTCTCCGGTGCAGGGTAGTGAGTTCTCCTCGTACCACTACTCACGCAAGTCCGCTAAGAGTGCTGCTGCTGCGAGTGTTTCTGAAGGCAACGCTGCGACTTCTGAGCGTAACGCCAAGACCTCTGAGAACAACGCTAAGACCTCAGAGACTGCCGCTGCTGCTTCTGCTCAGACCGCTAAGGATGAGGCTGCTAAGCTGGAGAACATGAACGACCTCGCGGCTGCTATCGACCATGTGGATGGCGTTAACGTCTACTGGAAGGGTCTGCTGACTGCGGCTCGTGTTGACGCTGGTGAGCTACGGGCGACTGGTGGTCTGTTCCGTCTACAGAACCAAGGCCGTGAGATGAACTTCACTCTACCCGCAAGTGGTGCTCAGGTGATGGTTAACCGCTCAAGCGCACTCAATGCGATTAATTGGGGCAACATGGCTCAGTATAGCGTGGGTCCTATTCATGTGGCCACATCATCGAGCAACATTATGGGTAATCAGGGTGCACACCTTGTGTGGAACGAATCGGGTGATGGCCGTGGCTCAATGGTGGTTAACCGTGGTGGTGGCTCTGGTGGTTTCAACTTCCGGTTCGTCAACGCAGATAACACACAGGAGACTGGTAGTGTCCGTATGTCTGGCGGTGGCGAGATGACCACGACTGGTAGCATCTGGACGAAAGACCGCGTGTTCGTTGGTGGTGATGGCACTAACCGTGCTCAGTTGGCCGCAGATGGTAACGTATGGGGTACTCGCTGGAATAGTAGTGGTGAGTGGCTCTATGACTGGCTCATCCGTAACTGTATGGCCGATATGGGGCGTGGTGGTCAACAGTATCGTGGTGGTGCTCGTGTTGCGTGGGAGTGCTCACCGGGTTGCTTCCTGACTGGTACTAACACCAACGTGGGCGATGGACGAGACATGGGCAGCTACTTCCGCCAGCTTGTCGGTCGTAAAATCAATGGTGGACAATTTGGTATTGGAGACTTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9a850fbf98c89141e086165161ba41e91a955f6ce90727d25ce47d09bf0c7a4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6944
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank