Protein

View in Explore
Genbank accession
YP_009811107.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MANTIKTVMTYPLNGSTVDFNIPFEYLARKFVTITLIGNDRKVLTLNQDYRFSTKTTITLTKAWGPADGYDTIEVRRYTSATDRLVDFADGSILRAYDLNIAQVQTLHVAEEARDLTADTIGVNNDGNLDARGRRIVNVGDAVGDYDAINLHMMKTWNTSALNSANAAAASQAAAKTSENNSKTSENNAKTSENNSKTSENNAYQWAQRAEDSPVQGSEFSSYHYSRKSAKSAAAASVSEGNAATSERNAKTSENNAKTSETAAAASAQTAKDEAAKLENMNDLAAAIDHVDGVNVYWKGLLTAARVDAGELRATGGLFRLQNQGREMNFTLPASGAQVMVNRSSALNAINWGNMAQYSVGPIHVATSSSNIMGNQGAHLVWNESGDGRGSMVVNRGGGSGGFNFRFVNADNTQETGSVRMSGGGEMTTTGSIWTKDRVFVGGDGTNRAQLAADGNVWGTRWNSSGEWLYDWLIRNCMADMGRGGQQYRGGARVAWECSPGCFLTGTNTNVGDGRDMGSYFRQLVGRKINGGQFGIGDF
Physico‐chemical
properties
protein length:539 AA
molecular weight: 57869,99750 Da
isoelectric point:6,14847
aromaticity:0,07978
hydropathy:-0,50037

Domains

Domains [InterPro]
IPR005604
1–131
IPR005604
YP_009811107.1
1 539
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Dickeya phage vB_DsoP_JA10
[NCBI] 		2283033 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009811107.1 [NCBI]
Genbank nucleotide accession
NC_048052.1 [NCBI]
CDS location
range 34181 -> 35800
strand +
CDS
ATGGCGAATACCATTAAGACCGTTATGACTTACCCGCTGAATGGCTCGACTGTGGATTTCAATATTCCCTTTGAGTATCTGGCCCGTAAGTTCGTGACGATTACCCTGATTGGTAATGACCGTAAGGTACTGACTCTCAATCAGGATTACCGATTCTCTACGAAGACCACCATTACCTTAACGAAGGCATGGGGTCCTGCTGATGGTTACGACACCATTGAGGTTCGTCGTTATACCTCTGCGACCGACCGTCTGGTTGACTTTGCGGACGGTTCGATTCTCCGTGCGTATGACCTCAACATCGCTCAGGTGCAGACACTCCACGTTGCTGAAGAAGCGCGAGACCTGACTGCTGACACTATCGGTGTGAACAACGATGGTAACCTTGATGCCCGTGGTCGTCGTATCGTGAACGTAGGTGATGCTGTAGGTGACTACGATGCTATCAACCTGCACATGATGAAGACATGGAACACCTCTGCGTTGAACTCTGCGAACGCTGCTGCTGCCTCTCAGGCCGCTGCCAAGACCTCGGAGAACAACTCGAAGACCTCTGAGAATAACGCTAAGACCTCAGAGAACAACTCGAAGACCTCTGAGAACAATGCGTACCAATGGGCGCAACGTGCAGAGGACTCTCCGGTGCAGGGTAGTGAGTTCTCCTCGTACCACTACTCACGCAAGTCCGCTAAGAGTGCTGCTGCTGCGAGTGTTTCTGAAGGCAACGCTGCGACTTCTGAGCGTAACGCCAAGACCTCTGAGAACAACGCTAAGACCTCAGAGACTGCCGCTGCTGCTTCTGCTCAGACCGCTAAGGATGAGGCTGCTAAGCTGGAGAACATGAACGACCTCGCGGCTGCTATCGACCATGTGGATGGCGTTAACGTCTACTGGAAGGGTCTGCTGACTGCGGCTCGTGTTGACGCTGGTGAGCTACGGGCGACTGGTGGTCTGTTCCGTCTACAGAACCAAGGCCGTGAGATGAACTTCACTCTACCCGCAAGTGGTGCTCAGGTGATGGTTAACCGCTCAAGCGCACTCAATGCGATTAATTGGGGCAACATGGCTCAGTATAGCGTGGGTCCTATTCATGTGGCCACATCATCGAGCAACATTATGGGTAATCAGGGTGCACACCTTGTGTGGAACGAATCGGGTGATGGCCGTGGCTCAATGGTGGTTAACCGTGGTGGTGGCTCTGGTGGTTTCAACTTCCGGTTCGTCAACGCAGATAACACACAGGAGACTGGTAGTGTCCGTATGTCTGGCGGTGGCGAGATGACCACGACTGGTAGCATCTGGACGAAAGACCGCGTGTTCGTTGGTGGTGATGGCACTAACCGTGCTCAGTTGGCCGCAGATGGTAACGTATGGGGTACTCGCTGGAATAGTAGTGGTGAGTGGCTCTATGACTGGCTCATCCGTAACTGTATGGCCGATATGGGGCGTGGTGGTCAACAGTATCGTGGTGGTGCTCGTGTTGCGTGGGAGTGCTCACCGGGTTGCTTCCTGACTGGTACTAACACCAACGTGGGCGATGGACGAGACATGGGCAGCTACTTCCGCCAGCTTGTCGGTCGTAAAATCAATGGTGGACAATTTGGTATTGGAGACTTCTAA

Tertiary structure

PDB ID
9a850fbf98c89141e086165161ba41e91a955f6ce90727d25ce47d09bf0c7a4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6944
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Jumbo Bacteriophages Are Represented Within an Increasing Diversity of Environmental Viruses Infecting the Emerging Phytopathogen, Dickeya solani Day,A.W., Ahn,J. and Salmond,G.P.C. 2018 — GenBank