Protein

View in Explore
Genbank accession
ALA06997.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MIKVYDGAKELPYDYYFNYSDSSQAYDKRARVIKGKLVIEDYKETNPVDFMTYWSGRPDITVIESKQVGYMMNIFNISNFSYSEQMDSGNVIYEVELIRRMAPKQINSVTFKDITQGTLADLEATYAMIVSVDDIQVNGYTYFTDNKYVLLSNVKKTEYPNEVGRCRVVSGTSFYVTIGGGANVRFIQGHGGVPFPNKIRVGHESDQKNQFTGRVMLVD
Physico‐chemical
properties
protein length:219 AA
molecular weight: 24964,93780 Da
isoelectric point:5,77617
aromaticity:0,12785
hydropathy:-0,36758

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ALA06997.1
1 219
Domain Start End Length (AA) Confidence
N-terminal 1 109 109 0,8263
Central domain 110 208 100 0,0407
C-terminal 209 219 10 0,9329
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-109
Central
110-208
C-terminal
209-219

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage GE1
[NCBI] 		1698369 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus garvieae
[NCBI] 		1363 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ALA06997.1 [NCBI]
Genbank nucleotide accession
KT339177 [NCBI]
CDS location
range 22100 -> 22759
strand +
CDS
ATGATAAAGGTGTACGACGGAGCAAAAGAATTACCTTATGACTATTATTTTAATTATTCTGATAGTTCACAGGCTTATGACAAGAGGGCTAGAGTTATCAAAGGTAAACTAGTTATAGAGGATTACAAAGAAACTAATCCCGTTGATTTCATGACATATTGGAGTGGCAGACCCGACATCACAGTAATTGAGAGCAAGCAAGTTGGTTACATGATGAATATTTTTAATATATCTAATTTTAGTTATAGCGAGCAAATGGATAGCGGGAATGTCATTTATGAGGTGGAATTAATAAGAAGAATGGCTCCTAAGCAGATCAACAGCGTTACTTTCAAAGATATAACACAAGGCACTTTAGCTGACTTAGAAGCGACTTATGCAATGATTGTTAGTGTTGATGATATACAAGTTAACGGGTACACATATTTCACTGACAACAAATATGTACTTTTATCAAATGTCAAGAAAACAGAGTACCCTAATGAGGTAGGCAGATGTAGAGTAGTTAGCGGAACAAGTTTTTATGTAACTATTGGTGGTGGCGCAAACGTTAGGTTTATACAAGGTCACGGCGGTGTTCCTTTTCCTAATAAAATAAGGGTAGGTCATGAGTCAGATCAAAAAAATCAATTCACAGGAAGGGTTATGTTGGTGGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
f1e2106506ff2d424f5d7f19cafdc89320fd4068a82d3d68ceb8d1efa6ac8338
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4518
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A new virulent phage infecting Lactococcus garvieae, with homology to Lactococcus lactis phages Eraclio,G., Tremblay,D.M., Lacelle-Cote,A., Labrie,S.J., Fortina,M.G. and Moineau,S. 2015 26407890 GenBank