Phage RBP Database

Genbank accession

AGH57960.1 [GenBank]

Protein name

hypothetical protein

RBP type

TF

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence RBPdetect2

Probability 0,95

Seq2Symm

C1 confidence 0,819

C1	0,819
C3	0,768
D3	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAKQTIGLGAAANDNTGDTLRIGGDKINDNFNEIYSTIGNGSTLLLSTGNAAIGQVLKYNGTNFIPGDFGALTTALDVNGNNITSSSSGNVVISPNGSGSVNIVAGGTTSVFNGSTGAVDFPANISYRNEYAALGNAPVAATYPGYFFTVDGDDNPYVNINITAGGVGDTRAAILTQYSGINSLSDVDTTTSAPLNDQVLKWNSTTSKWVPADDQSGLTNLNLFTTISADTGSTTADSSTDSIAIEGGSNISTNIVGDVLTIDFTGTITSTFAGLTDTDTTGLIQGNSIFYNGTSWVRSASPIVWWELGANGSSDFTFSGPGFPNTQNDPTIYVYRGFTYAFDNTANGANHPFRIQETTGLTGNPYTAGQSGNGTSVLYWTVPMDAPTTLYYQCTIHAAMNGTIIVVS

Physico‐chemical properties

protein length:	408 AA
molecular weight:	42308,56960 Da
isoelectric point:	4,05003
aromaticity:	0,09559
hydropathy:	-0,09975

Domain architecture

AGH57960.1

1 408 aa

ATT 1–102 · STR 307–407 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR036240
STR

IPR036240 IPR008972

IPR008987
ATT

IPR008987 IPR008972

G3DSA:1.20.5.960
Unmapped

G3DSA:1.20.5.960

AGH57960.1

1408 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0210
STR

DC_0210

AGH57960.1

1408 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR036240	STR	IPR036240	1	73	Merged direct domain	Gp9-like superfamily	Central	Low	Positional only	146 proteins / 146 hits
IPR008987	ATT	DC_0752	3	102	InterPro cluster	Baseplate structural protein Gp9/Gp10, N-terminal domain	Central	Medium	Text match	242 proteins / 243 hits
G3DSA:1.20.5.960	Unmapped	-	13	41	Gene3D	Bacteriophage t4 gene product 9 (gp9)	-	-	-	-
IPR008972	STR	IPR008972	307	407	Merged direct domain	Cupredoxin	Central	Low	Positional only	3 proteins / 3 hits
IPR008972	STR	IPR008972	329	407	Merged direct domain	Cupredoxin	Central	Low	Positional only	3 proteins / 3 hits

Proteins with similar domain architecture

Phage

Synechococcus phage KBS-M-1A [NCBI] · taxon 889950

Uroviricota Caudoviricetes Pantevenvirales Kyanoviridae Neptunevirus Synechococcus phage KBS-M-1A

Host

Synechococcus [NCBI] · taxon 1129

Cyanobacteriota Cyanophyceae Synechococcales Synechococcaceae Synechococcus

Genbank protein accession

AGH57960.1 [NCBI]

Genbank nucleotide accession

JF974293 [NCBI]

CDS location

range 148102 -> 149328
strand -

CDS

ATGGCTAAACAAACTATTGGGTTAGGTGCTGCAGCAAATGACAATACGGGGGATACCCTCCGTATTGGTGGTGATAAGATTAATGATAACTTTAATGAAATTTATTCAACAATTGGTAATGGCAGTACCCTTTTACTCTCAACTGGTAATGCTGCTATTGGTCAAGTTTTAAAATACAATGGAACGAATTTCATTCCTGGTGATTTTGGAGCATTGACAACGGCTCTGGATGTTAATGGCAATAATATTACTTCTTCTAGTAGTGGTAATGTTGTTATAAGTCCTAATGGAAGTGGGAGTGTTAATATTGTTGCTGGTGGCACTACTAGTGTCTTTAATGGTTCGACAGGAGCTGTAGATTTTCCAGCGAATATCAGTTATAGGAACGAATATGCTGCCTTAGGCAATGCTCCTGTGGCAGCAACTTATCCTGGATATTTCTTTACAGTAGATGGAGATGATAATCCATATGTGAACATTAATATTACTGCTGGTGGAGTTGGTGATACCAGAGCCGCAATTCTCACCCAATATTCGGGTATCAATAGTTTGTCTGATGTTGATACCACCACATCAGCACCATTGAATGACCAGGTTCTAAAATGGAATTCCACTACTAGTAAGTGGGTTCCAGCAGATGACCAGTCTGGATTGACAAACTTAAATTTATTTACTACTATTTCTGCTGATACTGGAAGCACTACTGCAGATTCGTCTACGGATTCTATTGCCATTGAAGGTGGGTCGAACATCTCGACCAATATTGTTGGAGATGTTCTTACAATTGATTTTACTGGGACAATTACATCAACTTTTGCAGGACTTACCGATACTGATACCACGGGATTAATTCAAGGAAATAGTATTTTTTATAACGGAACCAGTTGGGTCAGAAGTGCAAGTCCTATTGTATGGTGGGAACTTGGAGCGAATGGTTCTAGTGACTTTACCTTTAGTGGACCAGGATTTCCAAATACACAAAACGATCCAACAATTTATGTTTATAGGGGATTCACTTACGCCTTTGATAATACTGCAAATGGTGCTAATCACCCGTTTAGGATTCAGGAGACTACTGGTCTTACTGGCAACCCATATACAGCGGGTCAATCTGGGAATGGAACATCAGTTCTTTATTGGACCGTTCCAATGGATGCTCCAACAACACTTTATTATCAATGCACTATTCATGCTGCCATGAATGGAACCATCATTGTTGTAAGCTGA

Protein

Domains

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)