Phage RBP Database

Genbank accession

WNA14188.1 [GenBank]

Protein name

peptidase G2

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect2

Probability 0,97

Seq2Symm

C3 confidence 0,990

C3	0,990
D3	0,980
C1	0,011

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MPKYPYRKAGSGWDRVFRNNHNQNLDDIADDIKGSYSEIAAHKNAETAHTSDQIDHGGFSLRTYVDSLYNRMKNLILNADGTNVKEVVDSRVGTDGEVFPLLKERLDREYLKLLQKIKRTVNVDDFGADPTGVNDSTEAFQRAIGTGKVRVNLSAGTYIVKGVKLPSWTYMVGQGIGVTTLKLHEDTPASEWVVTNADHANGNRNITVEGMTLDWNPDRQGGVGATGGLHSSGLTLAQVKFGIVREVESVKPGLHSFDASAPTYDISATDYTQQGCRYIWFDRCVGSGYGDDGISTHYSEYIFITNCVMTNPRGTAHEDGRANSNGIEIDDGSKNVWVIDCYTEGNVRGVEVKAHAAWPASQNVHIRGHESYRDIRAYDLRHIGHHLATEPWSETARDVTLIDCTAREPIYNDLYAGLAPKALVISAYQRVLVSDFRAIGDPTYDYKGTDIIAFQYKSRKINVNGLQMYGFATAGSDVHIYGGDQRTDDVYISNFTIHDSAPVGIGIGGGVYYVTLSNGIVHTRGGTAGITSPNNQATIIAVRAVGYTDAAVLAGQKYKVVPNNLKGGFRAAASSGSPLTDTSAIIAGSGTIIAKGERNFIAGVAGGATTEGSRNGVLYSWNSHTKGESGSSAVIASKNVVNTKEYTVALGHGGGDPSEANKKIEIDAMGGRVRATGAIESASNLQDFGEYFESIDGQKIDASYLVTLEGDKIRKADRGDKILGVVSKTAGLVLGGAAFYWNDRYLHDEFGGLIYREIYEDGRLVTVPAENPDYDPSVEYTPREERDEWHVIGLIGQVYVRIDETVAVGDSVTAVGGIATKAESDGYGTVMKIKTPYNAEKGYGVAQMIVTPQH

Physico‐chemical properties

protein length:	854 AA
molecular weight:	92394,56630 Da
isoelectric point:	5,61913
aromaticity:	0,08665
hydropathy:	-0,35761

Domain architecture

WNA14188.1

1 854 aa

STR 114–562 · RBD 563–850 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334 G3DSA:2.160.10.20 G3DSA:2.40.300.10

IPR011050
STR

IPR011050 IPR006626 IPR021865

IPR024535
ENZ

IPR024535 IPR006626 IPR021865

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 G3DSA:4.10.80.40

WNA14188.1

1854 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0125
ATT

DC_0125 DC_0616

WNA14188.1

1854 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	114	562	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	118	407	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR024535	ENZ	DC_0410	121	331	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR006626	Unmapped	-	203	233	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	276	298	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	299	331	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	333	354	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	487	509	InterPro	Parallel beta-helix repeat	-	-	-	-
G3DSA:2.160.10.20	RBD	G3DSA:2.160.10.20	563	680	Merged direct domain	G3DSA:2.160.10.20	C-terminal	Low	Positional only	6 proteins / 6 hits
IPR021865	CHP	DC_0580	632	850	InterPro cluster	Peptidase G2, IMC autoproteolytic cleavage domain	C-terminal	High	Text match	84 proteins / 84 hits
IPR021865	CHP	DC_0580	645	850	InterPro cluster	Peptidase G2, IMC autoproteolytic cleavage domain	C-terminal	High	Text match	84 proteins / 84 hits
G3DSA:2.40.300.10	RBD	G3DSA:2.40.300.10	687	848	Merged direct domain	G3DSA:2.40.300.10	C-terminal	Low	Positional only	19 proteins / 19 hits
G3DSA:4.10.80.40	RBD	G3DSA:4.10.80.40	740	778	Merged direct domain	G3DSA:4.10.80.40	C-terminal	Low	Positional only	3 proteins / 3 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WNA14188.1

1 854 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	135	135	0,9882
Central domain	136	649	515	0,9796
C-terminal	650	854	204	0,8876

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Bacillus phage phi18-2 [NCBI] · taxon 3062017

Uroviricota Caudoviricetes Bacillus phage phi18-2

Host

Bacillus subtilis [NCBI] · taxon 1423

Bacillota Bacilli Caryophanales Bacillaceae Bacillus Bacillus subtilis

Genbank protein accession

WNA14188.1 [NCBI]

Genbank nucleotide accession

OR208547 [NCBI]

CDS location

range 17019 -> 19583
strand +

CDS

ATGCCGAAATATCCGTACAGAAAAGCGGGATCGGGATGGGATCGTGTTTTTCGTAATAACCACAACCAAAACCTCGATGATATTGCGGATGACATTAAAGGATCATATAGCGAGATTGCTGCACATAAGAACGCAGAGACCGCCCACACGTCGGATCAAATCGACCATGGCGGTTTTTCTTTGCGCACATACGTGGACAGTCTTTATAACCGCATGAAAAACCTGATTCTTAACGCGGACGGTACCAACGTAAAAGAGGTCGTAGATTCGCGCGTAGGAACTGACGGTGAAGTATTTCCGTTACTAAAAGAACGGCTTGATCGCGAATACCTTAAGCTTCTACAGAAGATCAAACGGACGGTTAACGTTGATGACTTCGGAGCAGATCCGACCGGCGTTAACGATAGTACAGAAGCGTTTCAGAGGGCGATTGGTACAGGTAAAGTCCGTGTTAATTTATCTGCGGGCACGTATATCGTAAAGGGCGTTAAACTGCCGTCGTGGACTTATATGGTCGGCCAGGGTATCGGAGTTACAACGTTGAAGCTTCACGAAGATACGCCGGCTAGCGAATGGGTGGTCACTAACGCGGATCACGCAAACGGCAACCGAAATATTACCGTCGAAGGCATGACGTTAGACTGGAACCCAGATCGTCAAGGCGGCGTCGGAGCAACGGGCGGCTTACACTCGAGCGGCCTGACACTCGCGCAGGTTAAGTTCGGTATTGTTCGCGAAGTGGAAAGCGTTAAGCCGGGACTTCATAGCTTTGATGCTTCAGCGCCTACTTACGATATCAGCGCGACGGATTATACGCAGCAAGGCTGTCGTTACATTTGGTTCGATCGTTGCGTCGGCTCTGGATACGGAGATGACGGGATCTCTACGCATTATAGCGAGTACATTTTTATCACGAACTGTGTTATGACGAATCCGCGAGGAACTGCGCACGAAGACGGAAGAGCTAACTCGAACGGTATCGAAATTGATGACGGTTCTAAAAACGTATGGGTAATCGACTGTTATACCGAAGGGAACGTAAGAGGCGTAGAAGTAAAAGCGCACGCGGCTTGGCCGGCTTCCCAAAACGTACACATACGCGGACATGAATCTTACCGTGATATTAGGGCGTACGACTTGCGCCACATCGGACACCACTTGGCGACAGAACCGTGGAGTGAAACGGCGCGTGACGTTACTTTGATCGACTGCACAGCGCGAGAACCAATTTATAACGATCTGTATGCCGGTCTTGCTCCAAAGGCGCTCGTTATTTCGGCGTACCAACGGGTCCTCGTTTCAGATTTCCGAGCTATTGGCGATCCTACCTACGATTATAAAGGTACGGACATTATCGCGTTTCAGTATAAGAGCCGGAAGATAAATGTCAACGGCTTGCAGATGTACGGATTCGCGACAGCAGGGTCAGACGTTCATATTTACGGCGGAGATCAGCGAACAGATGACGTTTATATCTCTAACTTTACGATTCATGATTCGGCTCCTGTTGGTATCGGGATCGGAGGCGGCGTCTATTACGTTACGTTGAGCAACGGTATTGTTCACACTAGAGGCGGAACAGCCGGGATCACTTCTCCGAACAACCAGGCCACTATTATTGCGGTTCGTGCGGTGGGTTACACAGACGCAGCAGTATTAGCCGGACAAAAGTACAAGGTGGTTCCAAACAACCTGAAAGGCGGCTTTAGAGCGGCGGCTTCCTCCGGTTCTCCTCTAACGGACACAAGCGCTATCATCGCTGGCTCAGGGACGATTATCGCGAAAGGTGAACGGAATTTCATTGCTGGCGTAGCGGGCGGCGCGACAACGGAAGGTTCGCGGAATGGTGTTTTGTATTCGTGGAATTCGCATACGAAAGGTGAGAGCGGTTCCTCGGCAGTAATTGCGTCTAAAAACGTAGTAAACACGAAAGAATACACCGTTGCTTTGGGACATGGCGGTGGCGACCCGTCGGAAGCGAATAAGAAAATCGAGATTGACGCGATGGGTGGACGAGTTCGAGCTACGGGCGCAATCGAAAGTGCTTCGAATCTACAAGACTTCGGAGAATACTTCGAATCAATCGACGGACAAAAAATCGATGCTTCGTATCTCGTAACGTTGGAAGGCGATAAGATTCGAAAAGCGGACAGAGGCGATAAGATCCTGGGCGTTGTTTCTAAAACTGCGGGCTTGGTACTCGGTGGAGCAGCGTTCTATTGGAATGACCGTTACCTACACGACGAGTTCGGCGGACTTATTTATCGCGAAATTTACGAAGATGGCCGCCTCGTTACAGTTCCTGCGGAGAATCCGGACTACGATCCATCAGTTGAGTATACGCCGCGAGAGGAAAGAGACGAATGGCACGTAATTGGACTAATCGGGCAAGTTTACGTACGTATCGACGAAACCGTCGCGGTAGGAGACAGCGTGACTGCGGTCGGGGGTATCGCAACTAAAGCGGAATCGGACGGCTATGGAACGGTCATGAAAATTAAAACGCCTTATAACGCAGAAAAAGGATACGGTGTAGCGCAAATGATCGTTACGCCGCAGCACTAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)