Protein

View in Explore
Genbank accession
YP_003127248.1 [GenBank]
Protein name
neck passage structure
RBP type
TF
Evidence RBPdetect2
Probability 0,68
Seq2Symm
C3 confidence 0,971
C3 0,971
C1 0,307
C6 0,002
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MSLDNFRNRTILWDTVNKDFPQPIQAMQGDVNARTLLIKIVDNGVECDLTGHSLKLTYQYTNSSNSGFVMIPPKDLAKGEFILVIPTEMTATGVIEANLILLNKDKEQVIVSKNLTFISDSSTVSDLAQEVNNKIDDFTKLLLENMPQVMRSELNDLHAQTESSKSNIELKANLADMTSLQSAMTELKNEVEAFGISPENLVTIKSLLEAIARNASESEVVELINSVKVLTSNISLMSNGDYSPKANQTDLESLQHTVNDHSATISAKANQTDLDNLQANVSRQGIAISTKAEQSDLSITNKNVATAQETANKAESEAKNAMAKATEAQANSLPLNGTAVSAIKLATPRKLRVNLQSSSFQYFDGTADATNIGVSGVLPIANGGTATSDGVINTIAYANSADGTDDFTTVYPNLNLLDGTRDFSGNWSWFEVSTDDGTYKGLTVKKRTGQWGGIYKTFTVPKNSDYTFSAFVKGAGIGTKFVRVVIINGVEKYNLGKTWDSAFDWTRDSITFSAKDIKVGDKIEVSYNISLLGTNPAIWTAGHKWEEGSIATPWMPSASEVTINDYPKYVGFSNIIKPNKKSSDYKWLPMWLASIDRATGLLKPAVMGIDYAQAHPVGSVVTNTSSSSSGYSTGKWENIGSVVVGSTTIYYWKRTA
Physico‐chemical
properties
protein length:656 AA
molecular weight: 71271,13380 Da
isoelectric point:5,22927
aromaticity:0,07622
hydropathy:-0,26494

Taxonomy

Phage
Lactococcus phage CB20 [NCBI] · taxon 665887
Uroviricota Caudoviricetes Skunavirus Skunavirus CB19
Host
Lactococcus lactis [NCBI] · taxon 1358
Bacillota Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus lactis

Coding sequence (CDS)

Genbank protein accession
YP_003127248.1 [NCBI]
Genbank nucleotide accession
NC_013154 [NCBI]
CDS location
range 7085 -> 9055
strand +
CDS
ATGAGTTTAGATAATTTTAGAAATAGAACGATTTTGTGGGACACAGTCAACAAAGACTTTCCCCAGCCAATACAAGCAATGCAAGGCGATGTCAATGCTAGAACGTTATTGATTAAAATAGTTGATAATGGAGTTGAATGTGATTTAACTGGTCATTCATTAAAACTTACATATCAATACACTAATAGTAGTAATTCTGGTTTTGTTATGATCCCTCCTAAGGACTTAGCTAAGGGAGAATTTATTTTGGTAATTCCTACCGAAATGACAGCGACAGGAGTTATTGAAGCGAACTTAATACTTCTCAATAAAGACAAAGAGCAAGTTATTGTCAGTAAGAATCTTACATTTATATCAGACAGTTCTACTGTTTCTGATTTAGCTCAAGAAGTAAATAATAAGATTGATGATTTTACAAAATTATTATTAGAAAATATGCCACAAGTAATGCGTAGTGAGTTGAATGATTTACATGCTCAAACTGAATCAAGCAAGAGCAATATTGAACTTAAAGCAAATTTAGCTGATATGACTAGCTTACAAAGCGCAATGACAGAGCTAAAAAATGAAGTAGAAGCATTTGGTATTAGTCCTGAAAATTTAGTTACTATAAAATCGCTATTAGAAGCAATTGCAAGAAATGCAAGTGAATCGGAAGTTGTTGAACTAATAAATTCAGTAAAGGTTTTAACAAGTAACATTTCTCTGATGAGTAACGGAGATTACTCTCCTAAAGCTAATCAAACAGATTTAGAAAGTTTACAGCATACTGTTAATGACCATTCGGCAACCATTTCAGCAAAAGCCAATCAAACGGATTTAGACAACTTACAAGCTAATGTCAGCAGGCAAGGGATTGCAATTTCAACAAAAGCTGAACAATCAGATTTATCAATCACAAATAAAAATGTCGCAACTGCTCAAGAAACAGCAAATAAAGCTGAAAGTGAAGCCAAAAATGCAATGGCAAAGGCTACCGAAGCACAAGCGAACAGTTTACCACTTAATGGCACCGCGGTAAGTGCAATCAAACTGGCAACACCTAGAAAGCTCAGGGTAAATCTTCAATCTTCATCATTTCAATACTTTGACGGGACTGCTGACGCAACTAATATTGGAGTTTCAGGTGTGCTCCCTATTGCAAATGGAGGTACAGCAACAAGTGACGGAGTTATAAATACAATAGCATACGCTAACAGTGCTGACGGAACGGACGATTTCACGACTGTTTATCCTAATTTGAATTTGTTAGACGGTACTAGAGATTTTAGTGGTAATTGGTCATGGTTCGAAGTTTCGACCGATGACGGAACATATAAAGGCTTAACTGTTAAAAAACGAACTGGTCAATGGGGCGGTATTTATAAAACATTTACAGTTCCCAAAAATTCCGATTACACATTTTCTGCTTTTGTTAAAGGGGCTGGAATAGGTACTAAATTTGTAAGAGTTGTAATTATTAATGGGGTAGAAAAATATAACCTAGGGAAAACTTGGGATTCAGCTTTTGATTGGACGAGAGACTCAATTACTTTTTCAGCTAAAGATATAAAAGTAGGCGATAAAATCGAGGTAAGCTATAATATTTCATTATTGGGTACAAATCCAGCAATATGGACTGCTGGTCATAAGTGGGAAGAGGGTTCAATCGCAACTCCTTGGATGCCCTCAGCTAGTGAAGTCACAATAAATGATTATCCAAAGTATGTAGGGTTTAGTAATATCATTAAACCTAATAAGAAAAGTTCTGATTACAAATGGTTACCAATGTGGTTAGCATCAATTGATAGGGCTACTGGCCTACTTAAGCCTGCGGTCATGGGTATAGATTATGCTCAAGCTCACCCAGTTGGCTCGGTAGTCACAAATACTTCAAGTTCATCATCAGGGTATTCTACAGGAAAATGGGAAAATATCGGTTCGGTAGTGGTTGGTTCAACAACAATATATTATTGGAAACGTACTGCATAA

Genome Context

Tertiary structure

YP_003127248.1
ESMFold2 structure
Source ESMFold2
pLDDT 70.6
Oligomeric state monomer
Download structure