Protein

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Genbank accession
XYH49946.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,96
Protein sequence
MATNIRTVITYALDGSKTDFTIPFEYLARKFVVVTLIGVDRRELVLTTDYRFATKTVISTTIAWGAAQGYTSIEIRRFTSATERLVDFTDGSILRAYDLNVSQLQTIHVAEEARDMTAETIGVNNDGNLDARGRRIVNVADAVDSGDAINLGQVLQQNQNAWQARDEALGFRNEAEGFRNVAIDRANVATQQAAVATDRANVATHRAADAEFQANRATQMNSEASFWNSLARRWASEETNIVVENGLYSARHYAILAASYRDNAVAAAIAASNEASRSKTEADRAKTEADKLGNWNALAGTIDSVSGPNVSWKGIISAPSVRATSNAGYILMEPNANNPALTPIITFKGFRGNPDANVMWIGGDTGDSGAAMAHGMFSVNTGQHFQFNVDGSSHIGSMNNSASILLGPPSSPNMTLSTLNGNGIVNVEGSMSVSGVIESRAIELGKPGAPPFIDFHSSDVPVDYNVRVIAYNAPDAATTGRGQLFIEAASGLVTSHDVEARGAVYSGGLSGGKLTSTGNIEGSEWGSRTLKGYVDDSRKASLHASPLRMLWRRDIGTFNNGFDSNGYPLPADASRPLTVRPWGAGQSYTFSEPLWGKQLFSIHSDSFEGMNSGQNQFNFCRDWGAIPRMVGVTAKADNGNVITFTSFEIAVSNEWWRFALSQDGLTLAVVRTGSLARPIYALYIADIP
Physico‐chemical
properties
protein length:688 AA
molecular weight: 73992,36420 Da
isoelectric point:5,44730
aromaticity:0,08576
hydropathy:-0,21497

Domains

Domains [InterPro]
IPR005604
ATT
1–131
IPR005604
DC_0264
STR
1–682
DC_0264
XYH49946.1
1 688
Architecture
ATT
STR
ATT 1-131 | STR 132-682 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XYH49946.1
1 688
Domain Start End Length (AA) Confidence
N-terminal 1 476 476 0,5767
Central domain 477 675 200 0,2808
C-terminal 676 688 12 0,9937
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-476
Central
477-675
C-terminal
676-688

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage JJY1
[NCBI] 		3415715 Viruses >
Host Pectobacterium carotovorum
[NCBI] 		554 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XYH49946.1 [NCBI]
Genbank nucleotide accession
PV433195.1 [NCBI]
CDS location
range 32855 -> 34921
strand +
CDS
ATGGCTACAAACATTAGAACAGTCATAACTTATGCTCTGGACGGCTCAAAGACAGACTTTACGATACCCTTTGAGTATCTAGCCCGTAAGTTCGTAGTGGTCACACTTATTGGTGTAGACCGCCGTGAGTTGGTCTTAACGACCGACTACAGGTTCGCAACCAAGACGGTTATCTCAACGACTATCGCTTGGGGTGCGGCACAAGGTTATACCTCAATTGAGATTCGTCGATTCACATCAGCCACTGAGAGATTAGTGGACTTTACTGATGGTTCTATCTTAAGGGCTTATGACCTTAATGTATCTCAGTTACAGACCATTCATGTTGCTGAGGAAGCGCGTGATATGACAGCAGAGACTATTGGTGTTAACAATGATGGTAACCTTGACGCTCGTGGTCGTCGTATTGTTAATGTTGCAGATGCAGTTGATTCAGGGGACGCCATTAACTTAGGTCAGGTCTTACAGCAGAACCAGAACGCATGGCAGGCTCGTGATGAGGCTTTAGGCTTCCGTAATGAAGCTGAAGGTTTCCGTAATGTTGCTATAGACCGTGCGAACGTAGCGACTCAACAGGCAGCAGTGGCAACCGACCGGGCTAACGTGGCGACCCATCGTGCAGCAGACGCAGAGTTCCAAGCTAATCGCGCCACTCAGATGAACTCTGAGGCGTCTTTCTGGAACTCACTGGCTCGTCGCTGGGCGTCAGAGGAGACCAATATAGTCGTGGAGAATGGTCTGTATTCAGCACGCCATTATGCCATCCTAGCGGCTAGCTATCGGGACAATGCTGTGGCGGCCGCTATTGCAGCCAGTAATGAGGCATCCCGCTCCAAGACTGAGGCTGACCGGGCTAAGACTGAGGCTGACAAGCTGGGTAACTGGAATGCCCTAGCAGGCACCATTGATTCAGTAAGTGGCCCTAACGTTTCATGGAAAGGAATCATATCAGCACCGTCTGTACGTGCAACCAGTAACGCAGGGTACATCTTAATGGAACCTAACGCCAACAACCCGGCGCTGACACCTATCATCACCTTTAAGGGATTCCGTGGGAACCCTGATGCTAACGTGATGTGGATTGGTGGGGACACTGGAGACTCAGGTGCGGCGATGGCGCATGGGATGTTCTCAGTGAACACTGGACAACACTTCCAGTTCAACGTTGACGGGTCAAGTCATATCGGGTCTATGAACAATAGCGCATCGATTCTACTAGGGCCTCCGAGTTCCCCTAACATGACCTTATCGACCCTTAATGGGAACGGTATAGTGAACGTGGAAGGGAGCATGAGCGTGTCCGGTGTGATTGAGTCTCGTGCTATCGAGCTGGGTAAGCCCGGCGCGCCACCATTCATTGACTTCCATAGCAGCGATGTACCAGTGGACTATAACGTCCGTGTGATTGCTTATAATGCGCCAGATGCAGCAACTACTGGTCGTGGTCAATTGTTCATTGAAGCAGCCAGCGGCCTTGTGACCTCGCATGATGTGGAGGCTCGTGGTGCAGTCTACTCAGGTGGGCTTAGTGGTGGTAAGCTGACCAGTACGGGTAACATTGAGGGGTCTGAATGGGGTTCACGAACTCTTAAAGGCTACGTCGATGATTCTCGTAAAGCTTCCCTCCATGCATCCCCTCTGCGTATGTTATGGCGTAGAGACATTGGCACGTTCAATAACGGCTTCGACTCGAATGGTTATCCTCTACCAGCGGACGCCTCAAGACCTCTTACGGTTCGACCATGGGGTGCAGGCCAGTCGTACACGTTCAGTGAGCCTCTATGGGGCAAGCAGTTGTTCTCTATCCATAGTGATAGCTTCGAAGGGATGAACTCCGGTCAGAACCAGTTTAACTTCTGCCGCGATTGGGGTGCAATCCCTCGCATGGTCGGAGTGACGGCTAAGGCTGATAATGGGAACGTGATTACCTTCACGAGCTTTGAGATAGCGGTAAGCAATGAATGGTGGCGCTTCGCACTGAGTCAGGACGGTCTGACGCTGGCAGTTGTGCGCACAGGCAGTCTTGCTCGTCCTATCTATGCGCTATACATTGCAGACATTCCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1293e38a24f39e2c0e103670ce1e4c2db49b621524c132245d6df5f3f36be302
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7393
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50