Phage RBP Database

Genbank accession

XYH49946.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect

Probability 0,90

TF

Evidence RBPdetect2

Probability 0,87

Seq2Symm

C6 confidence 0,842

C6	0,842
C3	0,467
C7-C9	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MATNIRTVITYALDGSKTDFTIPFEYLARKFVVVTLIGVDRRELVLTTDYRFATKTVISTTIAWGAAQGYTSIEIRRFTSATERLVDFTDGSILRAYDLNVSQLQTIHVAEEARDMTAETIGVNNDGNLDARGRRIVNVADAVDSGDAINLGQVLQQNQNAWQARDEALGFRNEAEGFRNVAIDRANVATQQAAVATDRANVATHRAADAEFQANRATQMNSEASFWNSLARRWASEETNIVVENGLYSARHYAILAASYRDNAVAAAIAASNEASRSKTEADRAKTEADKLGNWNALAGTIDSVSGPNVSWKGIISAPSVRATSNAGYILMEPNANNPALTPIITFKGFRGNPDANVMWIGGDTGDSGAAMAHGMFSVNTGQHFQFNVDGSSHIGSMNNSASILLGPPSSPNMTLSTLNGNGIVNVEGSMSVSGVIESRAIELGKPGAPPFIDFHSSDVPVDYNVRVIAYNAPDAATTGRGQLFIEAASGLVTSHDVEARGAVYSGGLSGGKLTSTGNIEGSEWGSRTLKGYVDDSRKASLHASPLRMLWRRDIGTFNNGFDSNGYPLPADASRPLTVRPWGAGQSYTFSEPLWGKQLFSIHSDSFEGMNSGQNQFNFCRDWGAIPRMVGVTAKADNGNVITFTSFEIAVSNEWWRFALSQDGLTLAVVRTGSLARPIYALYIADIP

Physico‐chemical properties

protein length:	688 AA
molecular weight:	73992,36420 Da
isoelectric point:	5,44730
aromaticity:	0,08576
hydropathy:	-0,21497

Domain architecture

XYH49946.1

1 688 aa

ATT 1–131 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR005604
ATT

IPR005604

XYH49946.1

1688 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0264
STR

DC_0264

XYH49946.1

1688 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR005604	ATT	DC_0240	1	131	InterPro cluster	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Central	Medium	Text match	1326 proteins / 1328 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XYH49946.1

1 688 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	476	476	0,5767
Central domain	477	675	200	0,2808
C-terminal	676	688	12	0,9937

Note: Constraints were applied during segmentation.
Fixed 124 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pectobacterium phage JJY1 [NCBI] · taxon 3415715

Pectobacterium phage JJY1

Host

Pectobacterium carotovorum [NCBI] · taxon 554

Pseudomonadota Gammaproteobacteria Enterobacterales Pectobacteriaceae Pectobacterium Pectobacterium carotovorum

Genbank protein accession

XYH49946.1 [NCBI]

Genbank nucleotide accession

PV433195.1 [NCBI]

CDS location

range 32855 -> 34921
strand +

CDS

ATGGCTACAAACATTAGAACAGTCATAACTTATGCTCTGGACGGCTCAAAGACAGACTTTACGATACCCTTTGAGTATCTAGCCCGTAAGTTCGTAGTGGTCACACTTATTGGTGTAGACCGCCGTGAGTTGGTCTTAACGACCGACTACAGGTTCGCAACCAAGACGGTTATCTCAACGACTATCGCTTGGGGTGCGGCACAAGGTTATACCTCAATTGAGATTCGTCGATTCACATCAGCCACTGAGAGATTAGTGGACTTTACTGATGGTTCTATCTTAAGGGCTTATGACCTTAATGTATCTCAGTTACAGACCATTCATGTTGCTGAGGAAGCGCGTGATATGACAGCAGAGACTATTGGTGTTAACAATGATGGTAACCTTGACGCTCGTGGTCGTCGTATTGTTAATGTTGCAGATGCAGTTGATTCAGGGGACGCCATTAACTTAGGTCAGGTCTTACAGCAGAACCAGAACGCATGGCAGGCTCGTGATGAGGCTTTAGGCTTCCGTAATGAAGCTGAAGGTTTCCGTAATGTTGCTATAGACCGTGCGAACGTAGCGACTCAACAGGCAGCAGTGGCAACCGACCGGGCTAACGTGGCGACCCATCGTGCAGCAGACGCAGAGTTCCAAGCTAATCGCGCCACTCAGATGAACTCTGAGGCGTCTTTCTGGAACTCACTGGCTCGTCGCTGGGCGTCAGAGGAGACCAATATAGTCGTGGAGAATGGTCTGTATTCAGCACGCCATTATGCCATCCTAGCGGCTAGCTATCGGGACAATGCTGTGGCGGCCGCTATTGCAGCCAGTAATGAGGCATCCCGCTCCAAGACTGAGGCTGACCGGGCTAAGACTGAGGCTGACAAGCTGGGTAACTGGAATGCCCTAGCAGGCACCATTGATTCAGTAAGTGGCCCTAACGTTTCATGGAAAGGAATCATATCAGCACCGTCTGTACGTGCAACCAGTAACGCAGGGTACATCTTAATGGAACCTAACGCCAACAACCCGGCGCTGACACCTATCATCACCTTTAAGGGATTCCGTGGGAACCCTGATGCTAACGTGATGTGGATTGGTGGGGACACTGGAGACTCAGGTGCGGCGATGGCGCATGGGATGTTCTCAGTGAACACTGGACAACACTTCCAGTTCAACGTTGACGGGTCAAGTCATATCGGGTCTATGAACAATAGCGCATCGATTCTACTAGGGCCTCCGAGTTCCCCTAACATGACCTTATCGACCCTTAATGGGAACGGTATAGTGAACGTGGAAGGGAGCATGAGCGTGTCCGGTGTGATTGAGTCTCGTGCTATCGAGCTGGGTAAGCCCGGCGCGCCACCATTCATTGACTTCCATAGCAGCGATGTACCAGTGGACTATAACGTCCGTGTGATTGCTTATAATGCGCCAGATGCAGCAACTACTGGTCGTGGTCAATTGTTCATTGAAGCAGCCAGCGGCCTTGTGACCTCGCATGATGTGGAGGCTCGTGGTGCAGTCTACTCAGGTGGGCTTAGTGGTGGTAAGCTGACCAGTACGGGTAACATTGAGGGGTCTGAATGGGGTTCACGAACTCTTAAAGGCTACGTCGATGATTCTCGTAAAGCTTCCCTCCATGCATCCCCTCTGCGTATGTTATGGCGTAGAGACATTGGCACGTTCAATAACGGCTTCGACTCGAATGGTTATCCTCTACCAGCGGACGCCTCAAGACCTCTTACGGTTCGACCATGGGGTGCAGGCCAGTCGTACACGTTCAGTGAGCCTCTATGGGGCAAGCAGTTGTTCTCTATCCATAGTGATAGCTTCGAAGGGATGAACTCCGGTCAGAACCAGTTTAACTTCTGCCGCGATTGGGGTGCAATCCCTCGCATGGTCGGAGTGACGGCTAAGGCTGATAATGGGAACGTGATTACCTTCACGAGCTTTGAGATAGCGGTAAGCAATGAATGGTGGCGCTTCGCACTGAGTCAGGACGGTCTGACGCTGGCAGTTGTGCGCACAGGCAGTCTTGCTCGTCCTATCTATGCGCTATACATTGCAGACATTCCGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)