Protein

View in Explore
Genbank accession
AVI04965.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,99
Seq2Symm
C3 confidence 0,996
C3 0,996
C1 0,123
C6 0,001
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MFRIDGPGATNDNKFTEGDPANGARATVVTEQWLNAVQEEIANAIEGEGLDLNKQDSAQLKGLFSGRVIRVGSVGEGFANVKAIDGFQYIPYGFYENTPLGMPAFRFKGSYAKSMHDGFNFVSPTVPPISQQSGASLKERRDNFLAGAGETDPSGNGVFVAGGEIVVPEYYGAFGTGSVGEEDDAAVYAALNSQFYRAVGNPSATYLMAGQCDVNSQIDFCLAGAAFDFQLTETVAAFYVKFDFVEIHGGTITVTGSGGAETGGNGHSLNCITSGVQLTGEGWKNLKFHDLTVTTNRTDAGAHIGLMGECSRVKIYNITAPDNPVAKNVIGIEWGGNAGGSGDTGHPHDIEVKNIVVGKFTYGGATPLFGFAVWVSSAFNVKIENIFVEEAYGAVRFYSGDKANDFAPARYKDLVGTGITAKNVGIVACIGRAIQVTGTGNSTTTILDLPVKVDGLQASAAPGSADARGFDGEQFNGVEIKRFKFSGFRFGINSRALSNNLVLQDGDVEDSGANGAFIGASGSECYNPILRNVRFKRNNQSGGTTVSNAAVRYINTTGGGVIGCTFGEEGEIETQKYSVYFEGSCRNPEISGNFTWDHVAGGFSYIIGGTKDDTQINAHGRNNRSAPGVANHASAPIFDIQTDGTRHFAADGIPGQGTFAVGDKVWFTGPLATEWVGATCVTAGSPGDWKRFGQVEA
Physico‐chemical
properties
protein length:697 AA
molecular weight: 73390,32820 Da
isoelectric point:4,98901
aromaticity:0,10473
hydropathy:-0,18465

Domains

View on InterPro
Domain architecture
AVI04965.1
1 697 aa
STR 202–429 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
AVI04965.1
1 697 aa
Domain Start End Length (AA) Confidence
N-terminal 1 179 179 0,9848
Central domain 180 640 462 0,9902
C-terminal 641 697 56 0,9631
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Alteromonadaceae phage B23 [NCBI] · taxon 2094572
Uroviricota Caudoviricetes Alteromonadaceae phage B23
Host
Alteromonadaceae [NCBI] · taxon 72275
Pseudomonadota Gammaproteobacteria Alteromonadales Alteromonadaceae

Coding sequence (CDS)

Genbank protein accession
AVI04965.1 [NCBI]
Genbank nucleotide accession
KY939598.1 [NCBI]
CDS location
range 32405 -> 34498
strand +
CDS
ATGTTTCGTATTGATGGTCCAGGGGCGACGAATGACAACAAGTTCACCGAGGGCGATCCTGCGAATGGGGCGCGGGCAACGGTAGTTACCGAACAGTGGTTGAATGCGGTCCAGGAGGAAATAGCGAACGCGATAGAGGGCGAAGGCTTGGACCTCAATAAACAGGATTCTGCTCAGTTGAAAGGTCTTTTTTCAGGTCGCGTCATCCGTGTCGGGAGTGTTGGGGAAGGTTTTGCTAACGTGAAAGCCATTGATGGTTTCCAGTACATCCCTTATGGATTTTACGAAAATACACCGCTGGGAATGCCTGCGTTTCGCTTTAAGGGCAGCTACGCCAAGTCTATGCACGACGGATTTAATTTCGTTTCGCCGACGGTCCCGCCTATTAGTCAGCAGTCCGGCGCAAGCCTGAAAGAACGCCGCGACAACTTTCTGGCGGGCGCTGGTGAAACAGATCCCAGTGGCAACGGCGTTTTTGTCGCTGGCGGTGAGATTGTCGTCCCTGAGTATTACGGTGCTTTCGGTACTGGTTCGGTCGGCGAAGAGGACGACGCGGCGGTTTACGCGGCTCTTAACTCCCAATTTTATAGAGCGGTCGGCAACCCGTCGGCGACTTATCTAATGGCTGGCCAGTGTGACGTTAACAGCCAGATTGATTTTTGCTTGGCCGGTGCGGCGTTCGACTTCCAGCTAACGGAAACCGTGGCGGCCTTCTACGTAAAATTCGATTTTGTCGAGATTCACGGCGGTACGATTACCGTTACAGGATCTGGCGGTGCTGAAACTGGCGGGAACGGCCATTCTCTAAACTGTATAACGTCTGGCGTTCAGTTGACCGGGGAGGGGTGGAAAAATCTTAAATTCCACGACTTGACCGTGACAACGAATCGGACTGACGCTGGGGCTCATATTGGCCTTATGGGAGAGTGCTCCCGTGTCAAAATTTACAACATTACCGCGCCAGATAACCCGGTTGCTAAAAACGTAATCGGTATCGAATGGGGCGGCAATGCCGGCGGATCTGGGGACACCGGTCACCCGCACGACATTGAAGTAAAAAATATCGTTGTAGGAAAGTTCACCTACGGCGGAGCTACTCCGTTATTCGGATTCGCGGTTTGGGTTTCGTCGGCGTTCAATGTGAAAATAGAAAATATATTTGTAGAAGAGGCTTACGGGGCGGTTCGATTTTATTCCGGTGATAAGGCTAACGATTTTGCGCCGGCGCGTTATAAGGATCTCGTCGGGACCGGGATAACCGCGAAAAACGTCGGAATTGTCGCTTGTATCGGTCGCGCGATCCAAGTAACTGGGACCGGCAACTCAACAACGACAATTCTCGATCTGCCGGTCAAAGTGGACGGTCTGCAAGCATCTGCAGCGCCCGGCTCCGCAGATGCGAGAGGATTCGACGGTGAGCAATTTAACGGCGTCGAAATAAAGCGTTTCAAGTTCTCCGGTTTTCGCTTCGGTATAAACTCGCGGGCACTCTCTAATAATCTTGTGCTACAGGACGGGGACGTCGAGGATTCCGGTGCTAACGGAGCCTTTATAGGTGCGAGCGGTTCAGAGTGCTATAACCCGATACTCCGTAACGTACGGTTTAAGCGTAATAATCAGAGTGGGGGAACAACGGTTTCTAACGCGGCGGTACGCTACATAAATACTACTGGTGGCGGCGTTATTGGATGCACTTTTGGGGAAGAAGGCGAGATCGAAACACAAAAATATTCCGTTTACTTCGAGGGCTCTTGTCGAAACCCTGAAATTAGCGGTAATTTTACTTGGGACCATGTCGCTGGCGGTTTCAGCTATATTATAGGCGGAACAAAAGATGACACCCAGATAAACGCGCATGGCCGAAATAATCGGTCCGCTCCGGGGGTAGCCAACCATGCCAGCGCCCCAATTTTCGATATTCAGACCGATGGTACTCGGCACTTTGCGGCCGATGGTATTCCCGGGCAAGGGACGTTCGCGGTAGGCGATAAGGTGTGGTTTACCGGCCCCTTGGCTACCGAGTGGGTAGGCGCTACGTGCGTGACCGCAGGTTCGCCGGGAGATTGGAAACGGTTTGGGCAAGTCGAGGCGTAA

Genome Context

Tertiary structure

AVI04965.1
ESMFold structure
Source ESMFold
pLDDT 81.3
Oligomeric state monomer
Download structure

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Alteromonadaceae Phage B23 Min,Z. 2018-09-14 — GenBank