Protein

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Genbank accession
AVI04965.1 [GenBank]
Protein name
short tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MFRIDGPGATNDNKFTEGDPANGARATVVTEQWLNAVQEEIANAIEGEGLDLNKQDSAQLKGLFSGRVIRVGSVGEGFANVKAIDGFQYIPYGFYENTPLGMPAFRFKGSYAKSMHDGFNFVSPTVPPISQQSGASLKERRDNFLAGAGETDPSGNGVFVAGGEIVVPEYYGAFGTGSVGEEDDAAVYAALNSQFYRAVGNPSATYLMAGQCDVNSQIDFCLAGAAFDFQLTETVAAFYVKFDFVEIHGGTITVTGSGGAETGGNGHSLNCITSGVQLTGEGWKNLKFHDLTVTTNRTDAGAHIGLMGECSRVKIYNITAPDNPVAKNVIGIEWGGNAGGSGDTGHPHDIEVKNIVVGKFTYGGATPLFGFAVWVSSAFNVKIENIFVEEAYGAVRFYSGDKANDFAPARYKDLVGTGITAKNVGIVACIGRAIQVTGTGNSTTTILDLPVKVDGLQASAAPGSADARGFDGEQFNGVEIKRFKFSGFRFGINSRALSNNLVLQDGDVEDSGANGAFIGASGSECYNPILRNVRFKRNNQSGGTTVSNAAVRYINTTGGGVIGCTFGEEGEIETQKYSVYFEGSCRNPEISGNFTWDHVAGGFSYIIGGTKDDTQINAHGRNNRSAPGVANHASAPIFDIQTDGTRHFAADGIPGQGTFAVGDKVWFTGPLATEWVGATCVTAGSPGDWKRFGQVEA
Physico‐chemical
properties
protein length:697 AA
molecular weight: 73390,32820 Da
isoelectric point:4,98901
aromaticity:0,10473
hydropathy:-0,18465

Domains

Domains [InterPro]
DC_0512
STR
1–333
DC_0512 DC_0276
IPR011050
STR
202–429
IPR011050
AVI04965.1
1 697
Architecture
STR
RBD
STR 1-429 | RBD 595-697
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AVI04965.1
1 697
Domain Start End Length (AA) Confidence
N-terminal 1 179 179 0,9848
Central domain 180 640 462 0,9902
C-terminal 641 697 56 0,9631
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-179
Central
180-640
C-terminal
641-697

Taxonomy

  Name Taxonomy ID Lineage
Phage Alteromonadaceae phage B23
[NCBI] 		2094572 No lineage information
Host Alteromonadaceae
[NCBI] 		72275 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVI04965.1 [NCBI]
Genbank nucleotide accession
KY939598.1 [NCBI]
CDS location
range 32405 -> 34498
strand +
CDS
ATGTTTCGTATTGATGGTCCAGGGGCGACGAATGACAACAAGTTCACCGAGGGCGATCCTGCGAATGGGGCGCGGGCAACGGTAGTTACCGAACAGTGGTTGAATGCGGTCCAGGAGGAAATAGCGAACGCGATAGAGGGCGAAGGCTTGGACCTCAATAAACAGGATTCTGCTCAGTTGAAAGGTCTTTTTTCAGGTCGCGTCATCCGTGTCGGGAGTGTTGGGGAAGGTTTTGCTAACGTGAAAGCCATTGATGGTTTCCAGTACATCCCTTATGGATTTTACGAAAATACACCGCTGGGAATGCCTGCGTTTCGCTTTAAGGGCAGCTACGCCAAGTCTATGCACGACGGATTTAATTTCGTTTCGCCGACGGTCCCGCCTATTAGTCAGCAGTCCGGCGCAAGCCTGAAAGAACGCCGCGACAACTTTCTGGCGGGCGCTGGTGAAACAGATCCCAGTGGCAACGGCGTTTTTGTCGCTGGCGGTGAGATTGTCGTCCCTGAGTATTACGGTGCTTTCGGTACTGGTTCGGTCGGCGAAGAGGACGACGCGGCGGTTTACGCGGCTCTTAACTCCCAATTTTATAGAGCGGTCGGCAACCCGTCGGCGACTTATCTAATGGCTGGCCAGTGTGACGTTAACAGCCAGATTGATTTTTGCTTGGCCGGTGCGGCGTTCGACTTCCAGCTAACGGAAACCGTGGCGGCCTTCTACGTAAAATTCGATTTTGTCGAGATTCACGGCGGTACGATTACCGTTACAGGATCTGGCGGTGCTGAAACTGGCGGGAACGGCCATTCTCTAAACTGTATAACGTCTGGCGTTCAGTTGACCGGGGAGGGGTGGAAAAATCTTAAATTCCACGACTTGACCGTGACAACGAATCGGACTGACGCTGGGGCTCATATTGGCCTTATGGGAGAGTGCTCCCGTGTCAAAATTTACAACATTACCGCGCCAGATAACCCGGTTGCTAAAAACGTAATCGGTATCGAATGGGGCGGCAATGCCGGCGGATCTGGGGACACCGGTCACCCGCACGACATTGAAGTAAAAAATATCGTTGTAGGAAAGTTCACCTACGGCGGAGCTACTCCGTTATTCGGATTCGCGGTTTGGGTTTCGTCGGCGTTCAATGTGAAAATAGAAAATATATTTGTAGAAGAGGCTTACGGGGCGGTTCGATTTTATTCCGGTGATAAGGCTAACGATTTTGCGCCGGCGCGTTATAAGGATCTCGTCGGGACCGGGATAACCGCGAAAAACGTCGGAATTGTCGCTTGTATCGGTCGCGCGATCCAAGTAACTGGGACCGGCAACTCAACAACGACAATTCTCGATCTGCCGGTCAAAGTGGACGGTCTGCAAGCATCTGCAGCGCCCGGCTCCGCAGATGCGAGAGGATTCGACGGTGAGCAATTTAACGGCGTCGAAATAAAGCGTTTCAAGTTCTCCGGTTTTCGCTTCGGTATAAACTCGCGGGCACTCTCTAATAATCTTGTGCTACAGGACGGGGACGTCGAGGATTCCGGTGCTAACGGAGCCTTTATAGGTGCGAGCGGTTCAGAGTGCTATAACCCGATACTCCGTAACGTACGGTTTAAGCGTAATAATCAGAGTGGGGGAACAACGGTTTCTAACGCGGCGGTACGCTACATAAATACTACTGGTGGCGGCGTTATTGGATGCACTTTTGGGGAAGAAGGCGAGATCGAAACACAAAAATATTCCGTTTACTTCGAGGGCTCTTGTCGAAACCCTGAAATTAGCGGTAATTTTACTTGGGACCATGTCGCTGGCGGTTTCAGCTATATTATAGGCGGAACAAAAGATGACACCCAGATAAACGCGCATGGCCGAAATAATCGGTCCGCTCCGGGGGTAGCCAACCATGCCAGCGCCCCAATTTTCGATATTCAGACCGATGGTACTCGGCACTTTGCGGCCGATGGTATTCCCGGGCAAGGGACGTTCGCGGTAGGCGATAAGGTGTGGTTTACCGGCCCCTTGGCTACCGAGTGGGTAGGCGCTACGTGCGTGACCGCAGGTTCGCCGGGAGATTGGAAACGGTTTGGGCAAGTCGAGGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8af44a7207f05d20e657a56898e2537fd000cb3c37d51625b82e7c05a17eacac
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8129
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Alteromonadaceae Phage B23 Min,Z. 2018-09-14 — GenBank