Phage RBP Database

Genbank accession

UGO52031.1 [GenBank]

Protein name

central tail fiber J

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,88

TF

Evidence RBPdetect2

Probability 0,87

Seq2Symm

C3 confidence 0,139 truncated

C3	0,139
C1	0,024
D2	0,004

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MGKGGGGKARTPVEDKDTIESSQMISVIDLWSEGQIYGLVDGLKSVLLDNTAVVAKDGSVNIPGVDISYNLGTEDQEYLDGFPQNASEISVGVEVKQSAPVIRTITDPRIDMLRINLYSRALFVITNDGDTKRTDLKMRVETRKGSEPWEVKARIDFIDQKSRNEFSFKAEIWDLPAAPFDVRVVRETSDDQTGDFQQIQNSSFWRSYSQVINQKYRWPLTAYMGLKFDSKSFEGAIPRRNYIVRGMIVKVPTNYDPETRKYNGFWNGQFKAAYTNNPAWIVYDIIKNPRYGLGRRGINIEETEMYKAAQWCDQLVPDGRGGMEPRVTCNCYITEQRNAWDLITDIMSCFRAMPLWNGQQFVPSLDIAKDVVATYNNSNVINGTFEYSASSMEDRHSVIEVRYANKANNYEQDTVQITDDLMIEQYGWNVLKVEAFGTDTESQAYRFGSYLLETERLERKTVSFSTGAEGLRNLPGDVIAIADSRQYGRIIGGRIMSVSEDRKSIELDDEVEIPNNAETLIIVIGDDRKPVELLCTNNPGKAKVLNFSTTCPDSLGRLSPWSLKINNSGLKLWRCVSVKENDDGTYAINCVEHVPEKNEIVDNGVKFNPPEETLYGNNLPPVENISVEAIVENPNANVRVYWDTPRTARQIRYNVRIYRSGNLVTNQNIDDPSLSFMADTAGTYRAEVRCLGSDGKLGDSVDVVFVIAEPSMPSDVSWRASNFTVTLRPIPGGLVTIGEVYEWFIGSTEQEVLAMNNNLGEAFVLNQVGLKPNTEYWFGVRAVNMIGRSKIKTVLTKTAFETESLEGLINVALPKTDYIQDMNKDIEGLGELASLRVVDKNGGRPRVTGVYLNAGDAGNNIASVIDFVADAVSISSPDTLERWVYFDSTNRRLVLGGEIQAVSGRLKNVVIEENCVIEGKLSVANIEGYAMEGQSYEFNISNTGGSKTINYGGNAKIPVRLFGQVWARQRKNQKTRVTVNGKTINQMEVSVIVNNNGTVTTRTYTWLYTFVVDLNINQGAEIFVSAGALDQGNSESSTYRTQFWIAPQSNGFTSN

Physico‐chemical properties

protein length:	1055 AA
molecular weight:	117855,00120 Da
isoelectric point:	4,99475
aromaticity:	0,09100
hydropathy:	-0,37649

Domain architecture

UGO52031.1

1 1055 aa

ATT 87–213 · ATT 334–499 · STR 612–711 · ATT 712–802 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR053171
Unmapped

IPR053171

IPR055385
ATT

IPR055385 IPR032876 IPR055383 IPR057587

IPR003961
STR

IPR003961

IPR036116
STR

IPR036116

IPR003961
STR

IPR003961

UGO52031.1

11055 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0323
STR

DC_0323

UGO52031.1

11055 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR053171	Unmapped	-	3	791	InterPro	Viral Tip Attachment Protein	-	-	-	-
IPR055385	ATT	DC_0360	87	213	InterPro cluster	Tip attachment protein J, HDII-ins2 domain	N-terminal	High	Text match	1136 proteins / 1139 hits
IPR032876	ATT	DC_0307	334	499	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR055383	STR	DC_0003	612	710	InterPro cluster	Tip attachment protein J, Fn3-1 domain	Central	High	Text match	998 proteins / 1603 hits
IPR003961	STR	DC_0003	619	789	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR036116	STR	IPR036116	635	796	Merged direct domain	Fibronectin type III superfamily	Central	Low	Positional only	52 proteins / 52 hits
IPR003961	STR	DC_0003	706	802	InterPro cluster	Fibronectin type III	Central	High	Text match	998 proteins / 1603 hits
IPR057587	ATT	DC_0130	712	802	InterPro cluster	Tip attachment protein J, second Ig-like domain	Central	Medium	Text match	309 proteins / 309 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

UGO52031.1

1 1055 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	502	502	0,8666
Central domain	503	918	417	0,0457
C-terminal	919	1055	136	0,9131

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Serratia phage vB_SmaS_Ulliraptor [NCBI] · taxon 2902694

Uroviricota Caudoviricetes Bonzeevirus Bonzeevirus ulliraptor

Host

Serratia marcescens [NCBI] · taxon 615

Pseudomonadota Gammaproteobacteria Enterobacterales Yersiniaceae Serratia Serratia marcescens

Genbank protein accession

UGO52031.1 [NCBI]

Genbank nucleotide accession

OL539442.1 [NCBI]

CDS location

range 22467 -> 25634
strand +

CDS

ATGGGAAAAGGTGGAGGCGGTAAAGCAAGAACGCCCGTCGAAGACAAAGATACCATCGAGTCTAGTCAGATGATATCTGTGATTGACCTTTGGTCAGAAGGTCAGATTTATGGGCTTGTGGATGGGCTTAAAAGCGTGCTGCTTGACAACACGGCAGTGGTGGCAAAGGACGGTTCTGTAAACATTCCTGGGGTTGATATTTCATATAACCTTGGAACCGAAGACCAGGAATATCTAGACGGATTTCCGCAAAACGCTTCGGAAATAAGTGTTGGCGTAGAGGTAAAACAATCAGCGCCAGTAATCAGGACTATTACAGACCCGCGAATCGATATGCTACGCATAAATCTTTATAGTCGCGCACTGTTTGTAATAACGAATGATGGAGACACTAAGCGCACGGATTTAAAAATGCGCGTAGAGACCAGGAAAGGCTCTGAGCCTTGGGAGGTAAAGGCGCGTATTGACTTCATAGACCAGAAATCAAGAAATGAGTTTTCTTTCAAGGCTGAAATATGGGATTTACCGGCTGCGCCATTTGACGTGCGAGTAGTTCGCGAAACGTCAGACGACCAGACCGGTGACTTCCAGCAGATTCAAAATTCATCTTTCTGGCGTTCTTATTCGCAGGTTATTAACCAAAAATATCGATGGCCTTTAACTGCGTATATGGGTCTTAAATTTGACTCCAAATCATTTGAGGGCGCAATACCTCGAAGAAATTATATTGTTCGCGGAATGATTGTTAAGGTTCCTACAAACTACGACCCGGAAACCAGGAAGTATAACGGATTCTGGAACGGTCAGTTTAAGGCGGCCTACACAAATAACCCGGCGTGGATTGTTTACGATATTATCAAAAACCCACGTTACGGCCTTGGTCGTCGCGGAATTAATATCGAAGAAACGGAAATGTACAAGGCCGCGCAATGGTGTGACCAGCTTGTGCCTGATGGGCGTGGTGGAATGGAGCCTAGGGTTACATGCAATTGCTATATCACCGAACAGAGAAATGCGTGGGACTTAATAACCGATATAATGAGCTGCTTCCGAGCGATGCCGTTATGGAACGGTCAGCAATTTGTGCCGTCTCTTGATATTGCGAAAGACGTTGTAGCTACATATAACAATTCAAACGTAATTAACGGCACGTTTGAATATAGCGCTTCGTCTATGGAAGACCGCCACTCAGTTATAGAAGTTCGTTACGCAAATAAAGCGAATAACTATGAACAGGACACTGTTCAAATAACTGACGACTTGATGATAGAGCAATACGGCTGGAACGTGTTAAAGGTTGAGGCTTTTGGTACTGATACCGAATCACAGGCTTACCGCTTCGGCTCTTATTTGCTTGAAACTGAAAGGCTGGAAAGGAAGACCGTTTCCTTCTCAACTGGCGCTGAGGGTTTAAGAAACCTTCCTGGCGACGTAATAGCAATTGCTGATTCGCGCCAATACGGCCGAATTATTGGCGGCAGGATTATGTCTGTTTCGGAAGACAGAAAAAGCATCGAGCTTGATGATGAGGTTGAAATTCCTAACAACGCAGAAACTTTAATTATAGTTATCGGCGATGACAGGAAACCAGTTGAGCTTTTATGCACTAACAATCCTGGCAAGGCGAAGGTTTTGAATTTTTCCACCACTTGCCCCGATAGTTTGGGTCGCTTGTCTCCTTGGTCGCTAAAAATAAATAACAGCGGTCTAAAGCTTTGGCGCTGCGTTAGTGTTAAGGAAAATGACGATGGAACTTATGCCATTAACTGCGTTGAGCATGTGCCGGAGAAAAACGAGATTGTAGATAATGGGGTAAAATTCAATCCGCCTGAAGAAACTCTGTATGGAAATAACTTGCCGCCGGTTGAAAATATCAGCGTAGAAGCCATAGTAGAAAACCCAAACGCAAATGTTAGGGTTTATTGGGATACGCCAAGAACAGCTAGGCAGATTCGATACAATGTTAGAATCTATCGCTCGGGTAATTTGGTTACAAATCAAAATATCGACGACCCATCACTTTCTTTCATGGCAGATACGGCAGGAACTTACCGAGCAGAAGTTCGCTGTTTGGGTTCTGATGGCAAGCTGGGTGATAGCGTGGATGTTGTTTTTGTCATTGCTGAGCCTTCAATGCCTTCCGATGTTTCTTGGAGAGCATCAAACTTCACGGTTACGTTGAGGCCAATTCCTGGCGGCCTGGTTACTATTGGCGAGGTTTACGAGTGGTTTATAGGCTCAACTGAGCAAGAGGTTTTAGCTATGAATAACAACCTTGGCGAAGCTTTCGTTTTAAACCAGGTTGGGCTAAAGCCAAATACTGAATATTGGTTCGGCGTTCGAGCGGTTAATATGATTGGCCGTTCCAAGATAAAAACCGTTCTGACTAAAACCGCTTTCGAAACTGAATCTCTTGAGGGTCTTATTAACGTTGCCTTGCCAAAAACAGACTATATCCAGGACATGAACAAGGACATAGAAGGCCTTGGCGAGCTTGCGTCTCTCAGGGTTGTTGACAAAAACGGCGGAAGGCCTCGCGTAACTGGTGTTTATCTAAACGCCGGTGATGCAGGAAACAACATAGCTTCGGTGATTGATTTTGTCGCTGATGCCGTCTCAATCTCAAGCCCTGACACGCTAGAGCGCTGGGTGTACTTTGATTCAACCAACAGGCGATTGGTTCTTGGTGGTGAGATACAGGCCGTTTCTGGACGCCTCAAGAATGTTGTCATAGAAGAAAACTGCGTCATAGAAGGAAAGCTGTCAGTGGCGAACATCGAAGGCTATGCGATGGAGGGGCAAAGCTACGAGTTCAACATAAGCAACACTGGAGGAAGTAAGACCATAAACTACGGAGGAAACGCAAAGATACCTGTTAGACTGTTCGGCCAAGTGTGGGCTAGACAGCGCAAAAACCAAAAGACTAGGGTAACGGTAAACGGAAAAACCATAAACCAAATGGAGGTATCAGTTATCGTTAACAACAACGGCACGGTGACGACCAGGACTTACACCTGGCTTTATACGTTTGTTGTTGACCTTAACATAAATCAGGGGGCTGAAATCTTCGTCAGCGCCGGGGCGCTAGACCAGGGCAACAGCGAATCCTCAACATACAGGACGCAGTTTTGGATTGCCCCTCAATCCAATGGATTCACCTCTAACTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)