Phage RBP Database

Genbank accession

YP_009957535.1 [GenBank]

Protein name

minor tail protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,998

C3	0,998
C1	0,188
D3	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAYDKQAWQNAPSTETPLSAAALNHMEDGIADAHDLAESKADGEHTHVLADVTDVVATADEVNFLSGATVSTAELNALDGVTSNVQTQLDGKAATSHTHAASAITSGTLSIDRIPIGNSGSTVCVGNDSRLSDQRVPVDGSVTSAKYASGSITNAHVSPSAGIVASKMSTGVQASLAKADGSVQKSGTAEGLWMGTTLPGTGTAGVLYVVVP

Physico‐chemical properties

protein length:	212 AA
molecular weight:	21304,15410 Da
isoelectric point:	4,69748
aromaticity:	0,02830
hydropathy:	-0,05377

Domain architecture

YP_009957535.1

1 212 aa

STR 30–59 · STR 83–106 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

PF12789
STR

PF12789 PF12789

YP_009957535.1

1212 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1940
STR

DC_1940

YP_009957535.1

1212 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
PF12789	STR	DC_0212	30	59	InterPro cluster	PF12789	C-terminal	Low	Positional only	31 proteins / 33 hits
PF12789	STR	DC_0212	83	106	InterPro cluster	PF12789	C-terminal	Low	Positional only	31 proteins / 33 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009957535.1

1 212 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	105	105	0,9777
Central domain	106	201	97	0,0481
C-terminal	202	212	10	0,9900

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Mycobacterium phage Gandalph [NCBI] · taxon 2767557

Uroviricota Caudoviricetes Cheoctovirus Cheoctovirus gandalph

Host

Mycobacterium smegmatis str. MC2 155 [NCBI] · taxon 246196

Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium smegmatis

Genbank protein accession

YP_009957535.1 [NCBI]

Genbank nucleotide accession

NC_051662 [NCBI]

CDS location

range 23727 -> 24365
strand +

CDS

ATGGCTTACGACAAGCAGGCGTGGCAGAACGCGCCATCAACGGAGACTCCGTTGTCGGCGGCAGCGTTGAATCACATGGAGGACGGTATCGCCGATGCCCACGATCTCGCCGAGAGCAAGGCAGATGGCGAGCACACACACGTGCTGGCGGATGTCACGGATGTTGTGGCAACGGCCGATGAGGTGAATTTTCTGTCGGGCGCGACGGTTTCGACCGCGGAGCTGAACGCGCTGGATGGTGTGACCTCGAATGTGCAGACCCAGTTGGACGGGAAGGCCGCCACGTCGCACACCCATGCCGCGTCGGCCATCACTTCCGGCACGTTGAGTATCGACCGTATTCCGATCGGCAACTCCGGATCGACGGTGTGTGTGGGTAACGATTCCCGCCTGTCGGATCAGCGTGTCCCGGTCGATGGTTCGGTGACGTCGGCGAAGTACGCGTCCGGGTCGATCACCAACGCCCATGTGAGCCCATCGGCGGGGATTGTGGCGTCGAAAATGTCGACCGGTGTGCAGGCGTCTCTCGCCAAGGCGGATGGGTCGGTGCAGAAGTCCGGCACCGCTGAGGGCCTGTGGATGGGAACCACCCTACCCGGTACCGGCACGGCAGGTGTGTTGTACGTGGTGGTGCCGTGA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)