Protein

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Genbank accession
YP_009196393.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MKFAEIRGSGLGSVIAENNSTKYYIKVTGSHSDLATENRISEVVINDSVISVSPLRGMNIQRFDNNMQFVESRSFDLYGSLTEQSSIMSEYIRSVTSGVLILYSYDAMGNNTVINELMKIYGASAWPWHINSTKRFAWCGIIDCKNSNMISDAMGGLGNSYFASLDYYIDTMEDMGVTGAGNVIIQDPNEYSGKQYLVKTYMEKTPLSELKQLKVGEWIYLRADLMHDNESVTNKITGVMTVQFYDQTSSYLKGITIRSNSTSYKTIEARSDIPANAFYVDIKYLHSPSGSDGTGTVSIKNVVVQPIAKEIVKNKPARLGRYTAPAREFREGTTTGNTVVRFTKDELIEASEMQEILGNEWIKVFEHRTLNGPYLFEDLQQALYSEIPYLYSNMKEINDFRLKDGKWRFKLVYDEGHIVWEQSSSPELSTVTGLKIIETTLSADSRPFGGIRRTVNDTNSRYDCNTGSTWYYAIGAIAVYGSGFPGPKGTVNSVQLYAWKE
Physico‐chemical
properties
protein length:501 AA
molecular weight: 56279,76970 Da
isoelectric point:5,61276
aromaticity:0,10978
hydropathy:-0,33992

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009196393.1
1 501
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,4102
Central domain 57 263 208 0,6469
C-terminal 264 501 237 0,4066
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-56
Central
57-263
C-terminal
264-501

Taxonomy

  Name Taxonomy ID Lineage
Phage Cronobacter phage S13
[NCBI] 		1327935 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Cronobacter sakazakii
[NCBI] 		28141 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009196393.1 [NCBI]
Genbank nucleotide accession
NC_028773 [NCBI]
CDS location
range 8039 -> 9544
strand -
CDS
ATGAAATTTGCAGAAATTCGAGGCTCCGGCCTCGGTTCTGTTATCGCTGAAAACAACAGCACAAAATATTACATTAAGGTGACCGGATCTCATTCAGACCTAGCCACCGAAAATCGTATTAGTGAAGTTGTAATTAACGATAGCGTAATCAGCGTTTCTCCTTTAAGAGGAATGAACATCCAGCGTTTTGATAACAATATGCAATTTGTTGAAAGTAGAAGTTTTGATCTTTACGGTAGTTTAACCGAACAGTCTTCTATTATGAGCGAATACATTCGTTCTGTGACATCAGGAGTTCTTATTCTGTATTCATACGATGCAATGGGAAATAACACAGTCATAAACGAATTGATGAAAATCTATGGCGCTTCTGCTTGGCCTTGGCATATCAATTCAACAAAAAGATTTGCATGGTGTGGAATTATAGATTGCAAAAACAGTAATATGATCTCAGATGCGATGGGAGGATTGGGAAATAGTTATTTCGCGTCGTTGGATTATTACATAGACACGATGGAAGATATGGGTGTTACAGGTGCTGGTAATGTTATTATTCAAGATCCTAATGAGTATTCAGGAAAACAGTATCTCGTCAAGACTTATATGGAAAAAACTCCTCTGTCAGAATTAAAACAGCTTAAAGTAGGAGAATGGATTTATCTGAGAGCCGATTTAATGCATGACAATGAATCGGTGACAAATAAAATAACAGGTGTTATGACCGTTCAGTTTTACGATCAGACTAGCTCATATCTGAAAGGAATAACAATTCGTTCTAATTCAACATCTTACAAAACTATTGAAGCTAGATCTGATATTCCAGCGAATGCCTTTTATGTTGATATTAAGTATTTGCATAGTCCATCGGGTTCAGACGGAACCGGAACAGTTTCAATTAAAAACGTTGTCGTTCAACCGATCGCAAAAGAAATCGTCAAGAATAAACCAGCTCGTCTGGGACGATATACTGCACCAGCTCGTGAATTCCGCGAAGGGACTACAACAGGAAACACAGTTGTTAGATTTACTAAAGACGAACTCATCGAAGCGTCGGAAATGCAGGAGATACTGGGAAATGAATGGATAAAAGTGTTTGAGCACAGAACATTGAACGGTCCTTATTTGTTTGAAGATCTTCAACAGGCACTTTATTCTGAAATTCCTTATTTGTATAGCAACATGAAAGAAATCAACGATTTTAGACTTAAAGACGGAAAATGGAGATTTAAACTCGTATACGATGAAGGACATATTGTATGGGAACAAAGTTCGTCTCCTGAACTATCGACTGTCACTGGATTAAAAATAATTGAAACAACACTTTCGGCAGACTCTAGACCTTTCGGGGGAATCAGAAGAACGGTGAACGATACAAACTCTCGATATGACTGTAATACAGGTTCAACATGGTATTATGCAATAGGTGCCATAGCAGTTTATGGAAGTGGATTTCCTGGACCGAAAGGAACTGTAAATAGTGTTCAGCTATACGCATGGAAGGAGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
65a7b34825c619003b5fab2a57c48fa67314e5648f7e27937332b5def35a5cbc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5768
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Cronobacter sakazakii Bacteriophage S13 Kim,Y., Shin,H. and Ryu,S. 2012-06 — GenBank