Phage RBP Database

Genbank accession

XNM21673.1 [GenBank]

Protein name

tailspike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 1,000

C3	1,000
D3	0,012
O	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MGLHLWGQNVSINITGCHFRRDHYSTLGNTFGIRIQPRVYAWSPDQSSGSRSEAIVIDGETMCISVDYGIYVDDCLDLQMSNLDLDYIRKNAVSIINVNGGFNLSDSWIAGDGESTEQFFAVSLNANAIQQQKSITGLHCNLHNANPLNNNIGINIAGQNVGPVYIGQSTFVGGWSGIAIFNHTSGGIVIDSCTLANQLYLTGSSDVVVQNSGLTGIEETFKPSNSHHYYRSNRGTPATNGIVNVPVASGATSGTLTIPNADTTKSYSVRPWVVDPATANDTASCSAGVITVNRPIAVGIPLPSTVEYSLF

Physico‐chemical properties

protein length:	311 AA
molecular weight:	33178,52850 Da
isoelectric point:	5,19715
aromaticity:	0,08039
hydropathy:	-0,05177

Domain architecture

XNM21673.1

1 311 aa

STR 1–311

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334

IPR049104
RBD

IPR049104

XNM21673.1

1311 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	1	311	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR049104	RBD	DC_0399	240	308	InterPro cluster	Tail spike protein-like, C-terminal domain	C-terminal	High	Text match	5 proteins / 5 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XNM21673.1

1 311 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	10	10	0,0069
Central domain	11	232	223	0,9782
C-terminal	233	311	78	0,9746

Note: Constraints were applied during segmentation.
Sequence started with non-N-terminal domain|N-terminal too short, forced to 10 residues

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Shigella phage Moonfish [NCBI] · taxon 3384869

Uroviricota Caudoviricetes Schitoviridae Gamaleyavirus Gamaleyavirus moonfish

Host

Shigella flexneri [NCBI] · taxon 623

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri

Genbank protein accession

XNM21673.1 [NCBI]

Genbank nucleotide accession

PQ613263 [NCBI]

CDS location

range 39 -> 974
strand +

CDS

ATGGGGTTACATCTATGGGGGCAAAACGTTTCTATCAATATCACGGGATGCCATTTCCGCCGTGATCATTATTCTACATTGGGTAACACGTTTGGCATTCGCATCCAGCCTAGGGTGTATGCGTGGAGTCCTGACCAGAGTTCAGGATCTCGTAGTGAAGCCATCGTTATTGACGGGGAAACTATGTGTATTTCTGTAGATTATGGCATCTATGTTGATGACTGCCTGGACTTGCAGATGAGTAATCTGGATTTGGATTACATTCGAAAGAATGCCGTGTCTATTATTAACGTTAATGGTGGATTTAACCTATCAGATTCGTGGATAGCTGGCGATGGTGAGTCCACAGAGCAATTTTTTGCAGTTTCTTTAAACGCTAACGCAATCCAACAACAGAAATCAATTACTGGTTTGCACTGTAATTTGCATAATGCCAACCCCCTCAATAATAACATTGGTATTAACATTGCTGGCCAAAATGTTGGGCCTGTATATATCGGCCAGTCTACGTTTGTCGGTGGGTGGTCGGGTATAGCAATTTTTAACCATACAAGTGGGGGTATTGTTATTGATTCGTGTACTTTGGCAAATCAGTTGTACCTAACTGGTTCTAGTGATGTTGTAGTGCAAAATTCTGGATTAACTGGTATTGAGGAAACATTTAAGCCTTCCAATTCTCATCATTACTATCGTTCTAATAGAGGCACACCTGCCACTAATGGGATAGTAAATGTTCCTGTTGCTAGTGGGGCCACTTCAGGAACATTAACTATACCTAATGCAGACACAACTAAGTCGTATAGCGTTCGCCCATGGGTAGTTGACCCAGCTACTGCAAACGATACTGCTTCCTGCTCTGCTGGTGTAATTACAGTAAACAGGCCTATAGCAGTAGGTATCCCACTCCCATCTACAGTGGAATACTCTTTGTTTTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)