Phage RBP Database

Genbank accession

AGK86482.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,99

TSP

Evidence UniProt/TrEMBL

Probability 1,00

Seq2Symm

C3 confidence 1,000

C3	1,000
C1	0,061
D3	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGINDANKAVLWPKEDGGDGNYYAWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSILIDRDYNFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYAKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGAHGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSAVLYPVWDGFDLGADTDMNPEDDRPGDFPISQYPVHMLPLNHLIDNLFVRGSLGVGFGMDGQGLYVSNITVEDCAGSGAYILAHETVFTNIAIIDTNTKNFPANQIYISGACRVNGLRLVGIRSTTEQGMTVDAPNSTVSGITGFVDPSRINVANLMEEGLGNSRINSFNNDSAALRFRIHKLSKTLDSGSVYSHINGGPGSGSAWTEITAIAGSLPDAVSLKINRGDYRAVEIPVATTVLPDNAVRDNGSISLYLEGDSLKALVKRADGSYTRLTLA

Physico‐chemical properties

protein length:	684 AA
molecular weight:	72924,69790 Da
isoelectric point:	5,15668
aromaticity:	0,08918
hydropathy:	-0,16213

Domain architecture

AGK86482.1

1 684 aa

ATT 65–135 · STR 136–684

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80 IPR011050

IPR040775
RBD

IPR040775 IPR012332

IPR012332
STR

IPR012332

IPR015331
RBD

IPR015331

AGK86482.1

1684 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	65	135	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	71	132	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR011050	STR	IPR011050	135	684	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012332	STR	IPR012332	135	684	Merged direct domain	Autotransporter, pectate lyase C-like domain superfamily	Central	Low	Positional only	199 proteins / 199 hits
IPR012332	STR	IPR012332	136	684	Merged direct domain	Autotransporter, pectate lyase C-like domain superfamily	Central	Low	Positional only	199 proteins / 199 hits
IPR015331	RBD	DC_0844	138	684	InterPro cluster	P22 tailspike C-terminal domain	Central	High	Text match	401 proteins / 403 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AGK86482.1

1 684 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	155	155	0,9919
Central domain	156	594	440	0,9877
C-terminal	595	684	89	0,8567

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage L13 [NCBI] · taxon 1325963

Uroviricota Caudoviricetes Sarkviridae Jerseyvirus Jerseyvirus L13

Host

Salmonella gallinarum [NCBI] · taxon 594

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)