Protein

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Genbank accession
AGC34681.1 [GenBank]
Protein name
YadA domain protein
RBP type
TF
Evidence RBPdetect2
Probability 0,96
TF
Evidence Phold
Probability 1,00
Protein sequence
MTVSATSGTFSTTIDVTGAATFGNNVNITGTLTPGALDLSSTDVVANSLSVATTLHSDGNATIGGTLGVTGAATAPSITLNGEGTALAVTNNATIGGTLGVTGAATLGSLTTSGAVKTGSNVIIGTKIGEQPETVQIFPNTYIAGSLRVDGGINADIDVSGQTIEPYAVVAADTISAAGNITSGAELISKSATIGDVGSQNNNLTINGNVVNNGNFTVTGVLNATLNQANSDVAVKSLTATNSVAAGTSITAGTSITATGLLKGNTLEVTTTGSFGGAVTMSSGANITGTVGITSGNLTVGGDISATGTATLAATSVTTITTSGAATLASASVTGAATIGGTLTVTGLMTANGSVVLGDAAADTLTVNATSSFKENAVFDKDVTVTGQLTTTNADLTTTTVTTKKYDVIPNQVTSSVIAPTGTWTPDGTSNVYFITLDQDTTLAPITGLIGGGKASSVYIYVKQDATGNRNFTTDGTYAVVDGTLNKTANSVTIYQVIYDGVSPVTDMFIAQRTA
Physico‐chemical
properties
protein length:515 AA
molecular weight: 50606,30660 Da
isoelectric point:4,14535
aromaticity:0,03883
hydropathy:0,25087

Domains

Domains [InterPro]
IPR058970
424–503
IPR058970
AGC34681.1
1 515
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PBECO4
[NCBI] 		1273738 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli O157
[NCBI] 		1045010 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Escherichia

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGC34681.1 [NCBI]
Genbank nucleotide accession
KC295538 [NCBI]
CDS location
range 73 -> 1620
strand +
CDS
GTGACGGTATCTGCAACTTCTGGTACATTTAGTACTACAATAGATGTAACTGGTGCAGCAACCTTTGGTAATAATGTTAACATTACTGGTACATTAACGCCAGGTGCATTGGATTTATCTAGTACTGATGTAGTTGCAAACAGTCTTTCTGTTGCAACCACACTACATTCAGATGGTAATGCAACAATTGGTGGTACATTAGGTGTAACTGGTGCAGCAACTGCTCCATCAATCACTCTTAATGGTGAAGGAACTGCATTAGCAGTTACTAACAATGCAACAATTGGTGGTACATTAGGTGTAACTGGTGCAGCAACTTTAGGTTCACTAACAACTTCTGGTGCAGTGAAAACTGGTTCTAATGTTATTATTGGTACTAAGATCGGTGAACAACCAGAAACAGTTCAGATTTTCCCTAACACTTACATTGCTGGTTCCTTGCGTGTAGATGGTGGTATCAACGCTGATATTGATGTTAGTGGTCAAACAATCGAACCTTATGCAGTTGTTGCGGCTGACACTATTAGTGCAGCGGGTAATATTACTTCTGGTGCAGAGTTGATTTCTAAATCAGCAACTATTGGTGATGTTGGTTCACAAAACAACAACTTAACAATCAATGGTAACGTAGTTAACAACGGTAACTTTACAGTAACTGGTGTTCTAAACGCAACACTAAACCAAGCAAACTCTGATGTAGCTGTTAAATCATTAACTGCAACCAACAGTGTTGCTGCTGGTACTAGCATTACCGCAGGTACAAGTATTACTGCAACTGGTCTGCTAAAAGGGAACACCCTTGAAGTAACTACTACTGGTTCATTTGGTGGTGCAGTAACAATGTCAAGTGGTGCTAACATTACTGGAACCGTTGGGATTACTTCTGGTAACCTAACTGTTGGTGGTGATATTTCTGCAACAGGTACTGCAACCCTAGCAGCAACTTCAGTAACTACTATTACTACTTCTGGTGCAGCAACACTTGCTAGTGCATCTGTTACTGGAGCAGCAACAATCGGTGGTACTTTAACTGTTACTGGATTAATGACTGCAAATGGTAGTGTTGTTTTAGGTGACGCGGCTGCTGATACATTAACTGTCAATGCAACATCTTCTTTCAAAGAAAATGCAGTATTTGATAAAGATGTAACTGTAACTGGTCAATTAACAACTACTAATGCTGACTTGACTACTACAACAGTAACTACTAAAAAATATGATGTTATTCCTAATCAAGTAACTTCTTCTGTTATTGCACCAACTGGCACTTGGACCCCAGACGGTACTAGCAACGTATACTTTATCACTCTAGATCAAGATACAACTCTAGCACCAATCACTGGTCTAATCGGTGGTGGTAAAGCATCTTCAGTATACATTTATGTAAAACAAGATGCAACAGGTAATAGAAACTTTACTACTGATGGTACTTATGCGGTTGTTGATGGAACTCTAAACAAAACTGCAAACTCTGTAACTATCTACCAAGTCATTTATGACGGGGTGAGTCCAGTAACAGATATGTTTATTGCACAACGTACTGCTTAA

Tertiary structure

PDB ID
13d2393a8754be443c8abd548e870611da3eda5140fd3417d6995673534729d6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6485
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of bacteriophage PBECO4 infecting Escherichia coli O157:H7 Kim,M.S., Hong,S.S., Park,K. and Myung,H. 2013 23680925 GenBank