Phage RBP Database

Genbank accession

YP_009805449.1 [GenBank]

Protein name

straight fibre tail protein

RBP type

TSP

Evidence RBPdetect

Probability 0,87

TF

Evidence RBPdetect2

Probability 0,45

Seq2Symm

C3 confidence 0,848

C3	0,848
C1	0,729
C7-C9	0,001

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MISNNAPAKMVLNSIMTGYTMAYVQHSIYTDYDVIGRSFWLKMGESIDRRDYTGIDTFFVMINNLTPSTSYEIQGAFYDSIIDSELLEAKIGINLSNETNFKTKEKPIITAARSESEPVDVGVGAPIVVVETAGEASYCTIELKSTASEDSEWVKYYIGALGPTIKFGGVPVGDYKIRISGQVTMPDGVTVDSSGYYEYPSIFTVAYNFVPPTAPTNIAFKAARIADGKERYDVRIEWDWERGAGANVREFLVTYINSEEYAKTGWAKAQKINVGAARAATIISFPWKVEHTFKVSSIAWGPNKQDITESAPVTFILNEDTPLDNSFVNETGIDVNYAFIKGSMKDGEIWRQTFLIDAATGAINIGLLDEEGKAPISFDPINRVVNVDGKVITRDINAANFIMTNLSGKDNPAIYTQGKSWGDNNSGIWMGMDNTSAKAKLDIGNATQWIRYDGDVLRISSGVVIGTPKGDVDLGTGMQGKQTVFVYKLATSLPAKPLEQDYPPPGWSKTPPNRTDMTQNIYATTGTLDPVTNKLLEGTSWSDVVQWSGTEGTIGHDGQRGPGMYSLGIPGLGGWDDGQANAFFQNNFGSPPVRYDVLTEFNSNAPQSAFTRQWNGSGWVNPAMVLHGNMIVNGTVTADKIVAGNAFLSQIGVNIIYDRNAALSGNPEAYYKMKIDLNSGYIHIR

Physico‐chemical properties

protein length:	685 AA
molecular weight:	74873,21220 Da
isoelectric point:	4,88022
aromaticity:	0,10511
hydropathy:	-0,24642

Domain architecture

YP_009805449.1

1 685 aa

STR 10–97 · STR 103–197 · STR 211–335 · STR 350–664 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR057550
STR

IPR057550 IPR057551 IPR057552 IPR057549

IPR057551
STR

IPR057551

YP_009805449.1

1685 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR057550	STR	DC_0866	10	97	InterPro cluster	Straight fiber protein PB4, first Fn3-like domain	N-terminal	Medium	Text match	229 proteins / 229 hits
IPR057551	STR	DC_0197	103	196	InterPro cluster	Straight fiber protein PB4, second Fn3-like domain	N-terminal	Medium	Text match	230 proteins / 230 hits
IPR057551	STR	DC_0197	103	197	InterPro cluster	Straight fiber protein PB4, second Fn3-like domain	N-terminal	Medium	Text match	230 proteins / 230 hits
IPR057552	STR	DC_0003	211	335	InterPro cluster	Straight fiber protein PB4, third Fn3-like domain	Central	High	Text match	998 proteins / 1603 hits
IPR057549	STR	DC_0351	350	664	InterPro cluster	Straight fiber protein PB4, spike domain	C-terminal	High	Text match	247 proteins / 290 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

YP_009805449.1

1 685 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	407	407	0,8369
Central domain	408	639	233	0,2688
C-terminal	640	685	45	0,7391

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Salmonella phage S131 [NCBI] · taxon 2231354

Uroviricota Caudoviricetes Demerecviridae Tequintavirus Tequintavirus S131

Host

Salmonella enterica [NCBI] · taxon 28901

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica

Genbank protein accession

YP_009805449.1 [NCBI]

Genbank nucleotide accession

NC_048009 [NCBI]

CDS location

range 18415 -> 20472
strand +

CDS

ATGATTTCGAATAATGCACCAGCCAAAATGGTCTTAAATAGTATAATGACTGGATATACAATGGCGTATGTCCAGCACTCTATATATACTGACTATGACGTTATTGGTAGATCTTTTTGGTTAAAGATGGGAGAAAGTATAGATAGACGTGATTATACCGGTATAGATACTTTCTTCGTAATGATTAATAACCTGACCCCTTCAACCTCTTACGAGATTCAAGGGGCTTTTTATGATTCTATTATAGATTCTGAATTACTAGAGGCTAAAATTGGTATCAATCTATCTAATGAAACCAACTTTAAGACAAAAGAGAAGCCAATAATTACTGCAGCAAGATCTGAATCAGAACCCGTTGATGTTGGTGTTGGTGCTCCAATAGTTGTTGTAGAGACTGCTGGTGAAGCTAGTTACTGTACTATTGAATTAAAAAGTACTGCATCAGAAGATAGTGAATGGGTTAAATATTATATAGGCGCACTGGGACCTACTATCAAATTTGGTGGTGTTCCTGTTGGCGACTATAAGATCAGAATATCTGGTCAAGTTACGATGCCAGATGGTGTTACAGTTGACTCATCTGGTTATTATGAATATCCTAGCATTTTCACTGTAGCTTATAATTTTGTACCACCTACTGCACCTACTAACATTGCCTTTAAAGCTGCACGAATTGCAGATGGTAAGGAACGATATGATGTCAGAATAGAGTGGGACTGGGAACGTGGTGCTGGTGCTAATGTCCGTGAATTTCTAGTCACTTATATAAACTCTGAGGAATACGCTAAGACTGGCTGGGCTAAAGCTCAAAAGATAAACGTTGGGGCTGCCAGAGCTGCAACGATTATATCATTCCCATGGAAAGTTGAGCATACTTTTAAGGTATCATCAATTGCCTGGGGACCAAATAAGCAAGATATAACAGAATCAGCTCCTGTAACATTTATATTGAATGAAGATACTCCTCTAGACAACAGCTTTGTCAATGAGACGGGTATTGATGTTAATTATGCCTTTATTAAGGGTAGCATGAAAGATGGAGAAATCTGGAGACAGACATTCTTAATCGACGCAGCTACTGGTGCTATTAACATTGGTCTACTAGATGAAGAAGGAAAAGCACCTATTTCTTTTGACCCTATAAACCGTGTTGTTAACGTTGATGGTAAAGTAATTACTAGAGATATTAATGCTGCGAACTTTATCATGACTAACTTATCTGGTAAGGATAATCCAGCAATTTACACTCAAGGTAAATCTTGGGGGGATAATAACTCTGGTATTTGGATGGGTATGGATAATACCTCTGCCAAAGCTAAATTAGACATTGGTAATGCCACACAGTGGATTCGTTATGATGGTGATGTGCTACGTATTTCTAGTGGAGTAGTTATTGGAACTCCTAAGGGCGATGTAGATCTTGGTACTGGTATGCAAGGTAAGCAAACAGTATTTGTTTATAAGTTAGCAACATCTCTACCTGCTAAACCACTAGAACAAGATTATCCGCCTCCTGGTTGGTCAAAAACTCCACCTAACCGTACAGATATGACACAAAATATCTATGCCACTACAGGTACGCTTGATCCCGTTACTAACAAACTTCTTGAAGGTACTAGCTGGTCTGATGTAGTTCAGTGGAGCGGTACTGAAGGTACTATAGGACATGACGGACAACGTGGTCCTGGGATGTACTCCTTAGGTATTCCTGGTCTTGGAGGCTGGGATGATGGACAAGCTAATGCCTTCTTCCAGAATAACTTTGGTAGTCCTCCTGTTAGATATGATGTATTAACCGAATTTAATAGTAATGCTCCACAATCAGCATTTACCAGACAATGGAATGGATCTGGGTGGGTTAACCCTGCAATGGTTCTTCACGGGAACATGATTGTTAATGGAACAGTGACGGCAGATAAAATTGTAGCAGGAAATGCTTTCTTGTCTCAAATTGGTGTTAATATCATTTATGATAGAAATGCTGCGTTATCCGGGAATCCTGAGGCATACTACAAGATGAAGATAGACCTAAATAGTGGGTATATCCATATAAGGTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)