Protein

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Genbank accession
XOD32014.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,98
TSP
Evidence RBPdetect
Probability 0,84
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRVLFTKDDQGNIIDLGFAKGGSIDGNVIHKGNYNQTGDYTLNGTFTQTGNFNLTGIARVTRDIIAAGQIMTEGGELITKSSGTAHVRFHDSISRERGIIYAPANDGLTTQVLNIRVQDYAAGSESTYAFSGSGLFTSPEVSAWKSMSTPQILTNKVITNNKSTGDYDIYSMADNVPLSESTTAINHLRVMRNAVGSGIFHEVKDNDGITWYSGDGLDAYLWSFTWSGGIKSSHSISIGLTPGNKDYSILGPSSIALGDNDTGFKWHQDGYYFSVNNGTKTFLFSPSETTSLRKFVAGYSTNGTDLTTPPTENYALATVVTYHDNNAFGDGQTLLGYYQGGRYHHYFRGRGTTNINTAGGLLVTPGNIDVIGGSVNIDGRNNASTLMLKGNTTGSSSVDNMTISVWGNTFTNPSEGTRKNVMEISDATSWMSYIQRLTTGEVEMNVNGSFESSGVTAGNRGVHTTGEISSGAVNALRIWNADYGAIFRRSEGSLHIIPTAYGEGKHGDIGPLRPFSMALDTGKVTIPDLDLNYASFAANGYIKFVGHGAGAGGYDIQYAQAAPIFQEIDDDAISKYYPIVKQKFLNSKAVWSLGTEINSGTFVLHHLKEDGSQGHTSRFNADGTVNFPDNVQVGGGEATIARNGNIFSDIWKSFTSAGDTTNIRDAIATRVAKEGDTMTGRLTLSAGNDALVLTAGTGASSHIRSDVGGTNNWFIGKGGADNGLSFYSYITQGGVNITNTGEIALSPQGQGAFHFNRDRLYINASQWTAHQAGDWGNQWRQEAPVFVDFGNVGNDSYYPIIKGKSGITNEGYISGVDFGMRRIPNNWAQGIIRVGNQENGHDPQAIFEFHHNGTFYALSMVKSNRISAGGGDPVWTGACVVIGDNDTGLVHGGDGRINMVANGIHIANWGAGYQSHPGLWDSNGAFWTEVGKAIISHGHLVQANDSYSTYVRDVYVRSDIRVKKDLVKFENASQKLSKINGYTYMQKRGMDEEGNQKWEPNAGLIAQEVQAILPELVEGDLDGEALLRLNYNGVIGLNTAAINEHTVEIAELKSEIEELKALIKSLLK
Physico‐chemical
properties
protein length:1102 AA
molecular weight: 118672,01410 Da
isoelectric point:5,73155
aromaticity:0,09437
hydropathy:-0,33485

Domains

Domains [InterPro]
DC_0538
STR
1–684
DC_0538 G3DSA:6.20.80.10 IPR030392 Coil
IPR048390
ATT
449–549
IPR048390 DC_0339
IPR030392
CHP
992–1090
IPR030392
DC_0594
RBD
999–1102
DC_0594
XOD32014.1
1 1102
Architecture
STR
ATT
STR
RBD
STR 1-448 | ATT 449-549 | STR 550-1028 | RBD 1029-1102
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD32014.1
1 1102
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,6586
Central domain 57 255 200 0,2140
C-terminal 256 1102 846 0,7996
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-56
Central
57-255
C-terminal
256-1102

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb2
[NCBI] 		3387547 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD32014.1 [NCBI]
Genbank nucleotide accession
PQ666540 [NCBI]
CDS location
range 157416 -> 160724
strand +
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACTGCAGGAGCACGTCCTGCCGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGACCGTGTACTTTTTACTAAAGACGATCAAGGAAATATCATTGATCTGGGTTTTGCTAAGGGTGGTAGTATTGACGGAAATGTTATTCATAAAGGAAATTACAACCAAACTGGCGATTACACTTTAAATGGCACCTTCACTCAGACAGGTAATTTTAATTTAACTGGTATTGCTCGAGTAACTCGTGATATTATTGCAGCTGGGCAGATTATGACTGAAGGTGGGGAACTTATTACAAAAAGTTCAGGTACAGCGCATGTTCGTTTTCATGATAGCATTAGCCGTGAGCGTGGAATCATTTATGCTCCGGCTAATGATGGATTAACTACACAAGTACTTAATATCAGGGTTCAAGACTACGCCGCTGGTAGCGAAAGCACTTATGCATTTTCAGGTAGTGGCCTATTTACTTCACCTGAAGTATCAGCATGGAAATCTATGTCAACTCCTCAGATTTTGACCAACAAAGTCATTACTAATAATAAATCTACAGGTGATTATGACATTTATTCGATGGCAGATAATGTTCCACTGTCTGAAAGCACTACTGCTATTAATCATCTCCGTGTCATGCGTAATGCAGTCGGTTCTGGCATTTTCCATGAAGTTAAAGATAATGATGGAATAACTTGGTACAGCGGAGATGGGCTAGACGCTTATCTTTGGTCATTTACATGGAGCGGCGGAATTAAATCGAGTCACTCAATTTCTATCGGTTTAACACCTGGCAATAAAGATTATTCAATACTAGGACCATCTAGTATTGCTTTAGGGGATAATGATACTGGATTTAAATGGCACCAGGATGGATATTATTTCAGCGTCAATAATGGAACGAAAACATTTTTATTTAGCCCTAGCGAAACAACTAGCCTAAGAAAATTTGTAGCTGGATATTCTACCAATGGAACCGATTTAACTACTCCTCCTACTGAAAACTATGCTCTCGCTACTGTTGTTACATATCATGATAATAACGCGTTTGGAGATGGTCAGACTCTTTTGGGATATTATCAAGGCGGTAGATATCATCATTATTTTCGTGGAAGAGGAACAACTAATATTAATACCGCTGGAGGATTATTAGTTACTCCTGGTAATATTGATGTTATTGGTGGTTCTGTTAATATCGATGGTAGAAATAATGCTTCTACATTGATGCTTAAAGGTAACACAACTGGTAGTAGTTCAGTTGATAATATGACAATTTCCGTGTGGGGTAATACGTTTACTAATCCTAGTGAAGGCACCCGTAAAAATGTCATGGAAATTTCTGATGCAACTAGTTGGATGAGCTATATTCAAAGACTTACTACCGGTGAAGTAGAAATGAACGTTAATGGTTCATTTGAATCATCTGGTGTTACTGCTGGAAATAGAGGAGTTCACACAACAGGTGAAATTTCATCTGGGGCCGTGAATGCGCTTCGCATTTGGAATGCAGATTATGGAGCCATTTTTAGACGTTCAGAAGGCAGTCTTCATATTATTCCAACTGCTTACGGTGAAGGTAAACACGGCGATATCGGTCCACTTCGCCCGTTTAGTATGGCTTTAGATACTGGTAAAGTCACTATTCCTGATTTAGATTTAAATTATGCTTCGTTTGCCGCTAACGGTTATATTAAATTTGTTGGTCATGGAGCGGGTGCCGGCGGTTATGACATTCAATATGCTCAAGCGGCTCCTATTTTCCAGGAAATCGATGATGATGCTATAAGCAAATATTACCCTATTGTTAAACAGAAGTTTTTAAACAGTAAAGCTGTTTGGTCTTTAGGTACTGAAATTAATTCAGGTACATTTGTTTTACATCATTTAAAAGAAGATGGTTCACAAGGCCATACATCAAGATTTAATGCTGACGGTACAGTTAATTTCCCTGATAATGTTCAGGTTGGTGGTGGTGAAGCTACTATTGCTAGAAATGGTAATATTTTTTCTGATATTTGGAAATCGTTTACTTCAGCAGGAGACACCACAAACATTCGCGATGCGATAGCTACTCGTGTTGCCAAAGAAGGCGATACGATGACTGGTAGGTTGACTTTATCTGCTGGAAATGATGCCCTTGTTTTAACTGCAGGCACGGGCGCTTCATCGCACATCCGTAGCGATGTAGGTGGTACAAATAATTGGTTTATTGGTAAAGGCGGTGCCGACAATGGTCTAAGTTTTTACAGTTACATTACACAAGGCGGTGTGAACATAACAAATACCGGTGAAATAGCGCTTTCTCCTCAAGGACAAGGAGCGTTTCATTTTAATAGAGACCGCCTTTATATAAATGCTAGTCAATGGACCGCACACCAGGCTGGCGATTGGGGCAATCAATGGCGCCAGGAAGCTCCTGTATTTGTTGATTTTGGTAATGTTGGTAATGATAGTTATTATCCGATTATCAAAGGAAAATCAGGTATTACTAATGAAGGGTATATATCTGGTGTAGATTTTGGTATGCGACGCATTCCTAATAACTGGGCACAAGGTATTATTCGTGTAGGTAATCAGGAAAACGGCCATGACCCACAAGCTATCTTCGAATTCCACCATAATGGTACGTTTTATGCCCTGAGCATGGTTAAGAGTAACAGAATATCAGCTGGTGGAGGTGACCCTGTATGGACAGGCGCATGTGTTGTTATTGGTGATAATGATACCGGATTAGTTCATGGTGGTGACGGCCGAATCAATATGGTTGCCAATGGTATACATATTGCAAACTGGGGCGCAGGCTATCAATCTCATCCGGGCCTTTGGGATTCAAATGGGGCTTTTTGGACAGAAGTTGGCAAAGCAATTATTTCTCATGGGCATCTCGTTCAGGCGAATGACAGTTATTCCACATATGTCCGTGATGTTTATGTCCGCTCTGATATTCGTGTTAAAAAGGACCTTGTTAAATTTGAAAATGCTTCTCAGAAGCTTTCTAAAATTAACGGTTACACTTATATGCAGAAACGTGGAATGGATGAAGAAGGTAATCAGAAATGGGAACCTAACGCTGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCAGAATTAGTTGAAGGCGACCTTGATGGTGAAGCTTTACTTCGTTTGAACTATAACGGCGTAATTGGTTTAAATACAGCTGCAATCAATGAGCATACTGTAGAAATTGCAGAACTTAAATCAGAAATCGAAGAACTTAAAGCATTAATTAAATCATTGTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8d8896a8777ec99a8a1a32f526e2969f57fe8d9967256242c549db478cda6fd1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2835
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50