Protein

View in Explore
Genbank accession
XOD32014.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,98
TSP
Evidence RBPdetect
Probability 0,84
TSP
Evidence RBPdetect2
Probability 0,62
Seq2Symm
C3 confidence 0,998 truncated
C3 0,998
D3 0,005
C1 0,002
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MATLKQIQFKRSKTAGARPAASVLAEGELAINLKDRVLFTKDDQGNIIDLGFAKGGSIDGNVIHKGNYNQTGDYTLNGTFTQTGNFNLTGIARVTRDIIAAGQIMTEGGELITKSSGTAHVRFHDSISRERGIIYAPANDGLTTQVLNIRVQDYAAGSESTYAFSGSGLFTSPEVSAWKSMSTPQILTNKVITNNKSTGDYDIYSMADNVPLSESTTAINHLRVMRNAVGSGIFHEVKDNDGITWYSGDGLDAYLWSFTWSGGIKSSHSISIGLTPGNKDYSILGPSSIALGDNDTGFKWHQDGYYFSVNNGTKTFLFSPSETTSLRKFVAGYSTNGTDLTTPPTENYALATVVTYHDNNAFGDGQTLLGYYQGGRYHHYFRGRGTTNINTAGGLLVTPGNIDVIGGSVNIDGRNNASTLMLKGNTTGSSSVDNMTISVWGNTFTNPSEGTRKNVMEISDATSWMSYIQRLTTGEVEMNVNGSFESSGVTAGNRGVHTTGEISSGAVNALRIWNADYGAIFRRSEGSLHIIPTAYGEGKHGDIGPLRPFSMALDTGKVTIPDLDLNYASFAANGYIKFVGHGAGAGGYDIQYAQAAPIFQEIDDDAISKYYPIVKQKFLNSKAVWSLGTEINSGTFVLHHLKEDGSQGHTSRFNADGTVNFPDNVQVGGGEATIARNGNIFSDIWKSFTSAGDTTNIRDAIATRVAKEGDTMTGRLTLSAGNDALVLTAGTGASSHIRSDVGGTNNWFIGKGGADNGLSFYSYITQGGVNITNTGEIALSPQGQGAFHFNRDRLYINASQWTAHQAGDWGNQWRQEAPVFVDFGNVGNDSYYPIIKGKSGITNEGYISGVDFGMRRIPNNWAQGIIRVGNQENGHDPQAIFEFHHNGTFYALSMVKSNRISAGGGDPVWTGACVVIGDNDTGLVHGGDGRINMVANGIHIANWGAGYQSHPGLWDSNGAFWTEVGKAIISHGHLVQANDSYSTYVRDVYVRSDIRVKKDLVKFENASQKLSKINGYTYMQKRGMDEEGNQKWEPNAGLIAQEVQAILPELVEGDLDGEALLRLNYNGVIGLNTAAINEHTVEIAELKSEIEELKALIKSLLK
Physico‐chemical
properties
protein length:1102 AA
molecular weight: 118672,01410 Da
isoelectric point:5,73155
aromaticity:0,09437
hydropathy:-0,33485

Domains

View on InterPro
Domain architecture
XOD32014.1
1 1102 aa
ATT 449–549 · STR 722–776 · CHP 992–1090 ·
ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped
Proteins with similar domain architecture

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
XOD32014.1
1 1102 aa
Domain Start End Length (AA) Confidence
N-terminal 1 56 56 0,6586
Central domain 57 255 200 0,2140
C-terminal 256 1102 846 0,7996
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Shigella phage sb2 [NCBI] · taxon 3387547
Shigella phage sb2
Host
Shigella flexneri [NCBI] · taxon 623
Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Shigella Shigella flexneri

Coding sequence (CDS)

Genbank protein accession
XOD32014.1 [NCBI]
Genbank nucleotide accession
PQ666540 [NCBI]
CDS location
range 157416 -> 160724
strand +
CDS
ATGGCTACTTTAAAACAAATACAATTTAAAAGAAGCAAAACTGCAGGAGCACGTCCTGCCGCTTCAGTATTAGCCGAAGGTGAATTGGCTATAAACTTAAAAGACCGTGTACTTTTTACTAAAGACGATCAAGGAAATATCATTGATCTGGGTTTTGCTAAGGGTGGTAGTATTGACGGAAATGTTATTCATAAAGGAAATTACAACCAAACTGGCGATTACACTTTAAATGGCACCTTCACTCAGACAGGTAATTTTAATTTAACTGGTATTGCTCGAGTAACTCGTGATATTATTGCAGCTGGGCAGATTATGACTGAAGGTGGGGAACTTATTACAAAAAGTTCAGGTACAGCGCATGTTCGTTTTCATGATAGCATTAGCCGTGAGCGTGGAATCATTTATGCTCCGGCTAATGATGGATTAACTACACAAGTACTTAATATCAGGGTTCAAGACTACGCCGCTGGTAGCGAAAGCACTTATGCATTTTCAGGTAGTGGCCTATTTACTTCACCTGAAGTATCAGCATGGAAATCTATGTCAACTCCTCAGATTTTGACCAACAAAGTCATTACTAATAATAAATCTACAGGTGATTATGACATTTATTCGATGGCAGATAATGTTCCACTGTCTGAAAGCACTACTGCTATTAATCATCTCCGTGTCATGCGTAATGCAGTCGGTTCTGGCATTTTCCATGAAGTTAAAGATAATGATGGAATAACTTGGTACAGCGGAGATGGGCTAGACGCTTATCTTTGGTCATTTACATGGAGCGGCGGAATTAAATCGAGTCACTCAATTTCTATCGGTTTAACACCTGGCAATAAAGATTATTCAATACTAGGACCATCTAGTATTGCTTTAGGGGATAATGATACTGGATTTAAATGGCACCAGGATGGATATTATTTCAGCGTCAATAATGGAACGAAAACATTTTTATTTAGCCCTAGCGAAACAACTAGCCTAAGAAAATTTGTAGCTGGATATTCTACCAATGGAACCGATTTAACTACTCCTCCTACTGAAAACTATGCTCTCGCTACTGTTGTTACATATCATGATAATAACGCGTTTGGAGATGGTCAGACTCTTTTGGGATATTATCAAGGCGGTAGATATCATCATTATTTTCGTGGAAGAGGAACAACTAATATTAATACCGCTGGAGGATTATTAGTTACTCCTGGTAATATTGATGTTATTGGTGGTTCTGTTAATATCGATGGTAGAAATAATGCTTCTACATTGATGCTTAAAGGTAACACAACTGGTAGTAGTTCAGTTGATAATATGACAATTTCCGTGTGGGGTAATACGTTTACTAATCCTAGTGAAGGCACCCGTAAAAATGTCATGGAAATTTCTGATGCAACTAGTTGGATGAGCTATATTCAAAGACTTACTACCGGTGAAGTAGAAATGAACGTTAATGGTTCATTTGAATCATCTGGTGTTACTGCTGGAAATAGAGGAGTTCACACAACAGGTGAAATTTCATCTGGGGCCGTGAATGCGCTTCGCATTTGGAATGCAGATTATGGAGCCATTTTTAGACGTTCAGAAGGCAGTCTTCATATTATTCCAACTGCTTACGGTGAAGGTAAACACGGCGATATCGGTCCACTTCGCCCGTTTAGTATGGCTTTAGATACTGGTAAAGTCACTATTCCTGATTTAGATTTAAATTATGCTTCGTTTGCCGCTAACGGTTATATTAAATTTGTTGGTCATGGAGCGGGTGCCGGCGGTTATGACATTCAATATGCTCAAGCGGCTCCTATTTTCCAGGAAATCGATGATGATGCTATAAGCAAATATTACCCTATTGTTAAACAGAAGTTTTTAAACAGTAAAGCTGTTTGGTCTTTAGGTACTGAAATTAATTCAGGTACATTTGTTTTACATCATTTAAAAGAAGATGGTTCACAAGGCCATACATCAAGATTTAATGCTGACGGTACAGTTAATTTCCCTGATAATGTTCAGGTTGGTGGTGGTGAAGCTACTATTGCTAGAAATGGTAATATTTTTTCTGATATTTGGAAATCGTTTACTTCAGCAGGAGACACCACAAACATTCGCGATGCGATAGCTACTCGTGTTGCCAAAGAAGGCGATACGATGACTGGTAGGTTGACTTTATCTGCTGGAAATGATGCCCTTGTTTTAACTGCAGGCACGGGCGCTTCATCGCACATCCGTAGCGATGTAGGTGGTACAAATAATTGGTTTATTGGTAAAGGCGGTGCCGACAATGGTCTAAGTTTTTACAGTTACATTACACAAGGCGGTGTGAACATAACAAATACCGGTGAAATAGCGCTTTCTCCTCAAGGACAAGGAGCGTTTCATTTTAATAGAGACCGCCTTTATATAAATGCTAGTCAATGGACCGCACACCAGGCTGGCGATTGGGGCAATCAATGGCGCCAGGAAGCTCCTGTATTTGTTGATTTTGGTAATGTTGGTAATGATAGTTATTATCCGATTATCAAAGGAAAATCAGGTATTACTAATGAAGGGTATATATCTGGTGTAGATTTTGGTATGCGACGCATTCCTAATAACTGGGCACAAGGTATTATTCGTGTAGGTAATCAGGAAAACGGCCATGACCCACAAGCTATCTTCGAATTCCACCATAATGGTACGTTTTATGCCCTGAGCATGGTTAAGAGTAACAGAATATCAGCTGGTGGAGGTGACCCTGTATGGACAGGCGCATGTGTTGTTATTGGTGATAATGATACCGGATTAGTTCATGGTGGTGACGGCCGAATCAATATGGTTGCCAATGGTATACATATTGCAAACTGGGGCGCAGGCTATCAATCTCATCCGGGCCTTTGGGATTCAAATGGGGCTTTTTGGACAGAAGTTGGCAAAGCAATTATTTCTCATGGGCATCTCGTTCAGGCGAATGACAGTTATTCCACATATGTCCGTGATGTTTATGTCCGCTCTGATATTCGTGTTAAAAAGGACCTTGTTAAATTTGAAAATGCTTCTCAGAAGCTTTCTAAAATTAACGGTTACACTTATATGCAGAAACGTGGAATGGATGAAGAAGGTAATCAGAAATGGGAACCTAACGCTGGTTTAATTGCTCAAGAAGTTCAAGCTATTTTACCAGAATTAGTTGAAGGCGACCTTGATGGTGAAGCTTTACTTCGTTTGAACTATAACGGCGTAATTGGTTTAAATACAGCTGCAATCAATGAGCATACTGTAGAAATTGCAGAACTTAAATCAGAAATCGAAGAACTTAAAGCATTAATTAAATCATTGTTAAAATAA

Genome Context

Tertiary structure

XOD32014.1
ESMFold2 structure
Source ESMFold2
pLDDT 58.8
Oligomeric state monomer
Download structure