Phage RBP Database

Genbank accession

WVW76825.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence GenBank

Probability 1,00

TF

Evidence Phold

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,90

TSP

Evidence RBPdetect2

Probability 0,56

Seq2Symm

C3 confidence 0,925

C3	0,925
C1	0,029
C5	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MALNFTTITENNVIRDLTTQVNNIGEELTKERNIFDITDDLVYNFNKSQKIKLTDDKGLTKSYGNITSLRDIKEPGYYYIGARTLATLLDKPDMESIDVVLHVVPLDTSSKVVQHLYTLSTNNNQIKMLYRFVSGNSSSEWQFIQGLPSNKNAVISGTNILDISSPGVYFVMGMTGGMPSGVDSGFLDLSVDSNDNRLARLTDAETGKEYTSIKKPTGVYTAWKKEFEPKDMEKYLLSSIRDDGSASFPLLVYTSDNKTFQQAIIDHIDRTGQTTFTFYAQGGVSGSPMSNSCRGLFMSDTPNTSSLHGVYNAIGTDGRNVTGSVVGGNWTSPKTSPSHKELWTGAQSFLSTGTTKNLSDDISNYSYVEVYTKHKTTEKTKGNDDTGTICHKFYLDGSGTYVCSGTFVSGDRTDTKPPITEFYRVGVSFKGSTWTLVDSAVQNSKTQYVTRIIGINMP

Physico‐chemical properties

protein length:	458 AA
molecular weight:	50466,75930 Da
isoelectric point:	5,86217
aromaticity:	0,09607
hydropathy:	-0,42751

Domain architecture

WVW76825.1

1 458 aa

RBD 337–458

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR057110
RBD

IPR057110

WVW76825.1

1458 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1773
STR

DC_1773

DC_0448
STR

DC_0448

WVW76825.1

1458 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR057110	RBD	DC_0702	337	458	InterPro cluster	ORF68, C-terminal	C-terminal	Low	Positional only	121 proteins / 121 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WVW76825.1

1 458 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	320	320	0,4892
Central domain	321	447	128	0,0208
C-terminal	448	458	10	0,9950

Note: Constraints were applied during segmentation.
Fixed 158 C-terminal predictions appearing before Central domain|C-terminal too short, adjusted boundary

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Staphylococcus phage vB_SauM-T-SE-G2 [NCBI] · taxon 3097443

Uroviricota Caudoviricetes Herelleviridae Kayvirus Staphylococcus phage vB_SauM-T-SE-G2

Host

Staphylococcus sp. [NCBI] · taxon 29387

Bacillota Bacilli Caryophanales Staphylococcaceae Staphylococcus Staphylococcus sp.

Genbank protein accession

WVW76825.1 [NCBI]

Genbank nucleotide accession

OR640350.1 [NCBI]

CDS location

range 79196 -> 80572
strand -

CDS

ATGGCATTAAATTTTACTACAATAACGGAAAACAATGTTATTAGAGACCTGACTACTCAGGTCAATAACATTGGAGAAGAATTAACAAAAGAAAGAAATATATTTGACATTACAGATGATTTAGTTTATAATTTTAATAAATCACAGAAGATTAAACTAACTGATGATAAAGGATTAACTAAATCTTATGGAAACATAACATCTCTTAGAGATATAAAAGAGCCTGGTTACTATTATATTGGGGCTAGAACACTAGCAACGTTATTAGATAAGCCTGACATGGAGTCTATTGATGTTGTATTACATGTAGTACCTCTTGATACTTCTAGTAAAGTAGTGCAACATTTATATACATTATCCACTAACAATAACCAAATTAAAATGTTATATAGATTTGTCTCAGGAAACTCTAGTTCAGAATGGCAATTTATTCAAGGATTACCTAGTAATAAAAATGCTGTTATATCCGGTACTAATATTTTAGATATATCTTCACCAGGTGTTTATTTTGTTATGGGAATGACAGGAGGTATGCCTAGTGGTGTAGATTCAGGTTTTTTAGATTTAAGTGTAGATTCTAATGACAATAGACTAGCTAGGTTAACTGACGCTGAAACTGGTAAAGAGTATACTAGTATTAAGAAACCTACAGGAGTATACACAGCCTGGAAAAAAGAATTTGAACCAAAAGATATGGAGAAATATTTATTAAGTAGTATTAGAGACGATGGTAGTGCATCATTCCCACTTCTAGTTTATACTAGTGATAATAAAACATTCCAACAAGCTATTATAGACCATATAGATAGAACAGGTCAAACAACTTTTACTTTCTACGCTCAAGGTGGTGTGTCAGGTTCACCTATGTCTAATAGTTGTCGAGGATTATTCATGTCTGATACACCTAACACGTCTAGTTTACACGGTGTCTATAATGCTATAGGTACGGATGGTAGAAACGTAACAGGTTCAGTGGTAGGAGGTAATTGGACTTCACCAAAAACATCTCCTTCTCATAAAGAACTATGGACGGGAGCACAGTCATTCTTATCTACAGGGACTACTAAGAATTTATCAGATGATATCAGTAACTATTCTTATGTAGAGGTCTATACTAAACATAAGACAACAGAGAAAACTAAAGGTAATGATGATACAGGTACAATTTGCCATAAGTTTTATCTAGATGGCAGTGGTACTTACGTTTGTTCAGGTACATTTGTATCAGGAGATAGAACAGATACAAAACCACCTATTACAGAGTTTTATAGAGTGGGTGTATCTTTCAAAGGTTCAACATGGACTCTTGTAGATAGTGCAGTACAAAATAGTAAAACTCAATATGTTACAAGAATTATAGGTATTAATATGCCATAG

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)