Protein

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Genbank accession
YP_009275383.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,68
Seq2Symm
C1 confidence 0,974
C1 0,974
C3 0,149
I 0,004
Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).
Protein sequence
MAVVVDGVDPDIYVGSTPIREVYRGGDRLWARGEWLNDPLQNANAWSMSQSSGGGVIIDGEARIAADGTGYAHFVTPAMTDDQYVACRVGGYTHNARQSALFSHDDGSRSGHYMAVFTTGRLDFIRASGWASQTAAFASWSGTIRSDDWIEMWNVGARFRVAVRGSVVIDHVVSNPALGGRRQGIVLTRSLFASSSRMAEWRGGDTRRWRK
Physico‐chemical
properties
protein length:211 AA
molecular weight: 23104,45740 Da
isoelectric point:8,92450
aromaticity:0,10427
hydropathy:-0,29336

Tail Spike Domain Segmentation

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout
YP_009275383.1
1 211 aa
Domain Start End Length (AA) Confidence
N-terminal 1 18 18 0,9303
Central domain 19 200 183 0,0554
C-terminal 201 211 10 0,8093
N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Taxonomy

Phage
Gordonia phage Splinter [NCBI] · taxon 1838080
Uroviricota Caudoviricetes Vendettavirus Vendettavirus vendetta
Host
Gordonia terrae [NCBI] · taxon 2055
Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia terrae

Coding sequence (CDS)

Genbank protein accession
YP_009275383.1 [NCBI]
Genbank nucleotide accession
NC_030927 [NCBI]
CDS location
range 21978 -> 22613
strand +
CDS
ATGGCGGTTGTCGTTGACGGCGTGGACCCGGACATCTACGTCGGGTCCACGCCCATTCGAGAGGTATACCGGGGTGGCGATCGGCTCTGGGCGCGGGGCGAGTGGCTGAACGACCCACTACAGAACGCGAACGCATGGTCTATGTCTCAGTCCTCGGGCGGGGGCGTCATCATCGACGGCGAAGCTCGGATCGCGGCTGACGGCACGGGGTATGCCCATTTCGTGACGCCGGCAATGACGGACGATCAGTATGTGGCTTGCCGGGTCGGCGGGTACACGCACAACGCGCGGCAGTCGGCGCTGTTCTCGCATGACGACGGCAGCCGTTCCGGGCACTACATGGCGGTGTTCACGACAGGCCGGCTCGACTTCATTCGAGCGTCGGGGTGGGCGTCGCAAACGGCGGCGTTTGCGTCGTGGTCCGGGACGATCAGGTCTGACGACTGGATCGAAATGTGGAACGTCGGTGCTCGGTTCCGGGTCGCTGTCCGTGGGTCGGTGGTCATCGACCACGTGGTGAGCAATCCGGCGCTCGGCGGGCGTCGACAGGGAATCGTACTGACGCGAAGCCTCTTCGCGAGTTCGTCGCGTATGGCGGAGTGGCGAGGCGGCGATACGCGCCGATGGCGGAAATGA

Genome Context

Tertiary structure

YP_009275383.1
ESMFold structure
Source ESMFold
pLDDT 78.3
Oligomeric state monomer
Download structure