Protein

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Genbank accession
YP_009275383.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAVVVDGVDPDIYVGSTPIREVYRGGDRLWARGEWLNDPLQNANAWSMSQSSGGGVIIDGEARIAADGTGYAHFVTPAMTDDQYVACRVGGYTHNARQSALFSHDDGSRSGHYMAVFTTGRLDFIRASGWASQTAAFASWSGTIRSDDWIEMWNVGARFRVAVRGSVVIDHVVSNPALGGRRQGIVLTRSLFASSSRMAEWRGGDTRRWRK
Physico‐chemical
properties
protein length:211 AA
molecular weight: 23104,45740 Da
isoelectric point:8,92450
aromaticity:0,10427
hydropathy:-0,29336

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009275383.1
1 211
Domain Start End Length (AA) Confidence
N-terminal 1 18 18 0,9303
Central domain 19 200 183 0,0554
C-terminal 201 211 10 0,8093
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-18
Central
19-200
C-terminal
201-211

Taxonomy

  Name Taxonomy ID Lineage
Phage Gordonia phage Splinter
[NCBI] 		1838080 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009275383.1 [NCBI]
Genbank nucleotide accession
NC_030927 [NCBI]
CDS location
range 21978 -> 22613
strand +
CDS
ATGGCGGTTGTCGTTGACGGCGTGGACCCGGACATCTACGTCGGGTCCACGCCCATTCGAGAGGTATACCGGGGTGGCGATCGGCTCTGGGCGCGGGGCGAGTGGCTGAACGACCCACTACAGAACGCGAACGCATGGTCTATGTCTCAGTCCTCGGGCGGGGGCGTCATCATCGACGGCGAAGCTCGGATCGCGGCTGACGGCACGGGGTATGCCCATTTCGTGACGCCGGCAATGACGGACGATCAGTATGTGGCTTGCCGGGTCGGCGGGTACACGCACAACGCGCGGCAGTCGGCGCTGTTCTCGCATGACGACGGCAGCCGTTCCGGGCACTACATGGCGGTGTTCACGACAGGCCGGCTCGACTTCATTCGAGCGTCGGGGTGGGCGTCGCAAACGGCGGCGTTTGCGTCGTGGTCCGGGACGATCAGGTCTGACGACTGGATCGAAATGTGGAACGTCGGTGCTCGGTTCCGGGTCGCTGTCCGTGGGTCGGTGGTCATCGACCACGTGGTGAGCAATCCGGCGCTCGGCGGGCGTCGACAGGGAATCGTACTGACGCGAAGCCTCTTCGCGAGTTCGTCGCGTATGGCGGAGTGGCGAGGCGGCGATACGCGCCGATGGCGGAAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
1f78d976c35aac39888ae1c4d4f03bee90bd88805b2881494d1a7b508fb2b4cf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7830
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50