Phage RBP Database

Genbank accession

XPP60774.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence RBPdetect

Probability 0,57

TF

Evidence RBPdetect2

Probability 0,73

Seq2Symm

C1 confidence 0,997 truncated

C1	0,997
C2	0,026
H	0,000

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAFAPTLTPARIDHMGHMQVPHDIFVYVTTVEGWSLDIENYQPANRQHYLQSILYWMDLNAACIIRSASDSRFAAIKDITQCATILYGKQNVSGDTDPVPVSDFTLSVDPVSGRLPRPVTATLTLNPAHNIPLIRVDWGDGSAPVIVTATGSEVEVSYVYALGASTVTAVTAQAWDRKLEIGVGELHTQAVEFEEPPVSNFMINVIPDRETSPVTATMEITLGADHTAFPIEVSYGDGTGYRIESDTQRPVTTLTHAYAEDAEGEFLVTAQAVDEAMGGIPVGPLQSVTLTIVAPPAPVSDFTIDMQPTSGYVPLTATLTITCTAAHTAPSVEVNWGDGTLPSTIATGPSAVVTLTHLYTQGPFGTVSVQAQSKEGGDKFGEELTETIEVKDPPVANYTSTVTPLQAYLPTSVTLVLTPAANHNVPYIFVNWGDGTAVEKVSVTPSVATNVVHAYNGIGRVSAISLQPSNDIDGTELIGSARNIAVSYRVRPVAGISLALDQTDVVQPATVTATVTTDASNTVEVVEINWGDGSGVETITGLARSGTYTKTHTYNTGSNQTVNVSAQGIENDPIGGRIPVGGLVQTPLTLRIPLVANFNATITPTSGTLPLATTLTITTGATNTAPTYEVDWGDGTAKSSTSVTANDTKTLAHTFALGTSPKRTVTIQGKDGSGVNVGTAKTIEVTLAEPAVAAFTLSIDPTNATTPVFVTATLVASSTHTAPTITVDWGDGSGASIVPIVANETKTVGHTFTVAGTINIVAQAKSSDNAAVGSPRTSVLTLKAPPVSNFTQSLSPTSGTTPLEVTATVIAGSTHTAPTVTIDWGDGTTGSFVNIAAGETKTATHTYAAGLSGVKTVTFQAKDGNTVVGSSQASTVSLSLPVTASFTFTVLPTSGTLPLPVQVTLNTGADNTVPKIRVDWGDGTAVTDVVVGVSDTKTANHTYAVGTNPSKTITMTGLNSSNTPVGTAKTQVVTLNEPPVIPSNGPGPGELIAGDANAGLFGDLSVSELVTIEQIEALATVALPGTATNRSVTNLWVKYSFNNKILYIPKRPVRGGLNWNDIYKAGFVYGTDNNGLYPGANTPTNQLKIVEKLDSSGKTWRFKVRLISVVAADPTSAWAATDAVTRNSEFAKLVERTVPSVNVDIVWASYGNMGTVVGQSTWSAATEYSIMAGINTNAYSRQQVQKISNTAWLPVLELIPD

Physico‐chemical properties

protein length:	1201 AA
molecular weight:	125402,95930 Da
isoelectric point:	4,81622
aromaticity:	0,06245
hydropathy:	0,03239

Domain architecture

XPP60774.1

1 1201 aa

STR 99–161 · STR 263–459 · STR 551–647 · STR 652–867 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR035986
STR

IPR035986 IPR035986 IPR035986 IPR035986

IPR035986
STR

IPR035986 IPR035986

XPP60774.1

11201 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_0638
ATT

DC_0638

XPP60774.1

11201 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR035986	STR	IPR035986	99	161	Merged direct domain	PKD domain superfamily	Central	Low	Positional only	4 proteins / 4 hits
IPR035986	STR	IPR035986	263	371	Merged direct domain	PKD domain superfamily	Central	Low	Positional only	4 proteins / 4 hits
IPR035986	STR	IPR035986	355	459	Merged direct domain	PKD domain superfamily	Central	Low	Positional only	4 proteins / 4 hits
IPR035986	STR	IPR035986	551	647	Merged direct domain	PKD domain superfamily	Central	Low	Positional only	4 proteins / 4 hits
IPR035986	STR	IPR035986	652	769	Merged direct domain	PKD domain superfamily	Central	Low	Positional only	4 proteins / 4 hits
IPR035986	STR	IPR035986	747	867	Merged direct domain	PKD domain superfamily	Central	Low	Positional only	4 proteins / 4 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

XPP60774.1

1 1201 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	19	19	0,6821
Central domain	20	1000	982	0,0752
C-terminal	1001	1201	200	0,9878

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Pseudomonas phage Milchi [NCBI] · taxon 3374953

Uroviricota Caudoviricetes Pseudomonas phage Milchi

Host

Pseudomonas poae [NCBI] · taxon 200451

Pseudomonadota Gammaproteobacteria Pseudomonadales Pseudomonadaceae Pseudomonas Pseudomonas poae

Genbank protein accession

XPP60774.1 [NCBI]

Genbank nucleotide accession

PQ464597 [NCBI]

CDS location

range 118915 -> 122520
strand +

CDS

ATGGCATTCGCACCCACACTAACACCAGCACGTATTGACCACATGGGTCATATGCAAGTGCCGCATGACATTTTTGTCTATGTGACCACTGTTGAGGGTTGGTCTCTTGATATCGAGAATTACCAGCCAGCAAACCGTCAGCATTACCTACAATCTATCCTGTATTGGATGGATCTGAATGCTGCATGTATCATTAGATCTGCATCAGACTCAAGATTTGCTGCTATCAAGGATATCACACAATGTGCTACCATTCTATATGGTAAGCAAAACGTAAGCGGCGACACAGACCCAGTTCCTGTTTCCGATTTTACACTATCGGTTGACCCGGTTTCTGGTAGACTTCCAAGACCAGTTACTGCTACACTTACACTTAACCCGGCCCACAACATTCCGTTGATCCGAGTTGATTGGGGTGATGGTTCGGCTCCAGTGATCGTAACTGCTACTGGCTCCGAGGTAGAGGTTTCTTATGTCTACGCACTTGGTGCGTCTACAGTAACTGCTGTTACTGCTCAGGCATGGGATAGAAAATTGGAAATTGGTGTAGGTGAACTACACACCCAAGCCGTTGAGTTTGAAGAACCACCAGTTTCAAATTTCATGATCAATGTGATCCCAGACCGTGAAACGTCTCCGGTTACCGCAACCATGGAAATCACACTTGGTGCTGATCATACAGCATTCCCAATTGAAGTATCGTATGGTGATGGTACAGGCTACCGCATCGAATCCGACACACAGCGTCCAGTTACAACACTGACCCACGCTTATGCGGAAGATGCCGAGGGTGAATTCCTAGTCACCGCACAAGCAGTTGATGAGGCTATGGGTGGGATTCCTGTTGGTCCGCTACAAAGCGTTACACTGACAATCGTGGCACCACCAGCACCTGTATCAGATTTCACTATTGATATGCAGCCGACTTCTGGTTATGTTCCACTGACAGCAACACTGACTATCACATGTACAGCTGCGCACACCGCCCCAAGCGTTGAAGTTAACTGGGGTGATGGTACACTACCTTCGACAATTGCTACAGGCCCAAGCGCTGTTGTAACATTGACACACCTTTACACCCAAGGACCATTCGGTACTGTAAGTGTTCAGGCTCAGTCGAAAGAGGGTGGTGATAAATTCGGTGAAGAACTTACCGAGACTATTGAGGTTAAAGATCCTCCTGTAGCGAACTACACTTCGACGGTAACCCCGTTGCAAGCGTACTTGCCAACATCGGTAACACTTGTTCTGACACCAGCTGCAAACCACAATGTCCCATACATCTTTGTAAACTGGGGTGATGGTACTGCGGTTGAAAAAGTTTCGGTTACACCATCGGTAGCTACTAACGTAGTCCATGCGTATAACGGTATCGGTCGTGTTTCGGCAATTTCTCTGCAACCATCTAATGATATTGATGGTACTGAGTTGATTGGTAGTGCAAGAAACATTGCGGTTTCGTACCGCGTTCGTCCGGTTGCTGGTATTTCACTTGCATTGGATCAAACTGATGTAGTGCAACCTGCTACAGTTACAGCGACAGTTACCACTGATGCATCAAACACTGTTGAAGTGGTTGAAATTAACTGGGGTGATGGATCCGGTGTTGAAACAATCACTGGTCTTGCAAGATCTGGCACATATACCAAGACTCACACATATAACACTGGATCAAACCAGACTGTTAACGTGTCGGCTCAAGGTATTGAAAACGATCCTATTGGTGGAAGAATCCCTGTAGGTGGACTTGTTCAAACTCCGCTGACCCTGCGTATTCCGCTGGTTGCGAATTTCAACGCTACGATTACACCAACATCAGGTACGTTGCCACTGGCTACAACCCTGACTATCACTACAGGCGCAACTAACACTGCTCCTACGTATGAAGTCGATTGGGGTGATGGTACTGCGAAGTCCAGCACATCGGTCACTGCAAATGATACAAAGACTTTGGCGCACACATTCGCATTGGGTACATCCCCTAAGCGTACTGTTACCATCCAAGGTAAAGACGGTTCTGGTGTAAACGTTGGTACCGCTAAGACAATTGAAGTTACACTGGCAGAACCAGCTGTAGCCGCATTTACATTGTCTATCGATCCGACTAACGCTACAACTCCTGTATTTGTTACCGCAACTCTTGTTGCTAGTTCGACCCATACTGCTCCAACAATTACTGTTGATTGGGGTGATGGTTCCGGTGCATCGATTGTTCCAATTGTTGCTAACGAAACTAAAACAGTAGGTCACACATTTACAGTAGCTGGTACTATCAACATTGTTGCACAAGCTAAGTCTAGCGATAATGCAGCGGTTGGTTCACCTAGAACTTCTGTATTGACACTGAAAGCTCCACCTGTATCAAACTTTACACAATCACTCAGCCCTACCTCCGGTACTACACCGTTGGAAGTGACTGCAACGGTAATTGCCGGATCGACTCATACCGCTCCGACAGTAACAATTGATTGGGGTGATGGTACAACAGGGTCTTTCGTGAATATTGCAGCTGGTGAGACTAAAACAGCTACACATACCTATGCAGCTGGTTTGAGCGGTGTTAAAACTGTCACATTCCAAGCAAAAGATGGTAATACTGTAGTTGGTTCTTCTCAAGCTTCAACTGTGTCACTGTCCCTACCGGTAACAGCGAGTTTTACATTCACTGTTCTTCCGACTAGTGGTACACTACCTCTGCCTGTTCAAGTAACATTGAACACTGGTGCTGATAACACAGTACCTAAGATCAGAGTTGATTGGGGTGATGGTACGGCGGTAACTGATGTTGTTGTCGGTGTATCGGATACAAAAACTGCTAACCACACTTATGCGGTTGGTACTAACCCAAGCAAAACTATTACCATGACCGGGTTGAATTCTTCGAATACACCTGTCGGTACTGCCAAAACTCAAGTGGTAACACTTAATGAGCCACCGGTAATACCTTCGAATGGTCCGGGTCCAGGTGAACTGATTGCTGGTGATGCTAACGCTGGTTTGTTTGGTGATTTGTCTGTCAGCGAACTTGTGACAATTGAACAAATTGAAGCTCTTGCTACAGTCGCCCTACCGGGTACTGCGACAAACAGATCGGTTACTAATCTATGGGTTAAATACTCGTTCAATAACAAGATCCTGTATATCCCTAAAAGACCTGTTCGTGGTGGTCTGAACTGGAACGACATTTATAAAGCTGGTTTCGTGTATGGTACAGATAATAATGGACTATACCCAGGCGCTAACACGCCGACGAATCAGTTGAAGATTGTTGAGAAGCTTGATTCGTCTGGTAAAACATGGAGATTTAAAGTTAGACTAATCTCTGTAGTTGCCGCTGACCCAACATCTGCTTGGGCTGCAACTGATGCGGTAACCCGAAATTCGGAATTTGCCAAACTGGTTGAGCGTACAGTACCATCTGTTAATGTTGATATTGTGTGGGCATCTTACGGTAATATGGGTACTGTTGTTGGTCAATCAACTTGGTCGGCTGCAACAGAATATTCGATCATGGCCGGTATTAACACAAATGCCTATTCCAGACAACAGGTCCAGAAGATTTCTAACACGGCGTGGTTGCCAGTATTGGAACTCATCCCGGACTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)