Phage RBP Database

Genbank accession

WEM32681.1 [GenBank]

Protein name

tail fiber protein

RBP type

TF

Evidence Phold

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,86

TSP

Evidence RBPdetect2

Probability 0,53

Seq2Symm

C3 confidence 0,996 truncated

C3	0,996
C1	0,003
C2	0,002

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MADIKVVRIESLPATTAVTEDDYLVVQQPDLTRRVKIGDVVHVDGTVSHVISFKEGGKLNGPMDFAYFEEEDLYLRWKGEFPHTVPALSSPYSDGGITDAAWMVYTDPSLREELESTIGASMIMTAEGQSVQDVMDVTVQTANDAKALAQRVDFGTVHTVGDVVHLVNFVGPAVIEEGRTTNYPSVAAGEKFLNGVVSRRDTTTVDGIFRGATSGAMYTIAVTNGVVTTKRIALRDEFKRLEANNPTRTVIRAGDDVNTAGYLQLDATGRWGMWNQQTASWQPLAIEQGGTGARDAAGARINLGAFYKQRAALEANFNINNLTGNQDGVYYQPMTANATEANGYPAGSGAGHLIVWQNNANGGTGCRQEYYPFSNVDVWYLRTYQANTNQWTAWQPMVRPRNDETFRSHIGLGSRNSPTFGHLYLSQSSADVKSASGIVNGDKYSADGVLEHGYRIYSEVRNDNKAWLTIHLHKGAKGSETHRYLGFREDGVLDCPKYMQVGDLTGQLTNWGLGEWIRSSGAERGFWGSKKAAKMVIWDGGMDESGNGTLEWGVYNNRKAKWEPLPQAAGGTGATTLADAQNLFKVPIAAGVKDFLTLPRTAGMEDGKYYPIIVRTDPYYAPATGTDITIVTRSSSGNDPMNCATLQCHYRTGGWTDRGGSFYGVVNFYQNEKAILGMVAPTRGKQEYVAFYVEARAFPVSIYASRNVVEVFTREQDYQVGSVTNNQDGVKFVSPLQSADLNLAILGDNNTNTRPIVDFKGTSGFYTGGGTQWHYIGTAERYAVMSKMNMPKVELWADGLDYLCYGSPRKALFSNAGFQCASDGTEDLTNGTFTSKCGNGAGLKGQAEFRSTPEAGQVIVRDVVGSAHRFYNFNKDGTFSAPGGFVCHTGADWNNQFGNNNPSKILAGNVNGPEGSMVVGGLSVAFSGNYAFQMAGRLDQLYTRSIEQGNHRAWNKVIQHRGQGLGTSDLNDYKADREGIYHQEANANATAERHYPPGQQMAGTLIVLRNSANEGTGCVQIYKMYLGGTWERYYNNTGSGMNWSPWKRTSFPESTTAPVMPDLWLPLTSNLKPVLGEGEMIFSRPSTATYFTKRGVMAVAQANQPRFERDGLLIEGQRTNLMLNSEDPSKWGASQQITVGSTVTNTNGTKGARFTVNTISGVETTALNLATVPATRGADVTGAEKFCTGSIIARGGKAHQRLRVRFDMYDGSTTVFQGDAYVNLSTLEVKTTGVAAGRIKVKAERWQTAGPAWIRVVATFEAVDSDMNIGCQFQIAPPDGSQHAVGDWVDVAIPQFELGSCESSFIPTGSSPVTRAADLCKFPMTDNLAPRPFTIAATVDANWRGWGKAPNAAPRVIDTEGHQSGAAFIMGFGSAANIAEDGYPYCDIGGSNRRVYEMAKTRKLKIGFRIKDDGKTCSFANGLVSTETQSSWEFLAGGALIRLGGQTATGERHLFGHIKDVRVWNSALTDTQLMMESVE

Physico‐chemical properties

protein length:	1479 AA
molecular weight:	160853,79910 Da
isoelectric point:	6,14693
aromaticity:	0,09804
hydropathy:	-0,37329

Domain architecture

WEM32681.1

1 1479 aa

ATT 46–117 · STR 310–395 · STR 961–1048 · STR 1411–1473 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR040775
RBD

IPR040775 cd19958 cd19958 IPR013320

G3DSA:2.10.10.80
ATT

G3DSA:2.10.10.80

WEM32681.1

11479 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1918
ATT

DC_1918 DC_1209

DC_1416
STR

DC_1416

WEM32681.1

11479 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR040775	RBD	DC_0821	46	103	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	47	117	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
cd19958	STR	DC_0464	310	395	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
cd19958	STR	DC_0464	961	1048	InterPro cluster	cd19958	Central	Low	Positional only	1183 proteins / 1674 hits
IPR013320	STR	IPR013320	1411	1473	Merged direct domain	Concanavalin A-like lectin/glucanase domain superfamily	Central	Low	Positional only	237 proteins / 237 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

WEM32681.1

1 1479 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	575	575	0,4594
Central domain	576	774	200	0,2935
C-terminal	775	1479	704	0,8263

Note: Constraints were applied during segmentation.
Fixed 308 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage B9-1 [NCBI] · taxon 3029069

Uroviricota Caudoviricetes Vequintavirus Escherichia phage B9-1

Host

Escherichia coli [NCBI] · taxon 562

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli

Genbank protein accession

WEM32681.1 [NCBI]

Genbank nucleotide accession

OQ420740.1 [NCBI]

CDS location

range 50232 -> 54671
strand +

CDS

ATGGCTGATATTAAAGTTGTCAGAATTGAATCTCTTCCTGCCACTACCGCAGTGACAGAGGATGATTACCTGGTTGTTCAACAACCAGACCTGACCCGTCGTGTGAAAATTGGCGATGTTGTCCATGTGGATGGGACTGTTTCTCATGTAATCTCCTTTAAGGAAGGTGGTAAGTTAAACGGCCCAATGGATTTTGCCTACTTCGAAGAGGAAGATCTATACCTGCGTTGGAAAGGCGAATTTCCACACACTGTTCCTGCACTGTCTTCACCATATTCTGATGGTGGGATTACCGATGCTGCATGGATGGTATATACAGACCCGTCCTTAAGGGAGGAGCTGGAGTCTACCATTGGTGCGTCTATGATTATGACAGCCGAAGGGCAGTCTGTCCAGGATGTAATGGATGTTACTGTTCAGACAGCCAACGATGCTAAAGCACTTGCACAGCGGGTAGATTTTGGTACAGTACATACTGTGGGCGATGTTGTTCACCTTGTCAACTTTGTTGGCCCTGCAGTTATTGAAGAGGGACGAACCACTAACTATCCTTCCGTAGCAGCTGGTGAAAAATTTCTGAATGGTGTGGTATCTCGTCGTGATACTACAACTGTTGATGGTATTTTCCGTGGCGCTACTTCCGGAGCCATGTATACCATTGCAGTAACAAACGGTGTGGTAACAACAAAAAGAATAGCCCTTCGTGATGAATTTAAACGCCTGGAGGCAAATAATCCAACAAGAACAGTTATCCGTGCTGGGGATGATGTAAACACAGCAGGGTACTTGCAGCTTGATGCAACAGGCCGTTGGGGTATGTGGAACCAACAGACAGCTTCGTGGCAACCTCTTGCTATAGAGCAGGGCGGCACAGGAGCTAGAGATGCCGCAGGTGCACGCATTAACCTAGGTGCTTTCTATAAGCAACGTGCAGCCCTTGAGGCAAATTTCAATATCAATAACCTGACTGGTAATCAGGATGGTGTATACTACCAGCCTATGACTGCTAATGCAACTGAGGCAAATGGTTACCCTGCGGGTTCTGGTGCGGGTCACCTAATTGTTTGGCAGAACAATGCTAACGGCGGCACAGGCTGTCGTCAGGAATACTACCCATTCTCTAACGTAGATGTTTGGTATTTGAGAACCTATCAGGCCAACACAAACCAGTGGACTGCATGGCAGCCGATGGTCAGACCTCGTAACGATGAGACCTTTAGATCGCACATCGGTCTTGGGTCTAGGAATTCTCCTACCTTCGGGCACCTTTACTTATCTCAAAGTTCTGCTGATGTCAAGTCGGCATCTGGCATTGTTAACGGGGACAAGTACAGTGCTGACGGTGTCCTTGAGCATGGGTATAGGATCTATTCCGAGGTAAGAAACGACAATAAGGCGTGGTTAACAATCCACCTGCACAAAGGTGCAAAAGGATCTGAAACTCATAGATATTTAGGTTTCCGCGAAGACGGCGTATTAGACTGCCCTAAATACATGCAGGTTGGGGATCTTACTGGTCAGCTGACAAACTGGGGACTCGGAGAATGGATCCGTAGTTCAGGAGCAGAAAGAGGGTTCTGGGGATCCAAGAAAGCCGCCAAGATGGTCATCTGGGATGGCGGGATGGATGAATCCGGTAATGGTACTCTAGAATGGGGTGTTTATAACAACCGGAAGGCCAAGTGGGAACCTTTACCTCAAGCCGCAGGTGGTACTGGGGCTACAACTCTAGCAGATGCTCAGAATCTGTTCAAAGTTCCTATAGCAGCAGGTGTAAAAGACTTCTTAACACTGCCAAGAACCGCAGGAATGGAAGATGGGAAATACTACCCGATCATCGTCAGAACAGATCCGTACTATGCTCCAGCAACTGGCACTGATATTACCATAGTTACCAGATCGTCATCTGGAAATGACCCTATGAACTGTGCTACCTTACAGTGTCACTATAGAACTGGAGGATGGACAGACAGAGGAGGCTCTTTCTACGGGGTAGTAAATTTCTACCAGAATGAAAAAGCAATTCTTGGGATGGTTGCTCCAACAAGGGGTAAACAAGAGTATGTTGCTTTCTATGTGGAGGCTCGTGCTTTCCCTGTCAGCATATACGCAAGTAGAAATGTTGTCGAAGTGTTTACCAGAGAGCAAGATTATCAGGTCGGCTCTGTAACAAACAATCAGGACGGTGTTAAGTTCGTTTCACCTCTCCAGTCGGCAGACTTGAATCTTGCTATTCTTGGAGATAACAATACAAACACCAGACCTATTGTTGACTTCAAAGGCACCTCTGGGTTCTACACTGGCGGCGGCACACAGTGGCACTATATAGGCACTGCTGAGCGCTATGCAGTGATGAGCAAAATGAACATGCCAAAAGTCGAGCTATGGGCAGACGGTCTTGACTATTTGTGCTACGGCAGTCCTAGAAAGGCGTTATTCTCTAATGCAGGATTCCAGTGTGCATCAGACGGGACAGAAGACCTGACTAACGGTACGTTTACCTCTAAATGCGGTAATGGTGCTGGCCTCAAAGGACAGGCAGAGTTCAGATCTACTCCAGAAGCTGGTCAAGTTATTGTTCGTGATGTTGTAGGTTCTGCTCACAGATTCTACAATTTCAACAAAGATGGTACTTTCTCAGCACCGGGTGGTTTTGTATGTCATACTGGTGCAGATTGGAACAATCAGTTCGGGAATAATAATCCGTCCAAAATACTGGCTGGCAATGTCAACGGACCTGAAGGTTCAATGGTTGTTGGCGGGTTGTCTGTGGCATTTTCTGGAAACTATGCTTTCCAGATGGCAGGCCGTTTAGATCAGCTGTACACCCGTTCCATAGAGCAGGGTAACCACAGAGCGTGGAACAAAGTTATTCAGCACCGTGGTCAAGGGTTGGGTACTAGTGACCTTAACGATTACAAAGCGGATCGCGAAGGTATTTACCATCAAGAGGCAAATGCCAACGCCACAGCGGAAAGACACTATCCACCAGGGCAGCAGATGGCTGGTACGCTGATCGTGCTTAGAAACTCTGCCAACGAGGGTACTGGGTGTGTCCAGATATATAAAATGTATCTTGGTGGGACGTGGGAAAGGTATTATAATAACACTGGCAGTGGGATGAACTGGAGCCCTTGGAAGAGAACTAGCTTCCCAGAAAGTACAACTGCCCCAGTTATGCCAGATCTGTGGCTACCTTTAACCTCTAACCTGAAACCTGTGTTAGGTGAGGGGGAGATGATCTTCTCCAGACCTTCTACCGCAACCTATTTCACTAAGCGTGGTGTTATGGCTGTTGCACAAGCAAACCAACCACGTTTCGAAAGAGATGGGCTGCTTATTGAAGGGCAAAGGACAAACCTAATGCTTAATAGTGAGGACCCAAGTAAGTGGGGGGCAAGTCAACAGATCACTGTTGGTAGCACTGTAACAAACACTAATGGAACAAAAGGTGCAAGATTTACAGTAAACACCATATCCGGTGTAGAAACAACAGCGTTAAACCTAGCTACGGTTCCAGCCACCAGGGGTGCCGATGTAACAGGTGCTGAGAAATTCTGTACTGGGTCTATTATTGCAAGGGGCGGTAAAGCTCACCAAAGACTGCGTGTAAGATTCGACATGTACGACGGGTCCACCACAGTATTTCAAGGTGATGCTTATGTCAACCTGTCAACACTTGAAGTTAAAACAACAGGTGTCGCAGCTGGGAGAATTAAAGTAAAAGCTGAGAGATGGCAAACAGCCGGACCTGCTTGGATAAGAGTTGTTGCTACGTTTGAGGCAGTGGACTCTGACATGAATATTGGGTGCCAGTTCCAGATTGCCCCACCGGATGGTTCTCAACATGCCGTAGGGGATTGGGTTGACGTCGCAATACCTCAGTTTGAGTTAGGATCTTGTGAGTCCTCGTTTATCCCTACAGGGTCTTCACCAGTGACTAGGGCAGCAGACCTTTGTAAATTCCCAATGACTGATAATTTAGCACCTAGACCGTTCACCATCGCCGCTACGGTGGATGCCAACTGGAGAGGTTGGGGAAAAGCTCCTAACGCAGCTCCTAGAGTTATTGATACAGAGGGCCACCAATCAGGTGCTGCATTTATCATGGGATTTGGCTCTGCAGCAAATATTGCAGAAGATGGTTATCCATATTGTGATATTGGCGGTTCAAACAGACGTGTCTATGAGATGGCTAAAACACGTAAATTGAAAATTGGGTTCAGGATAAAAGATGACGGTAAAACCTGCTCTTTTGCTAACGGATTGGTGAGTACGGAAACGCAATCTTCTTGGGAATTCCTGGCAGGAGGCGCTCTCATCCGTCTCGGAGGTCAAACGGCGACAGGTGAAAGACATTTGTTTGGTCATATTAAAGATGTAAGAGTTTGGAACTCTGCATTGACCGACACCCAGCTTATGATGGAGAGTGTTGAATAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)