Protein

View in Explore
Genbank accession
NP_116508.1 [GenBank]
Protein name
distal tail protein Dit
RBP type
TSP
Evidence RBPdetect
Probability 0,88
Protein sequence
MTFTISFNGQNISDLVDGFTSIERNFGSTWTNNLGPAGTTRYGQEFVNNHINAKTITISFIKDGIPKDWVNIRQQFASVLDVSTPSPLIFSDEPNKVWYALPDQLPTFSEDISSLRATGTLTFIVPSGVAISSYTQKLNSNNSGGINGFITVNSDNSVDVLINNQGTIPAYPTFKFTHKSDNAFIGIAGQNGVVGLGSQDQTLIDSKTTETTRVESQWLLNPSGISQNSNFSGHFNVANDVGNPQNSQLLTAGNLVFKKDGLRLQDGGPAPSGRTWSMQGAMQVYDVPADKTGNVGTANFTSTFNIWAQATKMGQTGLMQVLFCDSNNKLMAGLGIYKDDTRGNSFRTQLYIGGNHPRTWKTFGPGGQELNNGGHGDGKVPNPNLYFNSKTGYFTIQKKDRVFNFTFGNRGGNYPITIPELGSTKCTKVFVYMGQLKGRDVNTQYITNLSLRMFKFQKNDVTKTIDRNTDVTTFIPADNHHYGNGEVVVINMSSSKIYRREGLTIANDEMITGSEPFSVPPGQSIVNCSFGDNTVPPDIDVTWKERYL
Physico‐chemical
properties
protein length:548 AA
molecular weight: 60039,26500 Da
isoelectric point:7,05221
aromaticity:0,10219
hydropathy:-0,40967

Domains

Domains [InterPro]
G3DSA:2.40.30.200
ATT
1–131
G3DSA:2.40.30.200
DC_0420
STR
1–548
DC_0420
IPR006520
Unmapped
6–130
IPR006520
IPR008841
STR
41–125
IPR008841
NP_116508.1
1 548
Architecture
ATT
STR
ATT 1-131 | STR 132-548
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
NP_116508.1
1 548
Domain Start End Length (AA) Confidence
N-terminal 1 225 225 0,9825
Central domain 226 424 200 0,1069
C-terminal 425 548 123 0,3955
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-225
Central
226-424
C-terminal
425-548

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactococcus phage BK5-T
[NCBI] 		31754 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactococcus lactis
[NCBI] 		1358 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
NP_116508.1 [NCBI]
Genbank nucleotide accession
NC_002796 [NCBI]
CDS location
range 14532 -> 16178
strand +
CDS
TTGACATTTACGATAAGTTTTAATGGTCAAAATATTTCAGACTTGGTAGATGGATTTACTTCAATTGAACGAAATTTTGGCTCAACATGGACAAATAATCTTGGACCAGCAGGAACTACAAGATATGGTCAAGAATTTGTTAATAATCATATTAATGCGAAAACAATTACAATTTCTTTCATTAAAGATGGTATTCCGAAAGATTGGGTTAATATTCGCCAACAATTTGCTAGTGTTTTAGATGTTTCAACTCCTTCACCATTAATTTTTAGTGATGAGCCAAATAAAGTTTGGTATGCATTGCCTGATCAGTTACCTACTTTTTCTGAAGATATATCTTCTTTAAGGGCAACAGGAACTTTAACATTTATTGTACCATCAGGTGTTGCTATCTCAAGCTATACACAAAAATTGAATTCAAATAATTCAGGAGGAATAAATGGTTTCATTACAGTTAATTCAGATAACTCAGTTGATGTCTTGATTAATAACCAAGGGACTATTCCTGCATATCCTACGTTTAAATTTACTCATAAATCTGATAATGCATTTATAGGTATTGCAGGTCAAAATGGAGTTGTTGGATTGGGAAGTCAGGATCAAACTTTGATTGACTCAAAAACAACTGAAACAACAAGAGTAGAATCTCAATGGCTTTTAAACCCATCCGGTATAAGCCAAAATAGTAATTTTAGTGGACATTTTAATGTGGCTAATGATGTTGGCAACCCTCAAAATAGTCAATTATTAACTGCAGGAAATCTTGTTTTTAAAAAAGATGGATTAAGATTACAAGATGGTGGACCAGCTCCGTCTGGCAGAACATGGTCAATGCAAGGGGCTATGCAAGTCTATGATGTTCCAGCTGATAAAACAGGAAATGTTGGAACAGCTAATTTTACTTCAACATTTAATATTTGGGCGCAAGCAACAAAAATGGGGCAAACTGGGCTGATGCAAGTTTTATTTTGTGATTCTAACAATAAACTTATGGCTGGATTAGGAATATATAAAGATGATACAAGAGGAAATAGCTTTAGAACTCAACTTTATATTGGTGGTAATCATCCCAGAACATGGAAAACATTTGGACCAGGAGGACAAGAATTAAATAATGGTGGTCATGGAGATGGGAAAGTTCCTAATCCAAACTTATATTTTAATTCTAAAACTGGATATTTTACTATTCAAAAGAAAGATAGAGTTTTCAATTTTACATTTGGCAATAGAGGAGGAAATTACCCTATTACTATTCCAGAGCTTGGAAGTACTAAATGTACAAAAGTATTTGTATATATGGGGCAATTAAAAGGAAGAGATGTCAACACACAATATATAACAAATCTATCACTTAGAATGTTTAAATTTCAAAAGAATGATGTTACCAAAACAATTGATAGAAATACAGATGTTACAACATTTATTCCAGCAGATAATCATCATTATGGTAATGGTGAAGTTGTTGTGATAAATATGAGCAGTTCAAAAATATATAGAAGAGAAGGACTTACAATTGCTAATGATGAGATGATTACTGGTTCAGAACCATTTTCAGTTCCTCCAGGTCAATCAATTGTTAATTGCTCATTTGGAGATAATACAGTGCCTCCTGATATTGATGTAACTTGGAAAGAAAGGTATCTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c55a2a7e605512f9c92657a86433debdbdbe381ff13437d76ed05934b521f9fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7659
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50