Phage RBP Database

Genbank accession

ARB13625.1 [GenBank]

Protein name

hypothetical protein

RBP type

TSP

Evidence DepoScope

Probability 1,00

Seq2Symm

C1 confidence 0,394 truncated

C1	0,394
C3	0,244
C6	0,049

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MAAAIALPIVSAIVSTAISYAFPSDGPRLRDTKVSASTYGNVIPEIYGTARVGGNMIWSKPFTEKKKKKRAGKGGSYYNEYTYYCDFAMAFCRGPVKEVRRIWADGKVIYDTTGGSEVIDNNKYRFRFYPGDETQLPDSLIVEDKGADYAPAYRGLCYVVFDDFALADFGNRIPQIMAEVYAGDEGGAAITDIVPLPSSPVTGGSYQLGQMMIDADRGYFYLVDSVSNPAGTVLRRFLLANGKEDRREIVSIPQTQFPPSVYDSPDLTSVRAVTSKGELLCVFGGINNYMRIEKLDPYSWQSLGTIGRSYPFAGTPENSLQHSNTNFEISRDDKGNYLCLTLGVFGEYNIFDPSDMSFKAKGEMAGWGGAGTPMYICARQGGSAASRRFYHVTYTGGASLQVCSLGEVLYNHPLDYPGNSQTASSWAFWDEGDPGVVFFYSDGPNRYIAKWSESTGVLAWKTQLRNSDPFCGYGVYGLRARIKDNEFHWVYNKHLFSINTATGQWIDRTFDQDFYKSDNDKTAEQVNDGDKGLLLPRDISEDYVIYDPRRNIVICVGQIQGQNGIVHVGGYTGGKTSVGAIVERLLVSTGQMTSNDYDLTPLYDIPVYGYGYASSTDIKSIIAELRNLFMFDLVESDGRLVARVRGDQDPDAEVPWKLLGSQSGPTPDKADYWKETRMSESDLPASIDLTYSNIDDDYNPSTAKSKRIASPVATMLSRQQVKAECNLVMDATEAKNRVNIMLYTQWEERTQHQTALPWLYANLDASDLISVTMEDGRNYFERIGSIEFGADFSSRLETYGTDSGAYLSDKTGDGGGAGRPTVVPAPKPVVGFILNTPLLRDTHDSGGNFSNWYSAIGAGAPGVFLGGTMFKSANSQDYVDLYQEPESAEWGTVMGAVPSPSHGWFALDWETRITITPAVDFFELESITDDELWEGLNLVMIGDEVLQFRDAVQNADGTWTIWNLLRGRRGTQYACDNHKAGERFLFLDERSIEFQAENLDTSGQNRWYKAVGSGMSLFETDPIQINYQPRDLMPYRPADIRRAVAGGDVTVTWKRRTRFTATLKDGTGEVSLNEGTEAYEAYVLATSYAGDLSRQDAPAVYRRKYTLTSPSFTYTAAEQAADGFDVNLDTLHVVIYQLSSVVGRGFPGARSIESWQDF

Physico‐chemical properties

protein length:	1158 AA
molecular weight:	128336,54020 Da
isoelectric point:	4,83071
aromaticity:	0,11917
hydropathy:	-0,37435

Domain architecture

ARB13625.1

1 1158 aa

STR 259–339 · ATT 615–787 · RBD 890–984 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR007110
STR

IPR007110 IPR032876 IPR056490

ARB13625.1

11158 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_1879
ATT

DC_1879 DC_1657

DC_1311
RBD

DC_1311

ARB13625.1

11158 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR007110	STR	DC_0008	259	339	InterPro cluster	Immunoglobulin-like domain	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR032876	ATT	DC_0307	615	787	InterPro cluster	Tip attachment protein J	Central	Medium	Text match	1111 proteins / 1112 hits
IPR056490	RBD	DC_0637	890	984	InterPro cluster	Rcc01698-like, C-terminal domain	C-terminal	Low	Positional only	42 proteins / 42 hits

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

ARB13625.1

1 1158 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	197	197	0,8495
Central domain	198	577	381	0,8143
C-terminal	578	1158	580	0,1090

Note: Constraints were applied during segmentation.
Fixed 4 C-terminal predictions appearing before Central domain

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Caulobacter phage Ccr10 [NCBI] · taxon 1959735

Uroviricota Caudoviricetes Jeanschmidtviridae Shapirovirus Caulobacter phage Ccr10

Host

Caulobacter crescentus NA1000 [NCBI] · taxon 565050

Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae Caulobacter Caulobacter vibrioides

Genbank protein accession

ARB13625.1 [NCBI]

Genbank nucleotide accession

KY555142 [NCBI]

CDS location

range 67824 -> 71300
strand +

CDS

ATGGCCGCCGCCATTGCCCTTCCGATCGTCTCCGCCATCGTCAGCACGGCGATCAGCTACGCCTTCCCGAGCGATGGCCCGCGCCTGCGCGACACCAAGGTCTCGGCCTCGACCTACGGCAACGTGATCCCGGAAATCTACGGGACCGCGCGCGTCGGCGGCAACATGATCTGGTCCAAGCCGTTCACCGAGAAGAAGAAGAAGAAGCGGGCCGGCAAGGGCGGCTCCTACTACAACGAATACACCTACTACTGCGACTTCGCCATGGCCTTCTGCCGGGGGCCGGTCAAGGAAGTGCGCCGCATCTGGGCCGACGGTAAGGTGATCTATGACACCACCGGCGGCTCGGAGGTGATCGACAACAACAAGTACCGCTTCCGCTTCTATCCCGGCGACGAGACGCAGCTTCCCGACAGCCTCATCGTCGAGGACAAGGGCGCCGATTACGCCCCCGCCTACCGGGGCCTCTGCTACGTCGTGTTCGACGACTTCGCCCTGGCCGATTTCGGCAACCGCATCCCGCAGATCATGGCCGAGGTCTATGCCGGAGACGAAGGCGGCGCGGCGATCACCGACATCGTCCCGCTGCCGAGTTCGCCGGTCACTGGCGGGTCCTATCAGCTTGGCCAGATGATGATCGACGCTGACCGGGGCTATTTCTACCTCGTCGATTCGGTGTCCAACCCGGCAGGCACCGTTCTGCGCCGCTTCCTGCTGGCGAACGGCAAGGAGGATCGGCGCGAAATCGTCTCGATCCCGCAGACTCAGTTCCCGCCCTCGGTCTATGACAGCCCTGACCTGACCTCGGTCCGGGCGGTCACCTCCAAGGGCGAGCTTCTCTGCGTCTTCGGCGGGATCAACAACTACATGCGGATCGAGAAGCTCGATCCCTATTCCTGGCAGTCGCTGGGGACGATCGGCCGCAGCTATCCTTTCGCGGGCACTCCCGAAAACAGCCTTCAGCACTCCAACACCAACTTCGAGATTTCGCGGGATGACAAGGGCAACTATCTCTGTCTGACGCTGGGGGTGTTTGGCGAATACAACATCTTCGATCCCTCCGACATGTCGTTCAAGGCCAAGGGGGAAATGGCCGGCTGGGGTGGTGCGGGTACGCCGATGTACATCTGCGCCCGCCAAGGCGGCTCGGCGGCTTCCCGGCGGTTCTACCACGTCACCTACACGGGTGGCGCGTCCTTGCAGGTGTGCAGCCTGGGCGAGGTGCTCTACAATCACCCGCTCGACTATCCGGGCAATTCCCAGACCGCGTCGTCCTGGGCCTTCTGGGACGAGGGCGATCCGGGGGTGGTCTTCTTCTATTCCGACGGCCCTAACCGCTACATCGCCAAGTGGTCCGAATCCACCGGCGTGCTGGCCTGGAAGACCCAGCTTCGCAACTCCGATCCGTTCTGCGGCTATGGGGTCTATGGTCTGCGCGCCCGGATCAAGGATAACGAGTTCCACTGGGTCTACAACAAGCACCTGTTCTCGATCAACACCGCCACGGGTCAGTGGATCGACCGGACGTTCGACCAGGACTTCTACAAGAGCGACAACGACAAGACCGCCGAACAGGTCAACGACGGTGACAAGGGCCTGCTGTTGCCTCGCGACATCTCCGAGGACTATGTCATCTACGATCCGCGCCGCAACATCGTGATTTGCGTCGGACAGATTCAGGGCCAAAACGGCATCGTCCACGTCGGAGGCTACACGGGGGGCAAGACCTCGGTGGGGGCCATTGTCGAGCGTCTTCTGGTCTCGACGGGGCAGATGACCTCGAACGACTACGACCTGACGCCGCTCTACGACATCCCGGTCTACGGGTACGGCTACGCCTCCTCGACCGACATCAAGTCGATCATCGCCGAACTGCGCAACCTCTTCATGTTCGACCTCGTCGAAAGCGACGGTCGACTGGTCGCGCGCGTGCGCGGCGATCAGGACCCTGACGCCGAGGTGCCCTGGAAGCTCCTGGGCTCCCAGAGCGGCCCGACCCCGGACAAGGCCGACTACTGGAAAGAGACCCGGATGTCGGAGTCCGACCTCCCGGCCTCGATCGACCTGACCTATTCGAACATCGATGACGACTACAATCCGTCAACGGCCAAGTCCAAGCGGATCGCCTCGCCGGTGGCGACCATGCTCTCGCGCCAGCAGGTCAAGGCCGAGTGCAACCTCGTCATGGACGCGACCGAGGCCAAGAATCGCGTCAACATCATGCTCTATACCCAGTGGGAGGAGCGCACCCAGCACCAGACGGCCCTTCCCTGGCTCTACGCCAATCTCGACGCTTCGGACCTGATCTCGGTGACCATGGAGGACGGCCGTAACTACTTCGAGCGGATCGGCTCGATCGAGTTCGGCGCCGACTTCTCCTCGCGCCTGGAAACCTATGGCACCGACAGCGGCGCCTATCTCTCCGACAAGACCGGCGACGGCGGCGGCGCCGGGCGGCCCACGGTCGTGCCGGCCCCCAAGCCGGTGGTGGGCTTCATCCTCAACACCCCGTTGCTGCGCGACACCCACGACAGCGGCGGCAACTTCTCCAACTGGTATAGCGCCATCGGCGCCGGCGCGCCGGGCGTGTTCCTCGGCGGCACGATGTTCAAGTCCGCCAATTCGCAGGACTACGTTGATCTCTACCAGGAGCCGGAGAGCGCCGAGTGGGGCACGGTGATGGGGGCCGTGCCCTCCCCCTCGCACGGCTGGTTCGCGCTCGACTGGGAAACGCGCATCACCATCACGCCGGCGGTCGACTTCTTCGAACTGGAGTCGATCACCGACGACGAGCTTTGGGAAGGGCTCAACCTCGTGATGATCGGCGACGAGGTCCTCCAGTTCCGCGACGCGGTGCAGAACGCCGACGGCACCTGGACGATCTGGAACCTGCTGCGCGGCCGGCGCGGGACGCAATATGCCTGCGACAATCACAAGGCCGGCGAGCGCTTCCTGTTCCTCGACGAGCGCTCGATCGAGTTCCAGGCCGAGAACCTCGACACCTCGGGCCAGAACCGCTGGTATAAGGCCGTCGGCTCGGGCATGTCGCTGTTCGAGACCGATCCGATCCAGATCAATTACCAGCCCCGCGACCTCATGCCCTACCGCCCGGCCGACATCCGTCGGGCGGTCGCGGGCGGCGATGTCACCGTGACCTGGAAGCGTCGCACGCGTTTCACGGCCACGCTCAAGGATGGCACCGGCGAAGTCAGCCTCAACGAGGGGACCGAAGCCTATGAGGCCTATGTCCTCGCCACGTCTTACGCGGGGGACCTGTCGCGTCAGGACGCGCCGGCCGTCTACCGCCGTAAATACACCCTGACGAGTCCGAGCTTCACCTACACGGCGGCCGAGCAGGCGGCCGACGGATTTGACGTGAATCTTGACACTCTGCACGTGGTGATCTATCAGTTGAGTTCGGTTGTTGGTCGGGGTTTCCCCGGCGCGCGCTCGATTGAGTCCTGGCAGGACTTCTAA

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)