Phage RBP Database

Genbank accession

AXY85422.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence UniProt/TrEMBL

Probability 1,00

TF

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 1,00

Seq2Symm

C3 confidence 0,994

C3	0,994
C1	0,067
D3	0,025

Predicted homo-oligomer symmetry (Seq2Symm, per-class probabilities; C1 = monomer, C2 = dimer, C3 = trimer).

Protein sequence

MLQRLSAYLVKYKSKLTGTIERLLSDKLSDTIDVADFGVNPSSNDNRRALQAAFNAVRLLGGGTVSVTKAGEYKLSGTVEIFANTHFKVAKGVTFVRDYETGDTLFRLSQGQASNVTVSGGVYEGNGHTKGDTPFVVFASTSNNDLKFEGITVNNVVDYHAIDLADWNNVVIRDCKFLGFKNTGSRNFSEAIQLDPGLITVGHYVQSSGMLVENCYAGPNPESGFGGYGALIGNHASAYGVQDNNIRILNCTTDGALFAGVRVFNWKNWTVRGCTFRNSNARGVHVTPVSSQTKPQGTRQGSVVDCTFDGVRTPVLIAAPSWPFTDISDIWHDHIEISNNTMILTEDVSYGVDARWCKNLIVKGNTGSGGLGLIGLRFGTKYHIEGNTWENGRGSGIWLGESDATTFIGTGLSGEGILSRNIFSKLGQYGIHVNCKASGLVVKANNMKEVSTAEAGRHFISIDTGANNILVEGNIGVDGESLNKPSLGIRVTSSCSNIKLIGNDCYGTQAPQNNQGVGSSTVIVYGLNGNPTTLGVGAPVGSLATDINGSGGSTLYIKESGTSAQGWVAK

Physico‐chemical properties

protein length:	570 AA
molecular weight:	60531,97960 Da
isoelectric point:	6,82991
aromaticity:	0,08246
hydropathy:	-0,15158

Domain architecture

AXY85422.1

1 570 aa

STR 20–564 ·

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

InterPro domains

IPR012334
STR

IPR012334 IPR012334

IPR011050
STR

IPR011050 IPR006626 IPR006626 IPR006626 IPR006626

IPR012334
STR

IPR012334 IPR006626 IPR011050

IPR006626
Unmapped

IPR006626 IPR006626 IPR006626 IPR006626

AXY85422.1

1570 aa

ATT Attachment Domain STR Structural Domain RBD Receptor-Binding Domain CBM Carbohydrate-Binding Module LEC Lectin-like Domain ENZ Enzymatic Domain CHP Intramolecular Chaperone LNK Linker/Spacer Domain TAS Tail-Associated Structural TTP Tail Tubular Protein UNK Uncharacterized Domain Unmapped

Novel HMM domains (de novo, PhaRBP-HMM)

Experimental de novo families on regions without InterPro annotation. Separate from the InterPro architecture above.

DC_2234
RBD

DC_2234

AXY85422.1

1570 aa

InterPro domain annotations

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
IPR012334	STR	IPR012334	20	297	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR011050	STR	IPR011050	29	366	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	31	297	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	113	155	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	167	196	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	243	265	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	266	288	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR012334	STR	IPR012334	298	564	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR006626	Unmapped	-	298	319	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR011050	STR	IPR011050	336	522	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR006626	Unmapped	-	379	401	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	413	435	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	466	493	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	495	521	InterPro	Parallel beta-helix repeat	-	-	-	-

Proteins with similar domain architecture

Segmented into three structural domains: N-terminal, central, and C-terminal.

Domain layout

AXY85422.1

1 570 aa

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	44	44	0,9407
Central domain	45	511	468	0,9935
C-terminal	512	570	58	0,9245

N-terminal Central domain C-terminal

View these domains on the 3D structure via the Color by → Tail spike option in the Tertiary structure section below.

Phage

Escherichia phage LL11 [NCBI] · taxon 2315628

Uroviricota Caudoviricetes Autographivirales Autosignataviridae Rodentiumvirus Rodentiumvirus LL11

Host

Escherichia coli [NCBI] · taxon 562

Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli

No CDS data available.

Protein

Domains

Tail Spike Domain Segmentation

Taxonomy

Coding sequence (CDS)

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)